Surface-enhanced plasmon resonance detection of nanoparticle-conjugated DNA hybridization

Effectiveness of high curvature segmentation on the curved flexible surface plasmon resonance

In this report, we explore a segmentation-based approach for the calculation of surface plasmon resonance (SPR) on the curved surface with high curvature by modeling it as a contiguous array of finite segments. The approach would significantly facilitate the calculation with good accuracy because of the inherent nature that transfer matrix analysis can be used. Using the segmentation model, resonance characteristics at SPR were obtained as the curvature radius was varied. For validation of the segmentation, resonance wavelength (λ_SPR), reflectance at resonance (R_SPR), and resonance width (δλ_SPR) were compared with the finite element method in the parallel and perpendicular light incidence. It was found that the results from the segmentation were in excellent agreement, λ_SPR in particular, while R_SPR and δλ_SPR under parallel incidence showed disparity between the two models due to the short segmentation. Resonance of curved surface on the rigid and flexible substrate was compared and the overall trend was found to be almost identical. The segmentation is expected to provide a simple, fast, and efficient way for studying plasmonic devices with high curvature in flexible and wearable applications.

Nucleic Acid Tests for Clinical Translation

Nucleic acids, including deoxyribonucleic acid (DNA) and ribonucleic acid (RNA), are natural biopolymers composed of nucleotides that store, transmit, and express genetic information. Overexpressed or underexpressed as well as mutated nucleic acids have been implicated in many diseases. Therefore, nucleic acid tests (NATs) are extremely important. Inspired by intracellular DNA replication and RNA transcription, in vitro NATs have been extensively developed to improve the detection specificity, sensitivity, and simplicity. The principles of NATs can be in general classified into three categories: nucleic acid hybridization, thermal-cycle or isothermal amplification, and signal amplification. Driven by pressing needs in clinical diagnosis and prevention of infectious diseases, NATs have evolved to be a rapidly advancing field. During the past ten years, an explosive increase of research interest in both basic research and clinical translation has been witnessed. In this review, we aim to provide comprehensive coverage of the progress to analyze nucleic acids, use nucleic acids as recognition probes, construct detection devices based on nucleic acids, and utilize nucleic acids in clinical diagnosis and other important fields. We also discuss the new frontiers in the field and the challenges to be addressed.

Nano-antenna synthesis for an arbitrary far-field radiation pattern and polarization based on vector spherical wave functions expansion

A systematic method is proposed to synthesize a nano-antenna based on theoretical principles. This nano-antenna, which is composed of a set of small dielectric spheres, is designed to have a desired far-field radiation pattern and polarization. The basis of the proposed method is expanding all electromagnetic waves into the series of vector spherical wave functions. First, the forward problem of calculation of scattering from single and multiple spheres is studied. For cases with more than one sphere, a multiple scattering method is implemented to calculate total scattering. Near-field and far-field waves, absorption, extinction, and differential scattering cross sections are calculated for a single sphere with different sizes and permittivities. Moreover, far-field waves for linear arrays of small spheres are analyzed. All results are validated using an electromagnetic simulation software. Next, the problem of inverse scattering begins by considering a three-dimensional arbitrary pattern and polarization. The aim is to find a set of spheres that generates this pattern. Particle swarm optimization and non-iterative spectral-domain forward scattering methods are combined as a novel method to find the optimal positions of the spheres.

Point-of-Need DNA Testing for Detection of Foodborne Pathogenic Bacteria

Foodborne pathogenic bacteria present a crucial food safety issue. Conventional diagnostic methods are time-consuming and can be only performed on previously produced food. The advancing field of point-of-need diagnostic devices integrating molecular methods, biosensors, microfluidics, and nanomaterials offers new avenues for swift, low-cost detection of pathogens with high sensitivity and specificity. These analyses and screening of food items can be performed during all phases of production. This review presents major developments achieved in recent years in point-of-need diagnostics in land-based sector and sheds light on current challenges in achieving wider acceptance of portable devices in the food industry. Particular emphasis is placed on methods for testing nucleic acids, protocols for portable nucleic acid extraction and amplification, as well as on the means for low-cost detection and read-out signal amplification.

