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Aziz JAB, Smith-Dryden S, E A Saleh B, Li G. Three-dimensional tomographic reconstruction using Voronoi weighting. OPTICS EXPRESS 2024; 32:20256-20267. [PMID: 38859140 DOI: 10.1364/oe.521968] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Accepted: 04/21/2024] [Indexed: 06/12/2024]
Abstract
Three-dimensional tomographic reconstruction requires careful selection of the illumination angles, often under certain measurement constraints. When the angular distribution must be nonuniform, appropriate selection of the reconstruction weights is necessary. We show that Voronoi weighting can significantly improve the fidelity of optical diffraction tomography.
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2
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Verrier N, Debailleul M, Haeberlé O. Recent Advances and Current Trends in Transmission Tomographic Diffraction Microscopy. SENSORS (BASEL, SWITZERLAND) 2024; 24:1594. [PMID: 38475130 DOI: 10.3390/s24051594] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Revised: 02/21/2024] [Accepted: 02/27/2024] [Indexed: 03/14/2024]
Abstract
Optical microscopy techniques are among the most used methods in biomedical sample characterization. In their more advanced realization, optical microscopes demonstrate resolution down to the nanometric scale. These methods rely on the use of fluorescent sample labeling in order to break the diffraction limit. However, fluorescent molecules' phototoxicity or photobleaching is not always compatible with the investigated samples. To overcome this limitation, quantitative phase imaging techniques have been proposed. Among these, holographic imaging has demonstrated its ability to image living microscopic samples without staining. However, for a 3D assessment of samples, tomographic acquisitions are needed. Tomographic Diffraction Microscopy (TDM) combines holographic acquisitions with tomographic reconstructions. Relying on a 3D synthetic aperture process, TDM allows for 3D quantitative measurements of the complex refractive index of the investigated sample. Since its initial proposition by Emil Wolf in 1969, the concept of TDM has found a lot of applications and has become one of the hot topics in biomedical imaging. This review focuses on recent achievements in TDM development. Current trends and perspectives of the technique are also discussed.
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Affiliation(s)
- Nicolas Verrier
- Institut Recherche en Informatique, Mathématiques, Automatique et Signal (IRIMAS UR UHA 7499), Université de Haute-Alsace, IUT Mulhouse, 61 rue Albert Camus, 68093 Mulhouse, France
| | - Matthieu Debailleul
- Institut Recherche en Informatique, Mathématiques, Automatique et Signal (IRIMAS UR UHA 7499), Université de Haute-Alsace, IUT Mulhouse, 61 rue Albert Camus, 68093 Mulhouse, France
| | - Olivier Haeberlé
- Institut Recherche en Informatique, Mathématiques, Automatique et Signal (IRIMAS UR UHA 7499), Université de Haute-Alsace, IUT Mulhouse, 61 rue Albert Camus, 68093 Mulhouse, France
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3
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Wen K, Gao Z, Liu R, Fang X, Ma Y, Zheng J, An S, Kozacki T, Gao P. Structured illumination phase and fluorescence microscopy for bioimaging. APPLIED OPTICS 2023; 62:4871-4879. [PMID: 37707263 DOI: 10.1364/ao.486718] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Accepted: 05/14/2023] [Indexed: 09/15/2023]
Abstract
This study presents a dual-modality microscopic imaging approach that combines quantitative phase microscopy and fluorescence microscopy based on structured illumination (SI) to provide structural and functional information for the same sample. As the first imaging modality, structured illumination digital holographic microscopy (SI-DHM) is implemented along the transmission beam path. SI-DHM acts as a label-free, noninvasive approach and provides high-contrast and quantitative phase images utilizing the refractive index contrast of the inner structures of samples against the background. As the second imaging modality, structured illumination (fluorescence) microscopy (SIM) is constructed along the reflection beam path. SIM utilizes fluorescent labeling and provides super-resolution images for specific functional structures of samples. We first experimentally demonstrated phase imaging of SI-DHM on rice leaves and fluorescence (SIM) imaging on mouse kidney sections. Then, we demonstrated dual-modality imaging of biological samples, using DHM to acquire the overall cell morphology and SIM to obtain specific functional structures. These results prove that the proposed technique is of great importance in biomedical studies, such as providing insight into cell physiology by visualizing and quantifying subcellular structures.
