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Navarrete-Meneses MP, Ochoa-Mellado I, Gutiérrez-Álvarez R, Martínez-Anaya D, Juárez-Figueroa U, Durán-McKinster C, Lieberman-Hernández E, Yokoyama-Rebollar E, Gómez-Carmona S, Del Castillo-Ruiz V, Pérez-Vera P, Salas-Labadía C. Cytogenomic characterization of small supernumerary marker chromosomes in patients with pigmentary mosaicism. Front Genet 2024; 15:1356786. [PMID: 38711916 PMCID: PMC11071077 DOI: 10.3389/fgene.2024.1356786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2023] [Accepted: 03/21/2024] [Indexed: 05/08/2024] Open
Abstract
Introduction The combination of gene content on the marker chromosome, chromosomal origin, level of mosaicism, origin mechanism (chromothripsis), and uniparental disomy can influence the final characterization of sSMCs. Several chromosomal aberrations, including sSMCs, have been observed in 30%-60% of patients with pigmentary mosaicism, and in more than 80%, chromosomal abnormalities are present in the mosaic state. In patients with pigmentary mosaicism the most representative chromosomes involved in sSMCs are 3, 5, 6, 9, 10, 13, 15, 18, 20, and X. In this study, we included the complete clinical, cytogenetic, and molecular characterization of seven patients with pigmentary mosaicism associated with the presence of SMCs of different chromosomal origins. Methods The patients were diagnosed by the Genetics and Dermatology Department of three different hospitals. Cytogenetic and FISH analyses were performed on peripheral blood, light skin, and dark skin. FISH analysis was performed using different probes, depending on the marker chromosome description. Different array analysis was performed. Results To date, of the seven cases studied, the chromosomal origins of six were successfully identified by FISH or array analysis. The chromosomes involved in SMCs were 6, 9, 15, and 18, X. The most frequently found was the centric minute structure. Discussion To date, this group of seven patients constitutes the largest clinical and cytogenetically finely described study of cases with pigmentary mosaicism associated with sSMCs. Undoubtedly, analysis of the two skin types is a fundamental part of our study, as numerical differences may occur in the cell lines found in each skin type. The knowledge generated in this study will help delineate a very heterogeneous entity more accurately, and in the future, analyzing more patients with PM will likely establish a more definite association with the presence of this genetic alteration.
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Affiliation(s)
- M. P. Navarrete-Meneses
- Genetic and cancer Laboratory, National Institute of Pediatrics (Mexico), Mexico City, Mexico
| | - I. Ochoa-Mellado
- Genética Humana, Instituto Nacional de Pediatría, Mexico City, Mexico
| | - R. Gutiérrez-Álvarez
- Genetic and cancer Laboratory, National Institute of Pediatrics (Mexico), Mexico City, Mexico
| | - D. Martínez-Anaya
- Genetic and cancer Laboratory, National Institute of Pediatrics (Mexico), Mexico City, Mexico
| | - U. Juárez-Figueroa
- Laboratorio de Citogenética, Instituto Nacional de Pediatría, Mexico City, Mexico
| | - C. Durán-McKinster
- Departamento de Dermatología, Instituto Nacional de Pediatría, Mexico City, Mexico
| | | | | | - S. Gómez-Carmona
- Departamento de Genética Médica, Centro de Rehabilitación e Inclusión Infantil Teletón, Cancún, México
| | | | - P. Pérez-Vera
- Genetic and cancer Laboratory, National Institute of Pediatrics (Mexico), Mexico City, Mexico
| | - C. Salas-Labadía
- Genetic and cancer Laboratory, National Institute of Pediatrics (Mexico), Mexico City, Mexico
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Haggerty A, Spaulding J, Fisher S, Byers B, Mahoney N, Nelson M, Althof P, Dave B. Patient with Mosaic Turner Syndrome and a Derivative X Chromosome with a Variant Triple X Diagnosis in Fetus: A Case Report. Cytogenet Genome Res 2023; 162:609-616. [PMID: 36787703 DOI: 10.1159/000529619] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2022] [Accepted: 02/07/2023] [Indexed: 02/16/2023] Open
Abstract
Although Turner syndrome is most often sporadic, multigenerational recurrence has been reported more often in the offspring of women with mosaic or variant forms of Turner syndrome. We present a case in which natural conception in a woman with identified 45,X/46,XX mosaicism resulted in a fetus with a gain of a derivative X chromosome. The unexpected fetal finding prompted further cytogenetic evaluation of the patient and subsequent identification of an additional cell line with the same derivative X chromosome, not observed in the initial study. To our knowledge, this is the first case in which further investigation of an abnormal noninvasive prenatal screen resulted in the identification of both maternal and fetal sex chromosome abnormality. We discuss the discordant finding, similar cases, and potential phenotype with respect to skewed X inactivation. We also highlight the use of multiple testing methodologies to characterize the serendipitous identification of a derivative X chromosome.
