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Chovatia RM, Acharya A, Rasal KD, Bedekar MK, Jeena K, Rathinam RB, Dinakaran C, Tripathi G. Ontogeny and tissue specific expression profiles of recombination activating genes (RAGs) during development in Nile tilapia, Oreochromisniloticus. Gene Expr Patterns 2024; 52:119358. [PMID: 38460579 DOI: 10.1016/j.gep.2024.119358] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Revised: 01/18/2024] [Accepted: 02/28/2024] [Indexed: 03/11/2024]
Abstract
Recombination activating genes (RAGs) mediates the process of rearrangement and somatic recombination (V(D)J) to generate different antibody repertoire. Studies on the expression pattern of adaptive immune genes during ontogenic development are crucial for the formulation of fish immunization strategy. In the present study, Nile tilapia was taken to explore the relative expression profile of RAG genes during their developmental stages. The developmental stages of Nile tilapia, i.e., unfertilized egg, 0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28 and 30 days post-hatch (dph) and kidney, blood, gill, liver and spleen tissues from adult fish were collected and the cDNA synthesis was carried out. Gene specific primers for RAG-1 and RAG-2 of Nile tilapia were designed and their annealing temperature (Tm) was optimized by gradient PCR. Consequently, PCR was performed to confirm the specific amplification of RAG-1 and RAG-2 genes. Quantitative real-time PCR (qRT-PCR) gene expression of RAG-1 and RAG-2 were noticed in all the developmental stages; however, a significant increase was observed after 12 dph and peaked at 24 dph, followed by a gradual decrease until 30 dph. Tissue-specific gene expression profiling revealed that the highest expression of RAG-1 and RAG-2 was observed in the kidney, followed by spleen, gill, liver and blood. The findings of the study explored the suitable timing of lymphoid maturation that could be technically used for the adoption of strategies to improve disease resistance of fish larvae for mitigating larval mortality.
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Affiliation(s)
| | - Arpit Acharya
- ICAR-Central Institute of Fisheries Education, Mumbai, 400061, India
| | - Kiran D Rasal
- ICAR-Central Institute of Fisheries Education, Mumbai, 400061, India
| | | | - Kezhedath Jeena
- ICAR-Central Institute of Fisheries Education, Mumbai, 400061, India
| | - R Bharathi Rathinam
- ICAR-Central Institute of Fisheries Education, Mumbai, 400061, India; ICAR-Indian Agricultural Research Institute, Jharkhand, India
| | | | - Gayatri Tripathi
- ICAR-Central Institute of Fisheries Education, Mumbai, 400061, India.
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Jantawongsri K, Nørregaard RD, Bach L, Dietz R, Sonne C, Jørgensen K, Lierhagen S, Ciesielski TM, Jenssen BM, Waugh CA, Eriksen R, Nowak B, Anderson K. Effects of exposure to environmentally relevant concentrations of lead (Pb) on expression of stress and immune-related genes, and microRNAs in shorthorn sculpins (Myoxocephalus scorpius). ECOTOXICOLOGY (LONDON, ENGLAND) 2022; 31:1068-1077. [PMID: 36006498 PMCID: PMC9458575 DOI: 10.1007/s10646-022-02575-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Accepted: 08/09/2022] [Indexed: 06/15/2023]
Abstract
Old lead-zinc (Pb-Zn) mining sites in Greenland have increased the environmental concentration of Pb in local marine organisms, including the shorthorn sculpin. Organ metal concentrations and histopathology have been used in environmental monitoring programs to evaluate metal exposure and subsequent effects in shorthorn sculpins. So far, no study has reported the impact of heavy metals on gene expression involved in metal-related stress and immune responses in sculpins. The aim of this study was to investigate the effect of exposure to environmentally relevant waterborne Pb (0.73 ± 0.35 μg/L) on hepatic gene expression of metallothionein (mt), immunoglobulin M (igm), and microRNAs (miRNAs; mir132 and mir155) associated with immune responses in the shorthorn sculpin compared to a control group. The mt and igm expression were upregulated in the Pb-exposed group compared to the control group. The transcripts of mir132 and mir155 were not different in sculpins between the Pb-exposed and control group; however, miRNA levels were significantly correlated with Pb liver concentrations. Furthermore, there was a positive correlation between liver Pb concentrations and igm, and a positive relationship between igm and mir155. The results indicate that exposure to Pb similar to those concentrations reported in in marine waters around Greenland Pb-Zn mine sites influences the mt and immune responses in shorthorn sculpins. This is the first study to identify candidate molecular markers in the shorthorn sculpins exposed to waterborne environmentally relevant Pb suggesting mt and igm as potential molecular markers of exposure to be applied in future assessments of the marine environment near Arctic mining sites.