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4
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Abbessi R, Verrier N, Taddese AM, Laroche S, Debailleul M, Lo M, Courbot JB, Haeberlé O. Multimodal image reconstruction from tomographic diffraction microscopy data. J Microsc 2022; 288:193-206. [PMID: 35775607 DOI: 10.1111/jmi.13131] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Revised: 06/18/2022] [Accepted: 06/24/2022] [Indexed: 11/29/2022]
Abstract
Tomographic Diffraction Microscopy (TDM) is a tool of choice for high-resolution, marker-less 3D imaging of biological samples. Based on a generalization of Digital Holographic Microscopy (DHM) with full control of the sample's illumination, TDM measures, from many illumination directions, the diffracted fields in both phase and amplitude. Photon budget associated to TDM imaging is low. Therefore, TDM is not limited by photo-toxicity issues. The recorded information makes it possible to reconstruct 3D refractive index distribution (with both refraction and absorption contributions) of the object under scrutiny, without any staining. In this contribution, we show an alternate use of this information. A tutorial for multimodal image reconstruction is proposed. Both intensity contrasts and phase contrasts are proposed, from the image formation model to the final reconstruction with both 2D and 3D rendering, turning TDM into a kind of "universal" digital microscope. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Riadh Abbessi
- Institut Recherche en Informatique, Mathématiques, Automatique et Signal (IRIMAS UR UHA 7499), Université de Haute-Alsace, IUT Mulhouse, 61 rue Albert Camus, Mulhouse Cedex, 68093, France
| | - Nicolas Verrier
- Institut Recherche en Informatique, Mathématiques, Automatique et Signal (IRIMAS UR UHA 7499), Université de Haute-Alsace, IUT Mulhouse, 61 rue Albert Camus, Mulhouse Cedex, 68093, France
| | - Asemare Mengistie Taddese
- Institut Recherche en Informatique, Mathématiques, Automatique et Signal (IRIMAS UR UHA 7499), Université de Haute-Alsace, IUT Mulhouse, 61 rue Albert Camus, Mulhouse Cedex, 68093, France
| | - Steve Laroche
- Institut Recherche en Informatique, Mathématiques, Automatique et Signal (IRIMAS UR UHA 7499), Université de Haute-Alsace, IUT Mulhouse, 61 rue Albert Camus, Mulhouse Cedex, 68093, France
| | - Matthieu Debailleul
- Institut Recherche en Informatique, Mathématiques, Automatique et Signal (IRIMAS UR UHA 7499), Université de Haute-Alsace, IUT Mulhouse, 61 rue Albert Camus, Mulhouse Cedex, 68093, France
| | - Mohamed Lo
- Institut Recherche en Informatique, Mathématiques, Automatique et Signal (IRIMAS UR UHA 7499), Université de Haute-Alsace, IUT Mulhouse, 61 rue Albert Camus, Mulhouse Cedex, 68093, France
| | - Jean-Baptiste Courbot
- Institut Recherche en Informatique, Mathématiques, Automatique et Signal (IRIMAS UR UHA 7499), Université de Haute-Alsace, IUT Mulhouse, 61 rue Albert Camus, Mulhouse Cedex, 68093, France
| | - Olivier Haeberlé
- Institut Recherche en Informatique, Mathématiques, Automatique et Signal (IRIMAS UR UHA 7499), Université de Haute-Alsace, IUT Mulhouse, 61 rue Albert Camus, Mulhouse Cedex, 68093, France
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Trolinger JD, Mansoor MM. History and metrology applications of a game-changing technology: digital holography [Invited]. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2022; 39:A29-A43. [PMID: 35200948 DOI: 10.1364/josaa.440610] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2021] [Accepted: 11/08/2021] [Indexed: 06/14/2023]
Abstract
In digital holography (DH), information in the hologram is recorded and stored in digital format in discrete bits. Like its parent, holography, DH evolved over many years with periods of dormancy and revival. Almost abandoned, multiple times, unanticipated events or developments in separate industries revived it with explosive, quantum jumps, making it useful and popular to a wide audience. Although its history has been treated in many papers and books, the field is dynamic and constantly providing new opportunities. Having been born long before low-cost, fast, powerful digital computers and digital detectors were available, DH was confined to the academic world, where practical applications and commercial opportunities were few if any. Consumer demand that led to low-cost personal computers, high-resolution digital cameras, supporting software, and related products changed the situation drastically by providing every potential researcher affordable, powerful hardware and software needed to apply image processing algorithms and move DH to new practical application levels. In this paper, as part of the sixtieth anniversary of off-axis holography, we include a brief introduction to the fundamentals of DH and examine the history and evolution of DH during its periods of rise and fall. We summarize many new emerging techniques, applications, and potential future applications along with additional details for metrological examples from the authors' research.