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Affiliation(s)
- Abigail Haggerty
- Warren G. Sanger Human Genetics Laboratory, University of Nebraska Medical Center/Nebraska Medicine, Omaha, Nebraska, USA,
| | - Joanna Spaulding
- Warren G. Sanger Human Genetics Laboratory, University of Nebraska Medical Center/Nebraska Medicine, Omaha, Nebraska, USA
- Department of Genetic Medicine, Munroe Meyer Institute for Genetics and Rehabilitation, University of Nebraska Medical Center, Omaha, Nebraska, USA
| | - Sara Fisher
- Department of Medical Sciences, College of Allied Health Professions, University of Nebraska Medical Center, Omaha, Nebraska, USA
| | - Benjamin Byers
- Department of Obstetrics and Gynecology, Bryan Health, Lincoln, Nebraska, USA
| | - Nicolle Mahoney
- Gynecology & Fertility, Gynecology & Fertility P.C., Lincoln, Nebraska, USA
| | - Marilu Nelson
- Warren G. Sanger Human Genetics Laboratory, University of Nebraska Medical Center/Nebraska Medicine, Omaha, Nebraska, USA
| | - Pamela Althof
- Warren G. Sanger Human Genetics Laboratory, University of Nebraska Medical Center/Nebraska Medicine, Omaha, Nebraska, USA
| | - Bhavana Dave
- Warren G. Sanger Human Genetics Laboratory, University of Nebraska Medical Center/Nebraska Medicine, Omaha, Nebraska, USA
- Department of Genetic Medicine, Munroe Meyer Institute for Genetics and Rehabilitation, University of Nebraska Medical Center, Omaha, Nebraska, USA
- Department of Pathology/Microbiology, University of Nebraska Medical Center, Omaha, Nebraska, USA
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Salas-Labadía C, Gómez-Carmona S, Cruz-Alcívar R, Martínez-Anaya D, Del Castillo-Ruiz V, Durán-McKinster C, Ulloa-Avilés V, Yokoyama-Rebollar E, Ruiz-Herrera A, Navarrete-Meneses P, Lieberman-Hernández E, González-Del Angel A, Cervantes-Barragán D, Villarroel-Cortés C, Reyes-León A, Suárez-Pérez D, Pedraza-Meléndez A, González-Orsuna A, Pérez-Vera P. Genetic and clinical characterization of 73 Pigmentary Mosaicism patients: revealing the genetic basis of clinical manifestations. Orphanet J Rare Dis 2019; 14:259. [PMID: 31730496 PMCID: PMC6858688 DOI: 10.1186/s13023-019-1208-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Accepted: 09/24/2019] [Indexed: 02/08/2023] Open
Abstract
BACKGROUND Pigmentary mosaicism constitutes a heterogeneous group of skin pigmentation alterations associated with multisystem involvement. The aim of this study was to establish a complete cytogenetic and molecular characterization of PM patients, emphasizing on searching for possible low chromosomal mosaicism and on establishing an accurate genotype-phenotype correlation. RESULTS A total of 73 patients were included (3 months to 18 years of age), 52% male and 48% female. Observed in 69 (95%) patients, the most frequent pattern of pigmentation was fine and whorled BL, which was associated with disseminated skin extent in 41 (59%) patients. Central nervous system (84%) alterations were the most frequent observed in the group of patients, followed by the musculoskeletal (53%) and ophthalmologic (27%) alterations. Considering the pattern of pigmentation, no