Effective optical properties of nanoparticle-mediated surface plasmon resonance sensors

We investigate effective medium properties of nanoparticles (NPs) in surface plasmon (SP) resonance detection. Attention was paid to the effective medium characteristics with respect to the particle distribution in equally spaced, aggregated, and intermediate models, although effects of other parameters such as size, material, and concentration were also explored. The results suggest that the distribution may cause significant measurement deviation by as much as 20% for gold NPs and less than 5% for silica. Particle concentration showed complicated dependence in the effective medium. Different mechanisms were observed to govern effective medium properties of dielectric and metal NPs, SP mode transition and multiple scattering for silica NPs. In contrast, metal damping dominated resonance characteristics for gold NPs. The results are expected to provide fresh insights on how to apply an effective medium and interpret measured data in SP resonance sensors and beyond.

Metal Nanoparticles/Porous Silicon Microcavity Enhanced Surface Plasmon Resonance Fluorescence for the Detection of DNA

A porous silicon microcavity (PSiMC) with resonant peak wavelength of 635 nm was fabricated by electrochemical etching. Metal nanoparticles (NPs)/PSiMC enhanced fluorescence substrates were prepared by the electrostatic adherence of Au NPs that were distributed in PSiMC. The Au NPs/PSiMC device was used to characterize the target DNA immobilization and hybridization with its complementary DNA sequences marked with Rhodamine red (RRA). Fluorescence enhancement was observed on the Au NPs/PSiMC device substrate; and the minimum detection concentration of DNA ran up to 10 pM. The surface plasmon resonance (SPR) of the MC substrate; which is so well-positioned to improve fluorescence enhancement rather the fluorescence enhancement of the high reflection band of the Bragg reflector; would welcome such a highly sensitive in biosensor.

Plasmon-Coupled Whispering Gallery Modes on Nanodisk Arrays for Signal Enhancements

Metallic nanostructures including single and double nanodisks are successfully used to enhance the localized electric field in vicinity of microcavity in whispering gallery mode (WGM) sensor. We demonstrate numerical calculations of plasmonic coupling of WGMs to single and double nanodisk arrays on a planar substrate. We then experimentally confirmed that the resonance wavelength of WGM sensor was dramatically shifted by adoption of single and double nanodisks on the surface of microcavity in the WGM sensor. Thus, our approach provides the tunable sensitivity of WGM sensor, and has a great potential to be used in numerous areas where the single biomolecule, protein-protein folding and biomolecular interactions are involved.

Blazed wire-grid polarizer for plasmon-enhanced polarization extinction: design and analysis

We explore plasmon-enhanced wire-gird polarizers (WGPs) to achieve improved polarimetric performance with more relaxed fabrication parameters compared to conventional WGP. A WGP designed with a blazed wire-grid profile was considered for plasmonic enhancement. The results show that a blazed WGP can achieve extremely high polarimetric extinction at a longer wire-grid period (Λ) compared to conventional WGP structure. Under the optimum geometrical parameters, a blazed WGP may attain an extinction ratio of over 40 dB at Λ = 800 nm, which may allow photolithography for fabrication. In contrast, conventional WGPs obtained comparable performance at Λ = 200 nm, requiring more difficult lithographic techniques. The study can therefore be of significant importance for WGPs to be more widely available for diverse applications.

Curvature effects on flexible surface plasmon resonance biosensing: segmented-wave analysis

We investigate the effect of surface curvature on characteristics of flexible surface plasmon resonance biosensors. For simplified analysis, segmentation-based approximation of curved substrates has been conducted in a range of curvature radius |r| > 225 μm in the parallel and perpendicular light incidence with respect to the surface. The results suggest that resonance characteristics in general broaden with increased curvature due to larger momentum dispersion, the effect of which appears more prominent and direct in the parallel light incidence. Resonance shifts as a result of biosensing, such as DNA immobilization and hybridization, overall decrease with curvature and perpendicular incidence is more robust with a curvature change. The approach was extended to multi-curvature structure and finds significant fluctuation of resonance shift for parallel light incidence. The study can be of profound importance for plasmonic devices using flexible substrates and in fiber-based in vivo applications.

Probabilistic evaluation of surface-enhanced localized surface plasmon resonance biosensing

In this paper, we investigate detection characteristics of localized surface plasmon resonance biosensing based on a probabilistic Poisson distribution of target molecules. The model uses random nanoislands for localization of near-fields in three detection scenarios of non-specific, non-colocalized, and colocalized detection. Optical signatures were found to increase monotonically with target concentration and size regardless of the detection scenarios. The signatures were largest in colocalized detection of target interactions to localized fields, followed by non-colocalized and non-specific detection. The confidence interval was the narrowest in the colocalized detection due to the increased spatial certainty by localization. Based on the relative confidence interval, it was found that limit of detection can be enhanced by more than four orders of magnitude through colocalization.

