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Bishop KW, Hu B, Vyawhare R, Yang Z, Liang DC, Gao G, Baraznenok E, Han Q, Lan L, Chow SSL, Sanai N, Liu JTC. Miniature line-scanned dual-axis confocal microscope for versatile clinical use. BIOMEDICAL OPTICS EXPRESS 2023; 14:6048-6059. [PMID: 38021137 PMCID: PMC10659777 DOI: 10.1364/boe.503478] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Revised: 10/17/2023] [Accepted: 10/18/2023] [Indexed: 12/01/2023]
Abstract
A miniature optical-sectioning fluorescence microscope with high sensitivity and resolution would enable non-invasive and real-time tissue inspection, with potential use cases including early disease detection and intraoperative guidance. Previously, we developed a miniature MEMS-based dual-axis confocal (DAC) microscope that enabled video-rate optically sectioned in vivo microscopy of human tissues. However, the device's clinical utility was limited due to a small field of view, a non-adjustable working distance, and a lack of a sterilization strategy. In our latest design, we have made improvements to achieve a 2x increase in the field of view (600 × 300 µm) and an adjustable working distance range of 150 µm over a wide range of excitation/emission wavelengths (488-750 nm), all while maintaining a high frame rate of 15 frames per second (fps). Furthermore, the device is designed to image through a disposable sterile plastic drape for convenient clinical use. We rigorously characterize the performance of the device and show example images of ex vivo tissues to demonstrate the optical performance of our new design, including fixed mouse skin and human prostate, as well as fresh mouse kidney, mouse intestine, and human head and neck surgical specimens with corresponding H&E histology. These improvements will facilitate clinical testing and translation.
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Affiliation(s)
- Kevin W. Bishop
- Department of Bioengineering, University of Washington, Seattle, WA 98195, USA
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA
| | - Bingwen Hu
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA
| | - Rajat Vyawhare
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA
| | - Zelin Yang
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA
| | - David C. Liang
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA
| | - Gan Gao
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA
| | - Elena Baraznenok
- Department of Bioengineering, University of Washington, Seattle, WA 98195, USA
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA
| | - Qinghua Han
- Department of Bioengineering, University of Washington, Seattle, WA 98195, USA
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA
| | - Lydia Lan
- Department of Bioengineering, University of Washington, Seattle, WA 98195, USA
- Department of Biology, University of Washington, Seattle, Washington 98195, USA
| | - Sarah S. L. Chow
- Department of Bioengineering, University of Washington, Seattle, WA 98195, USA
| | - Nader Sanai
- Ivy Brain Tumor Center, Barrow Neurological Institute, St. Joseph’s Hospital and Medical Center, Phoenix 85013, AZ, USA
- Department of Neurosurgery, Barrow Neurological Institute, St. Joseph’s Hospital and Medical Center, Phoenix 85013, AZ, USA
| | - Jonathan T. C. Liu
- Department of Bioengineering, University of Washington, Seattle, WA 98195, USA
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA
- Department of Laboratory Medicine & Pathology, University of Washington, Seattle, WA 98195, USA
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2
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Shirazi A, Sahraeibelverdi T, Lee M, Li H, Yu J, Jaiswal S, Oldham KR, Wang TD. Miniature side-view dual axes confocal endomicroscope for repetitive in vivo imaging. BIOMEDICAL OPTICS EXPRESS 2023; 14:4277-4295. [PMID: 37799693 PMCID: PMC10549747 DOI: 10.1364/boe.494210] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 06/17/2023] [Accepted: 06/28/2023] [Indexed: 10/07/2023]
Abstract
A side-view dual axes confocal endomicroscope is demonstrated that can be inserted repetitively in hollow organs of genetically engineered mice for in vivo real-time imaging in horizontal and vertical planes. Near infrared (NIR) excitation at λex = 785 nm was used. A monolithic 3-axis parametric resonance scan mirror was fabricated using micro-electro-mechanical systems (MEMS) technology to perform post-objective scanning in the distal end of a 4.19 mm diameter instrument. Torsional and serpentine springs were designed to "switch" the mode of imaging between vertical and horizontal planes by tuning the actuation frequency. This system demonstrated real-time in-vivo images in horizontal and vertical planes with 310 µm depth and 1.75 and 7.5 µm lateral and axial resolution. Individual cells and discrete mucosal structures could be identified.
