Improving the sensitivity limit of surface plasmon resonance biosensors by detecting mixed interference signals

Comparative study between polarimetric and intensity-based surface plasmon resonance sensors in the spectral mode

There is a debate on whether phase measurement in surface plasmon resonance (SPR) sensors give better resolution than intensity measurement. In this work, we show that each one of the modes can give better resolution depending on the metal layer thickness chosen, as well as the available noise levels in the system. We propose a three point polarimetric approach to extract the ellipsometric parameters and phase information in the spectral mode. It is shown that the polarimetric measurement at its optimal thickness range gives up to seven-fold higher resolution than the intensity, especially at noise levels of off the shelf spectrometers. When noise levels are very low, the resolution in the two modes becomes nearly equal. The same is true when considering the whole SPR curve rather than single point detection. However, it is clearly shown both experimentally and theoretically that the polarimetric measurements at their optimal range give much better resolution than the intensity.

A non-PCR SPR platform using RNase H to detect MicroRNA 29a-3p from throat swabs of human subjects with influenza A virus H1N1 infection

As in all RNA viruses, influenza viruses change and mutate constantly because their RNA polymerase has no proofreading ability. This poses a serious threat to public health nowadays. In addition, traditional pathogen-based detection methods may not be able to report an infection from an unknown type or a subtype of virus if its nucleotide sequence is not known. Because of these factors, targeting host microRNA signatures may be an alternative to classify infections and distinguish types of pathogens as microRNAs are produced in humans shortly after infection. Although this approach is in its infant stage, there is an urgent need to develop a rapid reporter assay for microRNA for disease control and prevention. As a proof of concept, we report herein for the first time a non-PCR MARS (MicroRNA-RNase-SPR) assay to detect the microRNA miR-29a-3p from human subjects infected with influenza virus H1N1 by surface plasmon resonance (SPR). In our MARS assay, RNase H is employed to specifically hydrolyze the RNA probes immobilized on the gold surface where they hybridize with its cognate target cDNAs miR-29a-3p, where it was formed from reverse transcription with mature miR-29a-3p specific stem-looped primers. After the digestion of the RNA probe by RNase H, the intact cDNA was released from the RNA-DNA hybrid and bound to a new RNA probe for another enzymatic reaction cycle to amplify signals. With assay optimization, the detection limit of our MARS assay for miR-29a-3p was found to be 1 nM, and this new assay could be completed within 1 hour without thermal cycling. This non-PCR assay with high selectivity for mature microRNA provides a new platform for rapid disease diagnosis, quarantine and disease control.

Focused cylindrical vector beam assisted microscopic pSPR biosensor with an ultra wide dynamic range

A novel phase-sensitive surface plasmon resonance (pSPR) biosensor based on differential phase measurement between two cylindrical vector beams, namely radially polarized and azmuthally polarized beams, is proposed and studied in an inverted microscope. Different from a fixed angle or a relatively small angular range for SPR excitation in the attenuated total reflection (ATR) configuration, the signal beam focused by a total internal reflection fluorescence microscopic objective contains the entire angular range from 0 to the maximum angle given by the numerical aperture, leading to a dynamic range of 0.41 RIU which is over seven times wider than the best result of the ATR pSPR sensor. Moreover, with the technique of differential phase measurement between radial and azimuthal polarizations employed in our configuration, high sensitivity of ±9.05×10(-8) refractive index unit/1 deg can simultaneously be achieved in principle. The proposed technique maintains the unique advantages in terms of securing high imaging resolution and sensitivity with an ultra-wide dynamic range simultaneously.

Phase and amplitude sensitivities in surface plasmon resonance bio and chemical sensing

We consider amplitude and phase characteristics of light reflected under the Surface Plasmon Resonance (SPR) conditions and study their sensitivities to refractive index changes associated with biological and chemical sensing. Our analysis shows that phase can provide at least two orders of magnitude better detection limit due to the following reasons: (i) Maximal phase changes occur in the very dip of the SPR curve where the vector of probing electric field is maximal, whereas maximal amplitude changes are observed on the resonance slopes: this provides a one order of magnitude larger sensitivity of phase to refractive index variations; (ii) Under a proper design of a detection scheme, phase noises can be orders of magnitude lower compared to amplitude ones, which results in a much better signal-to-noise ratio; (iii) Phase offers much better possibilities for signal averaging and filtering, as well as for image treatment. Applying a phase-sensitive SPR polarimetry scheme and using gas calibration model, we experimentally demonstrate the detection limit of 10(-8) RIU, which is about two orders of magnitude better compared to amplitude-sensitive schemes. Finally, we show how phase can be employed for filtering and treatment of images in order to improve signal-to-noise ratio even in relatively noisy detection schemes. Combining a much better physical sensitivity and a possibility of imaging and sensing in micro-arrays, phase-sensitive methodologies promise a substantial upgrade of currently available SPR technology.