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Zdańkowski P, Winnik J, Patorski K, Gocłowski P, Ziemczonok M, Józwik M, Kujawińska M, Trusiak M. Common-path intrinsically achromatic optical diffraction tomography. BIOMEDICAL OPTICS EXPRESS 2021; 12:4219-4234. [PMID: 34457410 PMCID: PMC8367224 DOI: 10.1364/boe.428828] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Revised: 06/05/2021] [Accepted: 06/07/2021] [Indexed: 06/13/2023]
Abstract
In this work we propose an open-top like common-path intrinsically achromatic optical diffraction tomography system. It operates as a total-shear interferometer and employs Ronchi-type amplitude diffraction grating, positioned in between the camera and the tube lens without an additional 4f system, generating three-beam interferograms with achromatic second harmonic. Such configuration makes the proposed system low cost, compact and immune to vibrations. We present the results of the measurements of 3D-printed cell phantom using laser diode (coherent) and superluminescent diode (partially coherent) light sources. Broadband light sources can be naturally employed without the need for any cumbersome compensation because of the intrinsic achromaticity of the interferometric recording (holograms generated by -1st and +1st conjugated diffraction orders are not affected by the illumination wavelength). The results show that the decreased coherence offers much reduced coherent noise and higher fidelity tomographic reconstruction especially when applied nonnegativity constraint regularization procedure.
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Affiliation(s)
- Piotr Zdańkowski
- Warsaw University of Technology, Institute of Micromechanics and Photonics, 8 Św. A. Boboli st., 02-525 Warsaw, Poland
- These authors contributed equally to this work
| | - Julianna Winnik
- Warsaw University of Technology, Institute of Micromechanics and Photonics, 8 Św. A. Boboli st., 02-525 Warsaw, Poland
- These authors contributed equally to this work
| | - Krzysztof Patorski
- Warsaw University of Technology, Institute of Micromechanics and Photonics, 8 Św. A. Boboli st., 02-525 Warsaw, Poland
| | - Paweł Gocłowski
- Warsaw University of Technology, Institute of Micromechanics and Photonics, 8 Św. A. Boboli st., 02-525 Warsaw, Poland
| | - Michał Ziemczonok
- Warsaw University of Technology, Institute of Micromechanics and Photonics, 8 Św. A. Boboli st., 02-525 Warsaw, Poland
| | - Michał Józwik
- Warsaw University of Technology, Institute of Micromechanics and Photonics, 8 Św. A. Boboli st., 02-525 Warsaw, Poland
| | - Małgorzata Kujawińska
- Warsaw University of Technology, Institute of Micromechanics and Photonics, 8 Św. A. Boboli st., 02-525 Warsaw, Poland
| | - Maciej Trusiak
- Warsaw University of Technology, Institute of Micromechanics and Photonics, 8 Św. A. Boboli st., 02-525 Warsaw, Poland
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7
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Lu CW, Belashov AV, Zhikhoreva AA, Semenova IV, Cheng CJ, Su LY, Wu CH. Application of digital holographic tomography in antitumor effect of cantharides complex on 4T1 breast cancer cells. APPLIED OPTICS 2021; 60:3365-3373. [PMID: 33983241 DOI: 10.1364/ao.416943] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2020] [Accepted: 03/22/2021] [Indexed: 06/12/2023]
Abstract
The study focuses on a methodology providing noninvasive monitoring and evaluation of the antitumor effect of traditional Chinese medicine, cantharides complex (canth), on 4T1 breast tumor cells. Digital holographic tomography (DHT) and developed data post-processing algorithms were used for quantitative estimation of changes in optical and morphological parameters of cells. We calculated and compared data on the refractive index, thickness, and projected area of 4T1 breast tumor cells in control untreated specimens and those treated with doxorubicin hydrochloride (DOX), canth, and their combinations. Post-treatment changes in cellular morphology recorded by DHT demonstrated that the two drugs led to noticeably different morphological changes in cells that can be presumably associated with different pathways of their death, apoptosis, or necrosis. The effect of combined treatment with these two drugs strongly depended on their relative concentrations and could lead to changes characteristic either for DOX or for canth; however, being more profound than those obtained when using each drug solely. The results obtained by DHT are in a good correspondence with commonly used cell viability analysis and immunofluorescent analysis of changes in cellular cytoskeleton.