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Affiliation(s)
- Ahmad Shirazi
- Division of Integrative Systems and Design,
University of Michigan, Ann Arbor, MI
48109, USA
| | | | - Miki Lee
- Department of Internal Medicine, Division
of Gastroenterology, University of
Michigan, Ann Arbor, MI 48109, USA
| | - Haijun Li
- Department of Internal Medicine, Division
of Gastroenterology, University of
Michigan, Ann Arbor, MI 48109, USA
| | - Joonyoung Yu
- Department of Mechanical Engineering,
University of Michigan, Ann Arbor, MI
48109, USA
| | - Sangeeta Jaiswal
- Department of Internal Medicine, Division
of Gastroenterology, University of
Michigan, Ann Arbor, MI 48109, USA
| | - Kenn R Oldham
- Department of Mechanical Engineering,
University of Michigan, Ann Arbor, MI
48109, USA
| | - Thomas D Wang
- Department of Mechanical Engineering,
University of Michigan, Ann Arbor, MI
48109, USA
- Department of Internal Medicine, Division
of Gastroenterology, University of
Michigan, Ann Arbor, MI 48109, USA
- Department of Biomedical Engineering,
University of Michigan, Ann Arbor, MI
48109, USA
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3
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Role of incident beam shape on spatiotemporal photothermal temperatures for various nanoparticle concentrations for plasmonic photothermal cancer therapeutics. APPLIED NANOSCIENCE 2022. [DOI: 10.1007/s13204-022-02586-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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4
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Chen W, Natan RG, Yang Y, Chou SW, Zhang Q, Isacoff EY, Ji N. In vivo volumetric imaging of calcium and glutamate activity at synapses with high spatiotemporal resolution. Nat Commun 2021; 12:6630. [PMID: 34785691 PMCID: PMC8595604 DOI: 10.1038/s41467-021-26965-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Accepted: 10/27/2021] [Indexed: 12/02/2022] Open
Abstract
Studying neuronal activity at synapses requires high spatiotemporal resolution. For high spatial resolution in vivo imaging at depth, adaptive optics (AO) is required to correct sample-induced aberrations. To improve temporal resolution, Bessel focus has been combined with two-photon fluorescence microscopy (2PFM) for fast volumetric imaging at subcellular lateral resolution. To achieve both high-spatial and high-temporal resolution at depth, we develop an efficient AO method that corrects the distorted wavefront of Bessel focus at the objective focal plane and recovers diffraction-limited imaging performance. Applying AO Bessel focus scanning 2PFM to volumetric imaging of zebrafish larval and mouse brains down to 500 µm depth, we demonstrate substantial improvements in the sensitivity and resolution of structural and functional measurements of synapses in vivo. This enables volumetric measurements of synaptic calcium and glutamate activity at high accuracy, including the simultaneous recording of glutamate activity of apical and basal dendritic spines in the mouse cortex.