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Affiliation(s)
- Khattapan Jantawongsri
- Institute for Marine and Antarctic Studies (IMAS), University of Tasmania, Launceston, TAS, 7250, Australia.
| | - Rasmus Dyrmose Nørregaard
- Department of Ecoscience and Arctic Research Centre (ARC), Faculty of Technical Sciences, Aarhus University, Frederiksborgvej 399, P.O. Box 358, DK-4000, Roskilde, Denmark
| | - Lis Bach
- Department of Ecoscience and Arctic Research Centre (ARC), Faculty of Technical Sciences, Aarhus University, Frederiksborgvej 399, P.O. Box 358, DK-4000, Roskilde, Denmark
| | - Rune Dietz
- Department of Ecoscience and Arctic Research Centre (ARC), Faculty of Technical Sciences, Aarhus University, Frederiksborgvej 399, P.O. Box 358, DK-4000, Roskilde, Denmark
| | - Christian Sonne
- Department of Ecoscience and Arctic Research Centre (ARC), Faculty of Technical Sciences, Aarhus University, Frederiksborgvej 399, P.O. Box 358, DK-4000, Roskilde, Denmark
| | - Kasper Jørgensen
- Den Blå Planet, National Aquarium Denmark, Jacob Fortlingsvej 1, DK-2770, Kastrup, Copenhagen, Denmark
| | - Syverin Lierhagen
- Department of Chemistry, Norwegian University of Science and Technology, NO-7491, Trondheim, Norway
| | - Tomasz Maciej Ciesielski
- Department of Biology, Norwegian University of Science and Technology, Høgskoleringen 5, NO-7491, Trondheim, Norway
| | - Bjørn Munro Jenssen
- Department of Ecoscience and Arctic Research Centre (ARC), Faculty of Technical Sciences, Aarhus University, Frederiksborgvej 399, P.O. Box 358, DK-4000, Roskilde, Denmark
- Department of Biology, Norwegian University of Science and Technology, Høgskoleringen 5, NO-7491, Trondheim, Norway
- Department of Arctic Technology, The University Centre in Svalbard, P.O. Box 156, NO-9171, Longyearbyen, Svalbard, Norway
| | - Courtney Alice Waugh
- Department of Biology, Norwegian University of Science and Technology, Høgskoleringen 5, NO-7491, Trondheim, Norway
- Faculty of Biosciences and Aquaculture, Nord University, NO-7729, Steinkjer, Norway
| | - Ruth Eriksen
- Institute for Marine and Antarctic Studies (IMAS), University of Tasmania, Launceston, TAS, 7250, Australia
- CSIRO Oceans and Atmosphere, Castray Esplanade, Battery Point, Hobart, TAS, 7004, Australia
| | - Barbara Nowak
- Institute for Marine and Antarctic Studies (IMAS), University of Tasmania, Launceston, TAS, 7250, Australia
- Department of Ecoscience and Arctic Research Centre (ARC), Faculty of Technical Sciences, Aarhus University, Frederiksborgvej 399, P.O. Box 358, DK-4000, Roskilde, Denmark
| | - Kelli Anderson
- Institute for Marine and Antarctic Studies (IMAS), University of Tasmania, Launceston, TAS, 7250, Australia
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Investigating Both Mucosal Immunity and Microbiota in Response to Gut Enteritis in Yellowtail Kingfish. Microorganisms 2020; 8:microorganisms8091267. [PMID: 32825417 PMCID: PMC7565911 DOI: 10.3390/microorganisms8091267] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2020] [Revised: 08/03/2020] [Accepted: 08/19/2020] [Indexed: 12/24/2022] Open
Abstract
The mucosal surfaces of fish play numerous roles including, but not limited to, protection against pathogens, nutrient digestion and absorption, excretion of nitrogenous wastes and osmotic regulation. During infection or disease, these surfaces act as the first line of defense, where the mucosal immune system interacts closely with the associated microbiota to maintain homeostasis. This study evaluated microbial changes across the gut and skin mucosal surfaces in yellowtail kingfish displaying signs of gut inflammation, as well as explored the host gene expression in these tissues in order to improve our understanding of the underlying mechanisms that contribute to the emergence of these conditions. For this, we obtained and analyzed 16S rDNA and