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8
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Balasubramani V, Kuś A, Tu HY, Cheng CJ, Baczewska M, Krauze W, Kujawińska M. Holographic tomography: techniques and biomedical applications [Invited]. APPLIED OPTICS 2021; 60:B65-B80. [PMID: 33798138 DOI: 10.1364/ao.416902] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Accepted: 01/20/2021] [Indexed: 05/23/2023]
Abstract
Holographic tomography (HT) is an advanced label-free optical microscopic imaging method used for biological studies. HT uses digital holographic microscopy to record the complex amplitudes of a biological sample as digital holograms and then numerically reconstruct the sample's refractive index (RI) distribution in three dimensions. The RI values are a key parameter for label-free bio-examination, which correlate with metabolic activities and spatiotemporal distribution of biophysical parameters of cells and their internal organelles, tissues, and small-scale biological objects. This article provides insight on this rapidly growing HT field of research and its applications in biology. We present a review summary of the HT principle and highlight recent technical advancement in HT and its applications.
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Baczewska M, Eder K, Ketelhut S, Kemper B, Kujawińska M. Refractive Index Changes of Cells and Cellular Compartments Upon Paraformaldehyde Fixation Acquired by Tomographic Phase Microscopy. Cytometry A 2021; 99:388-398. [PMID: 32959478 PMCID: PMC8048569 DOI: 10.1002/cyto.a.24229] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Revised: 07/28/2020] [Accepted: 08/25/2020] [Indexed: 12/11/2022]
Abstract
Three-dimensional quantitative phase imaging is an emerging method, which provides the 3D distribution of the refractive index (RI) and the dry mass in live and fixed cells as well as in tissues. However, an insufficiently answered question is the influence of chemical cell fixation procedures on the results of RI reconstructions. Therefore, this work is devoted to systematic investigations on the RI in cellular organelles of live and fixed cells including nucleus, nucleolus, nucleoplasm, and cytoplasm. The research was carried out on four different cell lines using a common paraformaldehyde (PFA)-based fixation protocol. The selected cell types represent the diversity of mammalian cells and therefore the results presented provide a picture of fixation caused RI changes in a broader context. A commercial Tomocube HT-1S device was used for 3D RI acquisition. The changes in the RI values after the fixation process are detected in the reconstructed phase distributions and amount to the order of 10-3 . The RI values decrease and the observed RI changes are found to be different between various cell lines; however, all of them show the most significant loss in the nucleolus. In conclusion, our study demonstrates the evident need for standardized preparation procedures in phase tomographic measurements. © 2020 The Authors. Cytometry Part A published by Wiley Periodicals LLC. on behalf of International Society for Advancement of Cytometry.
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Affiliation(s)
- Maria Baczewska
- Warsaw University of Technology, Institute of Micromechanics and Photonics, Sw. Boboli 8 St.Warsaw02‐525Poland
| | - Kai Eder
- Biomedical Technology Center of the Medical Faculty, University of Muenster Mendelstr 17MuensterD‐48149Germany
| | - Steffi Ketelhut
- Biomedical Technology Center of the Medical Faculty, University of Muenster Mendelstr 17MuensterD‐48149Germany
| | - Björn Kemper
- Biomedical Technology Center of the Medical Faculty, University of Muenster Mendelstr 17MuensterD‐48149Germany
| | - Małgorzata Kujawińska
- Warsaw University of Technology, Institute of Micromechanics and Photonics, Sw. Boboli 8 St.Warsaw02‐525Poland
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Balasubramani V, Montresor S, Tu HY, Huang CH, Picart P, Cheng CJ. Influence of noise-reduction techniques in sparse-data sample rotation tomographic imaging. APPLIED OPTICS 2021; 60:B81-B87. [PMID: 33798139 DOI: 10.1364/ao.415284] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2020] [Accepted: 01/31/2021] [Indexed: 06/12/2023]
Abstract
Data acquisition and processing is a critical issue for high-speed applications, especially in three-dimensional live cell imaging and analysis. This paper focuses on sparse-data sample rotation tomographic reconstruction and analysis with several noise-reduction techniques. For the sample rotation experiments, a live Candida rugosa sample is used and controlled by holographic optical tweezers, and the transmitted complex wavefronts of the sample are recorded with digital holographic microscopy. Three different cases of sample rotation tomography were reconstructed for dense angle with a step rotation at every 2°, and for sparse angles with step rotation at every 5° and 10°. The three cases of tomographic reconstruction performance are analyzed with consideration for data processing using four noise-reduction techniques. The experimental results demonstrate potential capability in retaining the tomographic image quality, even at the sparse angle reconstructions, with the help of noise-reduction techniques.