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Affiliation(s)
- Wei Chen
- grid.47840.3f0000 0001 2181 7878Department of Physics, University of California, Berkeley, CA 97420 USA
| | - Ryan G. Natan
- grid.47840.3f0000 0001 2181 7878Department of Physics, University of California, Berkeley, CA 97420 USA
| | - Yuhan Yang
- grid.47840.3f0000 0001 2181 7878Department of Physics, University of California, Berkeley, CA 97420 USA
| | - Shih-Wei Chou
- grid.47840.3f0000 0001 2181 7878Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720 USA
| | - Qinrong Zhang
- grid.47840.3f0000 0001 2181 7878Department of Physics, University of California, Berkeley, CA 97420 USA
| | - Ehud Y. Isacoff
- grid.47840.3f0000 0001 2181 7878Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720 USA ,grid.47840.3f0000 0001 2181 7878Helen Wills Neuroscience Institute, University of California, Berkeley, CA 94720 USA ,grid.184769.50000 0001 2231 4551Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
| | - Na Ji
- Department of Physics, University of California, Berkeley, CA, 97420, USA. .,Department of Molecular and Cell Biology, University of California, Berkeley, CA, 94720, USA. .,Helen Wills Neuroscience Institute, University of California, Berkeley, CA, 94720, USA. .,Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
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5
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Liu S, Huh H, Lee SH, Huang F. Three-Dimensional Single-Molecule Localization Microscopy in Whole-Cell and Tissue Specimens. Annu Rev Biomed Eng 2020; 22:155-184. [PMID: 32243765 PMCID: PMC7430714 DOI: 10.1146/annurev-bioeng-060418-052203] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Super-resolution microscopy techniques are versatile and powerful tools for visualizing organelle structures, interactions, and protein functions in biomedical research. However, whole-cell and tissue specimens challenge the achievable resolution and depth of nanoscopy methods. We focus on three-dimensional single-molecule localization microscopy and review some of the major roadblocks and developing solutions to resolving thick volumes of cells and tissues at the nanoscale in three dimensions. These challenges include background fluorescence, system- and sample-induced aberrations, and information carried by photons, as well as drift correction, volume reconstruction, and photobleaching mitigation. We also highlight examples of innovations that have demonstrated significant breakthroughs in addressing the abovementioned challenges together with their core concepts as well as their trade-offs.
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Affiliation(s)
- Sheng Liu
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana 47907, USA;
| | - Hyun Huh
- Institute for Quantitative Biomedicine, Rutgers University, Piscataway, New Jersey 08854, USA
| | - Sang-Hyuk Lee
- Institute for Quantitative Biomedicine, Rutgers University, Piscataway, New Jersey 08854, USA
- Department of Physics and Astronomy, Rutgers University, Piscataway, New Jersey 08854, USA;
| | - Fang Huang
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana 47907, USA;
- Purdue Institute for Integrative Neuroscience, Purdue University, West Lafayette, Indiana 47907, USA
- Purdue Institute of Inflammation, Immunology, and Infectious Disease, Purdue University, West Lafayette, Indiana 47907, USA
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6
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Hua X, Guo C, Wang J, Kim-Holzapfel D, Schroeder B, Liu W, Yuan J, French J, Jia S. Depth-extended, high-resolution fluorescence microscopy: whole-cell imaging with double-ring phase (DRiP) modulation. BIOMEDICAL OPTICS EXPRESS 2019; 10:204-214. [PMID: 30775094 PMCID: PMC6363204 DOI: 10.1364/boe.10.000204] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2018] [Revised: 11/09/2018] [Accepted: 11/30/2018] [Indexed: 06/09/2023]
Abstract
We report a depth-extended, high-resolution fluorescence microscopy system based on interfering Bessel beams generated with double-ring phase (DRiP) modulation. The DRiP method effectively suppresses the Bessel side lobes, exhibiting a high resolution of the main lobe throughout a four- to five-fold improved depth of focus (DOF), compared to conventional wide-field microscopy. We showed both theoretically and experimentally the generation and propagation of a DRiP point-spread function (DRiP-PSF) of the imaging system. We further developed an approach for creating an axially-uniform DRiP-PSF and successfully demonstrated diffraction-limited, depth-extended imaging of cellular structures. We expect the DRiP method to contribute to the fast-developing field of non-diffracting-beam-enabled optical microscopy and be useful for various types of imaging modalities.