transcriptomic (RNA-Seq) sequence data from the gut and skin mucosa of fish exhibiting different health states (i.e., healthy fish and fish at the early and late stages of enteritis). Both the gut and skin microbiota were perturbed by the disease. More specifically, the gastrointestinal microbiota of diseased fish was dominated by an uncultured Mycoplasmataceae sp., and fish at the early stage of the disease showed a significant loss of diversity in the skin. Using transcriptomics, we found that only a few genes were significantly differentially expressed in the gut. In contrast, gene expression in the skin differed widely between health states, in particular in the fish at the late stage of the disease. These changes were associated with several metabolic pathways that were differentially expressed and reflected a weakened host. Altogether, this study highlights the sensitivity of the skin mucosal surface in response to gut inflammation.
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Sushila N, Das BK, Mir IN, Rout AK, Pani Prasad K, Tripathi G. Cloning, characterization and ontogenetic expression profile of RAG-2 and IgM in angelfish (Pterophyllum scalare). Gene 2020; 739:144496. [PMID: 32088242 DOI: 10.1016/j.gene.2020.144496] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2019] [Revised: 01/30/2020] [Accepted: 02/19/2020] [Indexed: 10/25/2022]
Abstract
Early larval developmental stages of fish are highly susceptible to opportunistic pathogens until the complete maturation of the lymphoid organs. Knowledge of the expression pattern of important markers of adaptive immune system during the ontogenetic development is essential before vaccinating the fish. In the present study, Pterophyllum scalare (angelfish) was taken to explore the relative expression profile of developmental markers of adaptive immunity, recombination activating gene-2 (RAG-2) and immunoglobulin M (IgM). The fishes were bred and early developmental stages (0-45 days post-hatched) were used to assess the expression profile. The genes, RAG-2 and IgM were cloned and sequenced with the base pair lengths of 1958 bp and 225 bp respectively. The mRNA expression of RAG-2 appeared at insignificant level at the first day of hatching, but the expression was significantly increased from 24 dph (days post-hatching) onwards and reached its peak at 27 dph. The results proved that the maturation of lymphoid organs was completed at 27 dph as the respective protein is involved in the V(D)J recombination, important for the maturation of lymphoid organs. A similar trend was also observed in the mRNA transcript levels of IgM gene and a significantly high expression was detected from 27 dph onwards. The present study suggested that the suitable time for vaccination in P. scalare could be taken at 27 dph, as the maturation and development of lymphoid organs is completed thus helps in stimulating the adaptive response of immunity against any pathogen.
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Affiliation(s)
- Ngairangbam Sushila
- Division of Aquatic Environment and Health Management, ICAR-Central Institute of Fisheries Education, Mumbai 400061, India
| | - Basanta Kumar Das
- ICAR-Central Inland Fisheries Research Institute, Barrackpore 700120, West Bengal, India
| | - Ishfaq Nazir Mir
- Directorate of Incubation and Vocational Training in Aquaculture (DIVA), Tamil Nadu Dr. J. Jayalalithaa Fisheries University, ECR Muttukadu, Chennai 603112, India
| | - Ajaya Kumar Rout
- ICAR-Central Inland Fisheries Research Institute, Barrackpore 700120, West Bengal, India
| | - K Pani Prasad
- Division of Aquatic Environment and Health Management, ICAR-Central Institute of Fisheries Education, Mumbai 400061, India
| | - Gayatri Tripathi
- Division of Aquatic Environment and Health Management, ICAR-Central Institute of Fisheries Education, Mumbai 400061, India.