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Lee C, Kim S, Hugonnet H, Lee M, Park W, Jeon JS, Park Y. Label-free three-dimensional observations and quantitative characterisation of on-chip vasculogenesis using optical diffraction tomography. LAB ON A CHIP 2021; 21:494-501. [PMID: 33492325 DOI: 10.1039/d0lc01061h] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Label-free, three-dimensional (3D) quantitative observations of on-chip vasculogenesis were achieved using optical diffraction tomography. Exploiting 3D refractive index maps as an intrinsic imaging contrast, the vascular structures, multicellular activities, and subcellular organelles of endothelial cells were imaged and analysed throughout vasculogenesis to characterise mature vascular networks without exogenous labelling.
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Affiliation(s)
- Chungha Lee
- Department of Physics, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea
| | - Seunggyu Kim
- Department of Mechanical Engineering, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.
| | - Herve Hugonnet
- Department of Physics, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea
| | - Moosung Lee
- Department of Physics, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea
| | - Weisun Park
- Department of Physics, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea
| | - Jessie S Jeon
- Department of Mechanical Engineering, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea. and KAIST Institute for Health Science and Technology, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea
| | - YongKeun Park
- Department of Physics, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea and KAIST Institute for Health Science and Technology, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea and Tomocube Inc., Daejeon, 34109, Republic of Korea
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12
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Fan S, Smith-Dryden S, Li G, Saleh B. Iterative optical diffraction tomography for illumination scanning configuration. OPTICS EXPRESS 2020; 28:39904-39915. [PMID: 33379529 DOI: 10.1364/oe.413230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Accepted: 11/21/2020] [Indexed: 06/12/2023]
Abstract
Optical diffraction tomography (ODT) is used to reconstruct refractive-index distributions from multiple measurements in the object rotating configuration (ORC) or the illumination scanning configuration (ISC). Because of its fast data acquisition and stability, ISC-based ODT has been widely used for biological imaging. ODT typically fails to reconstruct multiply-scattering samples. The previously developed iterative ODT (iODT) was for the multiply-scattering objects in ORC, and could not be directly applied to ISC. To resolve this mismatch, we developed an ISC update and numerically demonstrated its accuracy. With the same prior knowledge, iODT-ISC outperforms conventional ODT in resolving the missing-angle problem.
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Trusiak M, Cywińska M, Micó V, Picazo-Bueno JÁ, Zuo C, Zdańkowski P, Patorski K. Variational Hilbert Quantitative Phase Imaging. Sci Rep 2020; 10:13955. [PMID: 32811839 PMCID: PMC7435195 DOI: 10.1038/s41598-020-69717-1] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Accepted: 07/15/2020] [Indexed: 11/09/2022] Open
Abstract
Utilizing the refractive index as the endogenous contrast agent to noninvasively study transparent cells is a working principle of emerging quantitative phase imaging (QPI). In this contribution, we propose the Variational Hilbert Quantitative Phase Imaging (VHQPI)-end-to-end purely computational add-on module able to improve performance of a QPI-unit without hardware modifications. The VHQPI, deploying unique merger of tailored variational image decomposition and enhanced Hilbert spiral transform, adaptively provides high quality map of sample-induced phase delay, accepting particularly wide range of input single-shot interferograms (from off-axis to quasi on-axis configurations). It especially promotes high space-bandwidth-product QPI configurations alleviating the spectral overlapping problem. The VHQPI is tailored to deal with cumbersome interference patterns related to detailed locally varying biological objects with possibly high dynamic range of phase and relatively low carrier. In post-processing, the slowly varying phase-term associated with the instrumental optical aberrations is eliminated upon variational analysis to further boost the phase-imaging capabilities. The VHQPI is thoroughly studied employing numerical simulations and successfully validated using static and dynamic cells phase-analysis. It compares favorably with other single-shot phase reconstruction techniques based on the Fourier and Hilbert-Huang transforms, both in terms of visual inspection and quantitative evaluation, potentially opening up new possibilities in QPI.