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Affiliation(s)
- Xuanwen Hua
- Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia 30332, USA
| | - Changliang Guo
- Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia 30332, USA
| | - Jian Wang
- Department of Biomedical Engineering, Stony Brook University, Stony Brook, New York 11794, USA
- Department of Physics, Harbin Institute of Technology, Harbin 150001, China
| | - Deborah Kim-Holzapfel
- Department of Biochemistry and Cell Biology and Department of Chemistry, Stony Brook University, Stony Brook, New York 11794, USA
| | - Bryce Schroeder
- Department of Biomedical Engineering, Stony Brook University, Stony Brook, New York 11794, USA
- Medical Scientist Training Program, School of Medicine, Stony Brook University, Stony Brook, New York 11794, USA
| | - Wenhao Liu
- Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia 30332, USA
| | - Junhua Yuan
- Department of Physics, University of Science and Technology of China, Hefei 230026, China
| | - Jarrod French
- Department of Biochemistry and Cell Biology and Department of Chemistry, Stony Brook University, Stony Brook, New York 11794, USA
| | - Shu Jia
- Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia 30332, USA
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7
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Wei L, Yin C, Liu JTC. Dual-axis confocal microscopy for point-of-care pathology. IEEE JOURNAL OF SELECTED TOPICS IN QUANTUM ELECTRONICS : A PUBLICATION OF THE IEEE LASERS AND ELECTRO-OPTICS SOCIETY 2019; 25:7100910. [PMID: 30872909 PMCID: PMC6411089 DOI: 10.1109/jstqe.2018.2854572] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Dual-axis confocal (DAC) microscopy is an optical imaging modality that utilizes simple low-numerical aperture (NA) lenses to achieve effective optical sectioning and superior image contrast in biological tissues. The unique architecture of DAC microscopy also provides some advantages for miniaturization, facilitating the development of endoscopic and handheld DAC systems for in vivo imaging. This article reviews the principles of DAC microscopy, including its differences from conventional confocal microscopy, and surveys several variations of DAC microscopy that have been developed and investigated as non-invasive real-time alternatives to conventional biopsy and histopathology.
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Affiliation(s)
- Linpeng Wei
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195 USA, JTCL is also with the Department of Pathology at the University of Washington
| | - Chengbo Yin
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195 USA, JTCL is also with the Department of Pathology at the University of Washington
| | - Jonathan T C Liu
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195 USA, JTCL is also with the Department of Pathology at the University of Washington
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8
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Nylk J, McCluskey K, Preciado MA, Mazilu M, Yang Z, Gunn-Moore FJ, Aggarwal S, Tello JA, Ferrier DEK, Dholakia K. Light-sheet microscopy with attenuation-compensated propagation-invariant beams. SCIENCE ADVANCES 2018; 4:eaar4817. [PMID: 29740614 PMCID: PMC5938225 DOI: 10.1126/sciadv.aar4817] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2017] [Accepted: 02/15/2018] [Indexed: 05/18/2023]
Abstract
Scattering and absorption limit the penetration of optical fields into tissue. We demonstrate a new approach for increased depth penetration in light-sheet microscopy: attenuation-compensation of the light field. This tailors an exponential intensity increase along the illuminating propagation-invariant field, enabling the redistribution of intensity strategically within a sample to maximize signal and minimize irradiation. A key attribute of this method is that only minimal knowledge of the specimen transmission properties is required. We numerically quantify the imaging capabilities of attenuation-compensated Airy and Bessel light sheets, showing that increased depth penetration is gained without compromising any other beam attributes. This powerful yet straightforward concept, combined with the self-healing properties of the propagation-invariant field, improves the contrast-to-noise ratio of light-sheet microscopy up to eightfold across the entire field of view in thick biological specimens. This improvement can significantly increase the imaging capabilities of light-sheet microscopy techniques using Airy, Bessel, and other propagation-invariant beam types, paving the way for widespread uptake by the biomedical community.
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Affiliation(s)
- Jonathan Nylk
- Scottish Universities Physics Alliance, School of Physics and Astronomy, University of St. Andrews, North Haugh, St. Andrews, Fife KY16 9SS, UK
- Corresponding author.