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Velázquez J, Acosta J, Lugo JM, Reyes E, Herrera F, González O, Morales A, Carpio Y, Estrada MP. Discovery of immunoglobulin T in Nile tilapia (Oreochromis niloticus): A potential molecular marker to understand mucosal immunity in this species. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 2018; 88:124-136. [PMID: 30012536 DOI: 10.1016/j.dci.2018.07.013] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2018] [Revised: 07/12/2018] [Accepted: 07/12/2018] [Indexed: 05/08/2023]
Abstract
Immunoglobulin molecules play an important role in the immune defense system in all jawed vertebrates, by protecting the organism from a wide variety of pathogens. Nile tilapia (Oreochromis niloticus) is extensively cultivated worldwide, with a strong established market demand. It constitutes one of the model species for the study of fish immunology and its genome is currently fully sequenced. The presence of the immunoglobulin M gene in this species is well documented, as well as its major role in systemic immunity. To date, the IgT gene from O. niloticus has not been identified and, therefore, no information is available on the role of this immunoglobulin isotype in the immune response in tilapia. In the present work, novel secreted and membrane immunoglobulin T isotypes and a fragment of IgM were isolated from tilapia head kidney lymphocytes. Their transcriptional profiles were analyzed by quantitative PCR in larval development and in different tissues of healthy or lipopolysaccharide/Edwardsiella tarda-challenged tilapia adults. The presence of IgT and IgM were detected in early stages of larval development. Additionally, these genes exhibited differential expression profiles in basal conditions and after E. tarda infection in adult tilapia, in accord with the proposed effector functions of these immunoglobulins in the systemic and mucosal compartments. Our results suggest the potential involvement of this new Ig in mucosal immunity in tilapia.
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Affiliation(s)
- Janet Velázquez
- Veterinary Immunology Project, Animal Biotechnology Division, Center for Genetic Engineering and Biotechnology, P.O. Box 6162, Havana, 10600, Cuba
| | - Jannel Acosta
- Veterinary Immunology Project, Animal Biotechnology Division, Center for Genetic Engineering and Biotechnology, P.O. Box 6162, Havana, 10600, Cuba; University of Concepción, Interdisciplinary Center for Aquaculture Research of the UdeC (INCAR), O'higgins, 1695, Concepción, Chile
| | - Juana María Lugo
- Veterinary Immunology Project, Animal Biotechnology Division, Center for Genetic Engineering and Biotechnology, P.O. Box 6162, Havana, 10600, Cuba
| | - Eduardo Reyes
- Veterinary Immunology Project, Animal Biotechnology Division, Center for Genetic Engineering and Biotechnology, P.O. Box 6162, Havana, 10600, Cuba
| | - Fidel Herrera
- Veterinary Immunology Project, Animal Biotechnology Division, Center for Genetic Engineering and Biotechnology, P.O. Box 6162, Havana, 10600, Cuba
| | - Osmany González
- Veterinary Immunology Project, Animal Biotechnology Division, Center for Genetic Engineering and Biotechnology, P.O. Box 6162, Havana, 10600, Cuba
| | - Antonio Morales
- Veterinary Immunology Project, Animal Biotechnology Division, Center for Genetic Engineering and Biotechnology, P.O. Box 6162, Havana, 10600, Cuba
| | - Yamila Carpio
- Veterinary Immunology Project, Animal Biotechnology Division, Center for Genetic Engineering and Biotechnology, P.O. Box 6162, Havana, 10600, Cuba.
| | - Mario Pablo Estrada
- Veterinary Immunology Project, Animal Biotechnology Division, Center for Genetic Engineering and Biotechnology, P.O. Box 6162, Havana, 10600, Cuba.
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