significant differences in association with skin extent or extracutaneous manifestations were detected. Following a strict cytogenetic analysis strategy, screening metaphases from three different tissues (peripheral blood, hyperpigmented and hypopigmented skin) we found that 23/73 patients had chromosomal abnormalities classified as follows: 1) Mosaic with 2 or more different cell lines with structural alterations n = 19; 2) Polyploidy (mosaic) n = 1 and 3) Alterations in all cells in three different tissues n = 3. SNP array, array CGH and FISH were useful for the complete characterization of the chromosomal aberrations, for the detection of microdeletions in patients with normal karyotype but with strong clinical suspicious of chromosomal alteration, and for a better establishment of genotype-phenotype correlation. In 2 patients we found genes associated with some of the extracutaneous manifestations (SHH, MNX1, PPP2R2C). CONCLUSIONS This group of 73 patients finely described is the largest series of patients with pigmentary mosaicism reported worldwide. As we showed in this study, the followed analysis strategy allowed the detection of cytogenetic and molecular abnormalities, and made possible the establishment of genotype-phenotype associations in some patients. An important limitation of our study was the analysis of fibroblasts cultures instead of melanocytes and keratinocytes. In some cases the direct molecular DNA analysis of skin biopsy could be another choice.
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Affiliation(s)
- C Salas-Labadía
- Laboratorio de Genética y Cáncer, Departamento de Genética Humana, Instituto Nacional de Pediatría, 04530, Ciudad de México, Mexico.
| | - S Gómez-Carmona
- Departamento de Genética Médica, Centro de Rehabilitación e Inclusión Infantil Teletón, Tuxtla Gutiérrez, Chiapas, Mexico.,Departamento de Genética Humana, Instituto Nacional de Pediatría, Ciudad de México, Mexico
| | - R Cruz-Alcívar
- Laboratorio de Genética y Cáncer, Departamento de Genética Humana, Instituto Nacional de Pediatría, 04530, Ciudad de México, Mexico.,Laboratorio de Citogenética, Genos Médica, Centro Especializado en Genética, Ciudad de México, Mexico.,Facultad de Ciencias, Universidad Nacional Autónoma de México, Ciudad de México, Mexico
| | - D Martínez-Anaya
- Laboratorio de Genética y Cáncer, Departamento de Genética Humana, Instituto Nacional de Pediatría, 04530, Ciudad de México, Mexico
| | - V Del Castillo-Ruiz
- Departamento de Genética Humana, Instituto Nacional de Pediatría, Ciudad de México, Mexico
| | - C Durán-McKinster
- Departamento de Dermatología, Instituto Nacional de Pediatría, Ciudad de México, Mexico
| | - V Ulloa-Avilés
- Laboratorio de Genética y Cáncer, Departamento de Genética Humana, Instituto Nacional de Pediatría, 04530, Ciudad de México, Mexico
| | - E Yokoyama-Rebollar
- Departamento de Genética Humana, Instituto Nacional de Pediatría, Ciudad de México, Mexico
| | - A Ruiz-Herrera
- Hospital de Especialidades Pediátrico de León, León, Guanajuato, Mexico
| | - P Navarrete-Meneses