| | - Kaley McCluskey
- Scottish Universities Physics Alliance, School of Physics and Astronomy, University of St. Andrews, North Haugh, St. Andrews, Fife KY16 9SS, UK
| | - Miguel A. Preciado
- Scottish Universities Physics Alliance, School of Physics and Astronomy, University of St. Andrews, North Haugh, St. Andrews, Fife KY16 9SS, UK
| | - Michael Mazilu
- Scottish Universities Physics Alliance, School of Physics and Astronomy, University of St. Andrews, North Haugh, St. Andrews, Fife KY16 9SS, UK
| | - Zhengyi Yang
- Scottish Universities Physics Alliance, School of Physics and Astronomy, University of St. Andrews, North Haugh, St. Andrews, Fife KY16 9SS, UK
| | - Frank J. Gunn-Moore
- School of Biology, University of St. Andrews, North Haugh, St. Andrews, Fife KY16 9ST, UK
| | - Sanya Aggarwal
- School of Medicine, University of St. Andrews, North Haugh, St. Andrews, Fife KY16 9ST, UK
| | - Javier A. Tello
- School of Medicine, University of St. Andrews, North Haugh, St. Andrews, Fife KY16 9ST, UK
| | - David E. K. Ferrier
- Scottish Oceans Institute, Gatty Marine Laboratory, School of Biology, University of St. Andrews, East Sands, St. Andrews, Fife KY16 8LB, UK
| | - Kishan Dholakia
- Scottish Universities Physics Alliance, School of Physics and Astronomy, University of St. Andrews, North Haugh, St. Andrews, Fife KY16 9SS, UK
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9
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Chen Y, Glaser A, Liu JT. Bessel-beam illumination in dual-axis confocal microscopy mitigates resolution degradation caused by refractive heterogeneities. JOURNAL OF BIOPHOTONICS 2017; 10:68-74. [PMID: 27667127 PMCID: PMC5243863 DOI: 10.1002/jbio.201600196] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2016] [Revised: 09/07/2016] [Accepted: 09/11/2016] [Indexed: 05/30/2023]
Abstract
One of the main challenges for laser-scanning microscopy of biological tissues with refractive heterogeneities is the degradation in spatial resolution that occurs as a result of beam steering and distortion. This challenge is particularly significant for dual-axis confocal (DAC) microscopy, which achieves improved spatial-filtering and optical-sectioning performance over traditional confocal microscopy through off-axis illumination and collection of light with low-numerical aperture (NA) beams that must intersect precisely at their foci within tissues. DAC microscope image quality is sensitive to positional changes and distortions of these illumination- and collection-beam foci. Previous studies have shown that Bessel beams display improved positional stability and beam quality than Gaussian beams when propagating through tissues with refractive heterogeneities, which suggests that Bessel-beam illumination may enhance DAC microscopy of such tissues. Here, we utilize both Gaussian and Bessel illumination in a point-scanned DAC microscope and quantify the resultant degradation in resolution when imaging within heterogeneous optical phantoms and fresh tissues. Results indicate that DAC microscopy with Bessel illumination exhibits reduced resolution degradation from microscopic tissue heterogeneities compared to DAC microscopy with conventional Gaussian illumination.
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Affiliation(s)
- Ye Chen
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA
| | - Adam Glaser
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA
| | - Jonathan T.C. Liu
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA
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10
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Nylk J, McCluskey K, Aggarwal S, Tello JA, Dholakia K. Enhancement of image quality and imaging depth with Airy light-sheet microscopy in cleared and non-cleared neural tissue. BIOMEDICAL OPTICS EXPRESS 2016; 7:4021-4033. [PMID: 27867712 PMCID: PMC5102539 DOI: 10.1364/boe.7.004021] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2016] [Revised: 09/02/2016] [Accepted: 09/05/2016] [Indexed: 05/07/2023]
Abstract
We have investigated the effect of Airy illumination on the image quality and depth penetration of digitally scanned light-sheet microscopy in turbid neural tissue. We used Fourier analysis of images acquired using Gaussian and Airy light-sheets to assess their respective image quality versus penetration into the tissue. We observed a three-fold average improvement in image quality at 50 μm depth with the Airy light-sheet. We also used optical clearing to tune the scattering properties of the tissue and found that the improvement when using an Airy light-sheet is greater in the presence of stronger sample-induced aberrations. Finally, we used homogeneous resolution probes in these tissues to quantify absolute depth penetration in cleared samples with each beam type. The Airy light-sheet method extended depth penetration by 30% compared to a Gaussian light-sheet.