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Affiliation(s)
- Maciej Trusiak
- Institute of Micromechanics and Photonics, Warsaw University of Technology, 8 Sw. A. Boboli St., 02-525, Warsaw, Poland.
| | - Maria Cywińska
- Institute of Micromechanics and Photonics, Warsaw University of Technology, 8 Sw. A. Boboli St., 02-525, Warsaw, Poland.
| | - Vicente Micó
- Departamento de Óptica y de Optometría y Ciencias de la Visión, Facultad de Física, Universitat de Valencia, C/Doctor Moliner 50, 46100, Burjassot, Spain
| | - José Ángel Picazo-Bueno
- Departamento de Óptica y de Optometría y Ciencias de la Visión, Facultad de Física, Universitat de Valencia, C/Doctor Moliner 50, 46100, Burjassot, Spain
| | - Chao Zuo
- Jiangsu Key Laboratory of Spectral Imaging and Intelligence Sense, Nanjing University of Science and Technology, Nanjing, 210094, Jiangsu, China
| | - Piotr Zdańkowski
- Institute of Micromechanics and Photonics, Warsaw University of Technology, 8 Sw. A. Boboli St., 02-525, Warsaw, Poland
| | - Krzysztof Patorski
- Institute of Micromechanics and Photonics, Warsaw University of Technology, 8 Sw. A. Boboli St., 02-525, Warsaw, Poland
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Psota P, Tang H, Pooladvand K, Furlong C, Rosowski JJ, Cheng JT, Lédl V. Multiple angle digital holography for the shape measurement of the unpainted tympanic membrane. OPTICS EXPRESS 2020; 28:24614-24628. [PMID: 32907000 PMCID: PMC7470675 DOI: 10.1364/oe.398919] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Revised: 07/10/2020] [Accepted: 07/10/2020] [Indexed: 06/11/2023]
Abstract
The shape of the tympanic membrane (TM) plays an important role in sound transmission through the ear for hearing. Previously we developed a high-speed holographic system employing a tunable wavelength laser for rapid TM shape measurement. However, the tunable laser illumination was not sufficient to measure the shape of the unpainted TM due to the semi-transparency of the TM and short exposure time of the camera. This paper presents a new multiple angle illumination technique that allows us to use a higher power single wavelength laser to perform shape measurements on the unpainted TM. Accuracy of the new method is demonstrated by a measure of a step gauge provided by the National Institute of Standards and Technology. We successfully applied the new shape measurement method on a fresh postmortem human TM without any paint.
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Affiliation(s)
- Pavel Psota
- Faculty of Mechatronics, Informatics and Interdisciplinary Studies, Technical University of Liberec, Liberec 46117, Czech Republic
- TOPTEC, Institute of Plasma Physics of the Czech Academy of Sciences, Turnov 51101, Czech Republic
| | - Haimi Tang
- Center for Holographic Studies and Laser Micro-mechaTronics (CHSLT), Worcester, MA 01609, USA
- Mechanical Engineering Department, Worcester Polytechnic Institute, Worcester, MA 01609, USA
| | - Koohyar Pooladvand
- Center for Holographic Studies and Laser Micro-mechaTronics (CHSLT), Worcester, MA 01609, USA
- Mechanical Engineering Department, Worcester Polytechnic Institute, Worcester, MA 01609, USA
| | - Cosme Furlong
- Center for Holographic Studies and Laser Micro-mechaTronics (CHSLT), Worcester, MA 01609, USA
- Mechanical Engineering Department, Worcester Polytechnic Institute, Worcester, MA 01609, USA
- Eaton-Peabody Laboratory, Massachusetts Eye and Ear Infirmary, Boston, MA 02114, USA
- Department of Otolaryngology-Head and Neck Surgery, Harvard Medical School, Boston, MA 02114, USA
| | - John J. Rosowski
- Eaton-Peabody Laboratory, Massachusetts Eye and Ear Infirmary, Boston, MA 02114, USA
- Department of Otolaryngology-Head and Neck Surgery, Harvard Medical School, Boston, MA 02114, USA
| | - Jeffrey T. Cheng
- Eaton-Peabody Laboratory, Massachusetts Eye and Ear Infirmary, Boston, MA 02114, USA
- Department of Otolaryngology-Head and Neck Surgery, Harvard Medical School, Boston, MA 02114, USA
| | - Vít Lédl
- TOPTEC, Institute of Plasma Physics of the Czech Academy of Sciences, Turnov 51101, Czech Republic
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15
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Fan S, Smith-Dryden S, Li G, Saleh B. Reconstructing complex refractive-index of multiply-scattering media by use of iterative optical diffraction tomography. OPTICS EXPRESS 2020; 28:6846-6858. [PMID: 32225923 DOI: 10.1364/oe.380309] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2019] [Accepted: 12/19/2019] [Indexed: 05/27/2023]
Abstract
Conventional optical diffraction tomography (ODT) techniques fail in the presence of multiple scattering, and the problem becomes even more challenging when the medium is also lossy. Iterative ODT (iODT), which was shown recently to be more tolerant to multiple scattering than conventional ODT, is here augmented with an error-subtraction (ES) module. Numerical results demonstrate the accuracy and efficiency of iODT with ES for reconstructing multiply-scattering objects with complex refractive index.