- Laboratorio de Genética y Cáncer, Departamento de Genética Humana, Instituto Nacional de Pediatría, 04530, Ciudad de México, Mexico
| | - E Lieberman-Hernández
- Departamento de Genética Humana, Instituto Nacional de Pediatría, Ciudad de México, Mexico
| | - A González-Del Angel
- Laboratorio de Biología Molecular, Departamento de Genética Humana, Instituto Nacional de Pediatría, Ciudad de México, Mexico
| | | | - C Villarroel-Cortés
- Departamento de Genética Humana, Instituto Nacional de Pediatría, Ciudad de México, Mexico
| | - A Reyes-León
- Laboratorio de Genética y Cáncer, Departamento de Genética Humana, Instituto Nacional de Pediatría, 04530, Ciudad de México, Mexico
| | - D Suárez-Pérez
- Departamento de Genética Humana, Instituto Nacional de Pediatría, Ciudad de México, Mexico
| | - A Pedraza-Meléndez
- Laboratorio de Genética y Cáncer, Departamento de Genética Humana, Instituto Nacional de Pediatría, 04530, Ciudad de México, Mexico.,Posgrado en Ciencias Biológicas, Universidad Nacional Autónoma de México, Ciudad de México, Mexico
| | - A González-Orsuna
- Laboratorio de Genética y Cáncer, Departamento de Genética Humana, Instituto Nacional de Pediatría, 04530, Ciudad de México, Mexico
| | - P Pérez-Vera
- Laboratorio de Genética y Cáncer, Departamento de Genética Humana, Instituto Nacional de Pediatría, 04530, Ciudad de México, Mexico.
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Pinto IP, Minasi LB, da Cruz AS, de Melo AV, da Cruz e Cunha DM, Pereira RR, Ribeiro CL, da Silva CC, de Melo e Silva D, da Cruz AD. A non-syndromic intellectual disability associated with a de novo microdeletion at 7q and 18p, microduplication at Xp, and 18q partial trisomy detected using chromosomal microarray analysis approach. Mol Cytogenet 2014; 7:44. [PMID: 25028595 PMCID: PMC4099144 DOI: 10.1186/1755-8166-7-44] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2014] [Accepted: 06/20/2014] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Chromosome abnormalities that segregate with a disease phenotype can facilitate the identification of disease loci and genes. The relationship between chromosome 18 anomalies with severe intellectual disability has attracted the attention of cytogeneticists worldwide. Duplications of the X chromosome can cause intellectual disability in females with variable phenotypic effects, due in part to variations in X-inactivation patterns. Additionally, deletions of the 7qter region are associated with a range of phenotypes. RESULTS We report the first case of de novo microdeletion at 7q and 18p, 18q partial trisomy, microduplication at Xp associated to intellectual disability in a Brazilian child, presenting a normal karyotype. Karyotyping showed any chromosome alteration. Chromosomal microarray analysis detected a de novo microdeletion at 18p11.32 and 18q partial trisomy, an inherited microdeletion at 7q31.1 and a de novo microduplication at Xp22.33p21.3. CONCLUSIONS Our report illustrates a case that presents complex genomic imbalances which may contribute to a severe clinical phenotypes. The rare and complex phenotypes have to be investigated to define the subsets and allow the phenotypes classification.