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Affiliation(s)
- Jonathan Nylk
- SUPA, School of Physics and Astronomy, University of St. Andrews, St. Andrews, KY16 9SS,
UK
| | - Kaley McCluskey
- SUPA, School of Physics and Astronomy, University of St. Andrews, St. Andrews, KY16 9SS,
UK
| | - Sanya Aggarwal
- School of Medicine, University of St. Andrews, St. Andrews, KY16 9TF,
UK
| | - Javier A. Tello
- School of Medicine, University of St. Andrews, St. Andrews, KY16 9TF,
UK
| | - Kishan Dholakia
- SUPA, School of Physics and Astronomy, University of St. Andrews, St. Andrews, KY16 9SS,
UK
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11
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Glaser AK, Wang Y, Liu JT. Assessing the imaging performance of light sheet microscopies in highly scattering tissues. BIOMEDICAL OPTICS EXPRESS 2016; 7:454-66. [PMID: 26977355 PMCID: PMC4771464 DOI: 10.1364/boe.7.000454] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2015] [Revised: 01/08/2016] [Accepted: 01/09/2016] [Indexed: 05/03/2023]
Abstract
Light sheet microscopy (LSM) has emerged as an optical-imaging method for high spatiotemporal volumetric imaging of relatively transparent samples. While this capability has allowed the technique to be highly impactful in fields such as developmental biology, applications involving highly scattering thick tissues have been largely unexplored. Herein, we employ Monte Carlo simulations to explore the use of LSM for imaging turbid media. In particular, due to its similarity to dual-axis confocal (DAC) microscopy, we compare LSM performance to point-scanned (PS-DAC) and line-scanned (LS-DAC) dual-axis confocal microscopy techniques that have been previously shown to produce high-quality images at round-trip optical lengths of ~9 - 10 and ~3 - 4 respectively. The results of this study indicate that LSM using widefield collection (WF-LSM) provides comparable performance to LS-DAC in thick tissues, due to the fact that they both utilize an illumination beam focused in one dimension (i.e. a line or sheet). On the other hand, LSM using confocal line detection (CL-LSM) is more analogous to PS-DAC microscopy, in which the illumination beam is focused in two dimensions to a point. The imaging depth of LSM is only slightly inferior to DAC (~2 - 3 and ~6 - 7 optical lengths for WF-LSM and CL-LSM respectively) due to the use of a lower numerical aperture (NA) illumination beam for extended imaging along the illumination axis. Therefore, we conclude that the ability to image deeply is dictated most by the confocality of the microscope technique. In addition, we find that imaging resolution is mostly dependent on the collection NA, and is relatively invariant to imaging depth in a homogeneous scattering medium. Our results indicate that superficial imaging of highly scattering tissues using light sheet microscopy is possible.
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Affiliation(s)
- A. K. Glaser
- Department of Mechanical Engineering, University of Washington, Seattle, WA, USA
| | - Y. Wang
- Department of Mechanical Engineering, University of Washington, Seattle, WA, USA
| | - J. T.C. Liu
- Department of Mechanical Engineering, University of Washington, Seattle, WA, USA
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12
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Glaser AK, Chen Y, Liu JT. Fractal propagation method enables realistic optical microscopy simulations in biological tissues. OPTICA 2016; 3:861-869. [PMID: 28983499 PMCID: PMC5626453 DOI: 10.1364/optica.3.000861] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Current simulation methods for light transport in biological media have limited efficiency and realism when applied to three-dimensional microscopic light transport in biological tissues with refractive heterogeneities. We describe here a technique which combines a beam propagation method valid for modeling light transport in media with weak variations in refractive index, with a fractal model of refractive index turbulence. In contrast to standard simulation methods, this fractal propagation method (FPM) is able to accurately and efficiently simulate the diffraction effects of focused beams, as well as the microscopic heterogeneities present in tissue that result in scattering, refractive beam steering, and the aberration of beam foci. We validate the technique and the relationship between the FPM model parameters and conventional optical parameters used to describe tissues, and also demonstrate the method's flexibility and robustness by examining the steering and distortion of Gaussian and Bessel beams in tissue with comparison to experimental data. We show that the FPM has utility for the accurate investigation and optimization of optical microscopy methods such as light-sheet, confocal, and nonlinear microscopy.
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Affiliation(s)
- Adam K. Glaser
- Department of Mechanical Engineering, University of Washington, Seattle, WA, USA
- Corresponding author:
| | - Ye Chen
- Department of Mechanical Engineering, University of Washington, Seattle, WA, USA
| | - Jonathan T.C. Liu
- Department of Mechanical Engineering, University of Washington, Seattle, WA, USA
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