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16
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3D-printed biological cell phantom for testing 3D quantitative phase imaging systems. Sci Rep 2019; 9:18872. [PMID: 31827171 PMCID: PMC6906528 DOI: 10.1038/s41598-019-55330-4] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Accepted: 11/08/2019] [Indexed: 01/26/2023] Open
Abstract
As the 3D quantitative phase imaging (QPI) methods mature, their further development calls for reliable tools and methods to characterize and compare their metrological parameters. We use refractive index engineering during two-photon laser photolithography to fabricate a life-scale phantom of a biological cell with internal structures that mimic optical and structural properties of mammalian cells. After verification with a number of reference techniques, the phantom is used to characterize the performance of a limited-angle holographic tomography microscope.
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17
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Smolyanskaya OA, Lazareva EN, Nalegaev SS, Petrov NV, Zaytsev KI, Timoshina PA, Tuchina DK, Toropova YG, Kornyushin OV, Babenko AY, Guillet JP, Tuchin VV. Multimodal Optical Diagnostics of Glycated Biological Tissues. BIOCHEMISTRY (MOSCOW) 2019; 84:S124-S143. [PMID: 31213199 DOI: 10.1134/s0006297919140086] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Diabetes mellitus is a metabolic disorder characterized by chronic hyperglycemia accompanied by the disruption of carbohydrate, lipid, and proteins metabolism and development of long-term microvascular, macrovascular, and neuropathic changes. This review presents the results of spectroscopic studies on the glycation of tissues and cell proteins in organisms with naturally developing and model diabetes and in vitro glycated samples in a wide range of electromagnetic waves, from visible light to terahertz radiation. Experiments on the refractometric measurements of glycated and oxygenated hemoglobin in broad wavelength and temperature ranges using digital holographic microscopy and diffraction tomography are discussed, as well as possible application of these methods in the diabetes diagnostics. It is shown that the development and implementation of multimodal approaches based on a combination of phase diagnostics with other methods is another promising direction in the diabetes diagnostics. The possibilities of using optical clearing agents for monitoring the diffusion of substances in the glycated tissues and blood flow dynamics in the pancreas of animals with induced diabetes have also been analyzed.
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Affiliation(s)
| | - E N Lazareva
- Saratov State University, Saratov, 410012, Russia.,Tomsk State University, Tomsk, 634050, Russia
| | | | - N V Petrov
- ITMO University, St. Petersburg, 197101, Russia
| | - K I Zaytsev
- Prokhorov General Physics Institute, Russian Academy of Sciences, Moscow, 119991, Russia.,Institute of Regenerative Medicine, Sechenov First Moscow State Medical University, Moscow, 119991, Russia.,Bauman Moscow State Technical University, Moscow, 105005, Russia
| | - P A Timoshina
- Saratov State University, Saratov, 410012, Russia.,Tomsk State University, Tomsk, 634050, Russia
| | - D K Tuchina
- Saratov State University, Saratov, 410012, Russia.,Tomsk State University, Tomsk, 634050, Russia.,Prokhorov General Physics Institute, Russian Academy of Sciences, Moscow, 119991, Russia
| | - Ya G Toropova
- Almazov National Medical Research Centre, St. Petersburg, 197341, Russia
| | - O V Kornyushin
- Almazov National Medical Research Centre, St. Petersburg, 197341, Russia
| | - A Yu Babenko
- Almazov National Medical Research Centre, St. Petersburg, 197341, Russia
| | - J-P Guillet
- IMS Laboratory, University of Bordeaux, Talence, 33405, France
| | - V V Tuchin
- ITMO University, St. Petersburg, 197101, Russia.,Saratov State University, Saratov, 410012, Russia.,Tomsk State University, Tomsk, 634050, Russia.,Institute of Precision Mechanics and Control, Russian Academy of Sciences, Saratov, 410028, Russia
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18
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Zhikhoreva AA, Belashov AV, Bespalov VG, Semenov AL, Semenova IV, Tochilnikov GV, Zhilinskaya NT, Vasyutinskii OS. Morphological changes in the ovarian carcinoma cells of Wistar rats induced by chemotherapy with cisplatin and dioxadet. BIOMEDICAL OPTICS EXPRESS 2018; 9:5817-5827. [PMID: 30460164 PMCID: PMC6238906 DOI: 10.1364/boe.9.005817] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2018] [Revised: 10/19/2018] [Accepted: 10/19/2018] [Indexed: 06/09/2023]