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Affiliation(s)
- Irene Plaza Pinto
- Departamento de Biologia, Pontifícia Universidade Católica de Goiás, Núcleo de Pesquisas Replicon, Rua 235, n. 40, Bloco L, Área IV Setor Universitário, Goiânia, GO, Brazil
- Departamento de Biologia, Pontifícia Universidade Católica de Goiás, Mestrado em Genética, Programa de Pós Graduação Mestrado em Genética, Rua 235, n. 40, Bloco L, Área IV Setor Universitário, Goiânia, GO, Brazil
| | - Lysa Bernardes Minasi
- Departamento de Biologia, Pontifícia Universidade Católica de Goiás, Núcleo de Pesquisas Replicon, Rua 235, n. 40, Bloco L, Área IV Setor Universitário, Goiânia, GO, Brazil
- Departamento de Biologia, Pontifícia Universidade Católica de Goiás, Mestrado em Genética, Programa de Pós Graduação Mestrado em Genética, Rua 235, n. 40, Bloco L, Área IV Setor Universitário, Goiânia, GO, Brazil
| | - Alex Silva da Cruz
- Departamento de Biologia, Pontifícia Universidade Católica de Goiás, Núcleo de Pesquisas Replicon, Rua 235, n. 40, Bloco L, Área IV Setor Universitário, Goiânia, GO, Brazil
- Universidade Federal de Goiás, Instituto de Ciências Biológicas, Programa de Pós Graduação em Biologia, Campus Samambaia, Goiânia, GO, Brazil
| | - Aldaires Vieira de Melo
- Universidade Federal de Goiás, Programa de Pós Graduação em Biotecnologia e Biodiversidade, Rede Centro Oeste de Pós Graduação, Pesquisa e Inovação, Campus Samambaia, Goiânia, GO, Brazil
| | - Damiana Míriam da Cruz e Cunha
- Departamento de Biologia, Pontifícia Universidade Católica de Goiás, Núcleo de Pesquisas Replicon, Rua 235, n. 40, Bloco L, Área IV Setor Universitário, Goiânia, GO, Brazil
- Departamento de Biologia, Pontifícia Universidade Católica de Goiás, Mestrado em Genética, Programa de Pós Graduação Mestrado em Genética, Rua 235, n. 40, Bloco L, Área IV Setor Universitário, Goiânia, GO, Brazil
| | - Rodrigo Roncato Pereira
- Universidade Federal de Goiás, Instituto de Ciências Biológicas, Programa de Pós Graduação em Biologia, Campus Samambaia, Goiânia, GO, Brazil
| | - Cristiano Luiz Ribeiro
- Departamento de Biologia, Pontifícia Universidade Católica de Goiás, Núcleo de Pesquisas Replicon, Rua 235, n. 40, Bloco L, Área IV Setor Universitário, Goiânia, GO, Brazil
| | - Claudio Carlos da Silva
- Departamento de Biologia, Pontifícia Universidade Católica de Goiás, Núcleo de Pesquisas Replicon, Rua 235, n. 40, Bloco L, Área IV Setor Universitário, Goiânia, GO, Brazil
- Departamento de Biologia, Pontifícia Universidade Católica de Goiás, Mestrado em Genética, Programa de Pós Graduação Mestrado em Genética, Rua 235, n. 40, Bloco L, Área IV Setor Universitário, Goiânia, GO, Brazil
- Laboratório de Citogenética Humana e Genética Molecular, Secretaria do Estado da Saúde de Goiás (LACEN/SESGO), Goiânia, GO, Brazil
| | - Daniela de Melo e Silva
- Departamento de Biologia, Pontifícia Universidade Católica de Goiás, Núcleo de Pesquisas Replicon, Rua 235, n. 40, Bloco L, Área IV Setor Universitário, Goiânia, GO, Brazil
- Programa de Pós-Graduação em Genética e Biologia Molecular, Laboratório de Genética e Biodiversidade, Universidade Federal de Goiás, Goiânia, GO, Brazil
| | - Aparecido Divino da Cruz
- Departamento de Biologia, Pontifícia Universidade Católica de Goiás, Núcleo de Pesquisas Replicon, Rua 235, n. 40, Bloco L, Área IV Setor Universitário, Goiânia, GO, Brazil
- Universidade Federal de Goiás, Instituto de Ciências Biológicas, Programa de Pós Graduação em Biologia, Campus Samambaia, Goiânia, GO, Brazil
- Departamento de Biologia, Pontifícia Universidade Católica de Goiás, Mestrado em Genética, Programa de Pós Graduação Mestrado em Genética, Rua 235, n. 40, Bloco L, Área IV Setor Universitário, Goiânia, GO, Brazil
- Universidade Federal de Goiás, Programa de Pós Graduação em Biotecnologia e Biodiversidade, Rede Centro Oeste de Pós Graduação, Pesquisa e Inovação, Campus Samambaia, Goiânia, GO, Brazil
- Laboratório de Citogenética Humana e Genética Molecular, Secretaria do Estado da Saúde de Goiás (LACEN/SESGO), Goiânia, GO, Brazil
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