Effect of coupled graphene oxide on the sensitivity of surface plasmon resonance detection

We investigated graphene-oxide-(GO-) coupled surface plasmon resonance (SPR) detection sensitivity for sandwiched antigen-antibody interaction between human and antihuman immunoglobulin G molecules. GO was prepared in a Langmuir-Blodgett solution on gold and dielectric surfaces. Theoretical and experimental data suggest that an increased dielectric spacer thickness reduces resonance shifts for GO-coupled SPR detection as dielectric properties of GO appear to prevail. In general, a metal-enhanced structure was shown to provide a larger resonance shift by plasmonic field enhancement. The far-field properties were described in terms of near-field overlap. The peak resonance shift that was obtained with GO-coupled SPR detection was enhanced to 113% of the resonance shift obtained by conventional thin-film-based SPR detection and may further be improved by GO stacking.

Nanomaterials enhanced surface plasmon resonance for biological and chemical sensing applications

The main challenge for all electrical, mechanical and optical sensors is to detect low molecular weight (less than 400 Da) chemical and biological analytes under extremely dilute conditions. Surface plasmon resonance sensors are the most commonly used optical sensors due to their unique ability for real-time monitoring the molecular binding events. However, their sensitivities are insufficient to detect trace amounts of small molecular weight molecules such as cancer biomarkers, hormones, antibiotics, insecticides, and explosive materials which are respectively important for early-stage disease diagnosis, food quality control, environmental monitoring, and homeland security protection. With the rapid development of nanotechnology in the past few years, nanomaterials-enhanced surface plasmon resonance sensors have been developed and used as effective tools to sense hard-to-detect molecules within the concentration range between pmol and amol. In this review article, we reviewed and discussed the latest trend and challenges in engineering and applications of nanomaterials-enhanced surface plasmon resonance sensors (e.g., metallic nanoparticles, magnetic nanoparticles, carbon-based nanomaterials, latex nanoparticles and liposome nanoparticles) for detecting "hard-to-identify" biological and chemical analytes. Such information will be viable in terms of providing a useful platform for designing future ultrasensitive plasmonic nanosensors.

Label free DNA detection based on gold nanoparticles quenching fluorescence of Rhodamine B

A novel and sensitive label free DNA detection method using gold nanoparticles (GNPs) and Rhodamine B (RB) has been developed. The assay is based on the following two properties. One is the different adsorption properties of single-stranded and double-stranded DNA on GNPs in colloidal solution. The other is the different quenching ability of aggregated GNPs and dispersed GNPs on RB. Un-aggregated GNPs could effectively quench the fluorescence of RB. However, the quenching ability greatly decreases after GNPs aggregated. The hybridization of probe DNA and target DNA is monitored by the fluorescence detection after the RB is added to the solution. Under the optimal experimental conditions, the detection limit of this assay is 2.9×10(-13) mol L(-1).

Colocalization of gold nanoparticle-conjugated DNA hybridization for enhanced surface plasmon detection using nanograting antennas

We have investigated enhanced surface plasmon resonance detection through colocalization of gold nanoparticle (GNP)-conjugated target molecules and near-fields established by nanograting-based antennas. The target colocalization was implemented by angled dielectric thin-film deposition on the nanograting structure. The concept was tested by detecting DNA hybridization and shows that the colocalization produces an additional 60%-80% increase of resonance shifts. The colocalization involves a much smaller number of target molecules, so that the measured enhancement per molecule by the colocalization of GNP-conjugated DNA oligomers was estimated to be by more than 2 orders of magnitude relative to that of thin-film-based conventional detection.

Theory and applications of surface plasmon resonance, resonant mirror, resonant waveguide grating, and dual polarization interferometry biosensors

Biosensors have been used extensively in the scientific community for several purposes, most notably to determine association and dissociation kinetics, protein-ligand, protein-protein, or nucleic acid hybridization interactions. A number of different types of biosensors are available in the field, each with real or perceived benefits over the others. This review discusses the basic theory and operational arrangements of four commercially available types of optical biosensors: surface plasmon resonance, resonant mirror, resonance waveguide grating, and dual polarization interferometry. The different applications these techniques offer are discussed from experiments and results reported in recently published literature. Additionally, recent advancements or modifications to the current techniques are also discussed.