Abstract
The development of new express methods for the analysis of the efficacy of anti-cancer therapy on the cellular level is highly desirable for the analysis of chemotherapeutic agent performance. In this paper we suggest the use of parameters of cell morphology determined by holographic microscopy and tomography for the effective label free quantitative analysis of cell viability under antitumor chemotherapy and thus of cytostatic agent efficacy. As shown, measured phase shifts and cell morphology change dramatically as a result of chemotherapy and depend strongly on the cell type and agent applied. Experimentally, a comparative analysis of the antitumor efficacy of the two cytostatics, cisplatin and dioxadet, that are commonly used for chemotherapy of disseminated ovarian carcinoma has been performed. The experiments were carried out on the Wistar rat model. An essential difference in the morphology of cells, both normal (erythrocytes) and cancerous, present in ascitic fluid taken from the non-treated group of rats and the groups treated with either dioxadet or cisplatin, has been observed. The results obtained can be interpreted as an indication of the antitumor performance of both cytostatics at the cellular level and as a demonstration of the higher efficacy of therapy with dioxadet as compared to that with cisplatin. Differences in cell morphology are suggested to be applied as quantitative markers of cell viability and cytostatic agent efficacy. The conclusions made are supported by a comparison with the results of recent experiments based on survival rates of laboratory animals treated with these agents..
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Affiliation(s)
- A. A. Zhikhoreva
- Ioffe Institute; 26 Polytekhnicheskaya, St.Petersburg, 194021,
Russia
| | - A. V. Belashov
- Ioffe Institute; 26 Polytekhnicheskaya, St.Petersburg, 194021,
Russia
| | - V. G. Bespalov
- ITMO University; Kronverkskiy pr., 49, St. Petersburg, 197101,
Russia
- N. N. Petrov National Medical Research Center of Oncology, 68, Leningradskaya ul., Pesochnyi, St. Petersburg, 197758,
Russia
| | - A. L. Semenov
- N. N. Petrov National Medical Research Center of Oncology, 68, Leningradskaya ul., Pesochnyi, St. Petersburg, 197758,
Russia
| | - I. V. Semenova
- Ioffe Institute; 26 Polytekhnicheskaya, St.Petersburg, 194021,
Russia
| | - G. V. Tochilnikov
- N. N. Petrov National Medical Research Center of Oncology, 68, Leningradskaya ul., Pesochnyi, St. Petersburg, 197758,
Russia
| | - N. T. Zhilinskaya
- N. N. Petrov National Medical Research Center of Oncology, 68, Leningradskaya ul., Pesochnyi, St. Petersburg, 197758,
Russia
- Peter the Great St.Petersburg Polytechnic University; 29, Polytekhnicheskaya, St. Petersburg, 195251,
Russia
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19
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Park C, Shin S, Park Y. Generalized quantification of three-dimensional resolution in optical diffraction tomography using the projection of maximal spatial bandwidths. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2018; 35:1891-1898. [PMID: 30461848 DOI: 10.1364/josaa.35.001891] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Optical diffraction tomography (ODT) is a three-dimensional (3D) quantitative phase imaging technique, which enables the reconstruction of the 3D refractive index (RI) distribution of a transparent sample. Due to its fast, non-invasive, and quantitative imaging capability, ODT has emerged as a powerful tool for various applications. However, the spatial resolution of ODT has only been quantified along the lateral and axial directions for limited conditions; it has not been investigated for arbitrary-oblique directions. In this paper, we systematically quantify the 3D spatial resolution of ODT by exploiting the spatial bandwidth of the reconstructed scattering potential. The 3D spatial resolution is calculated for various types of systems, including the illumination-scanning, sample-rotation, and hybrid scanning-rotation methods. In particular, using the calculated 3D spatial resolution, we provide the spatial resolution as well as the arbitrary sliced angle. Furthermore, to validate the present method, the point spread function of an ODT system is experimentally obtained using the deconvolution of a 3D RI distribution of a microsphere and is compared with the calculated resolution.
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20
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Kim YS, Lee S, Jung J, Shin S, Choi HG, Cha GH, Park W, Lee S, Park Y. Combining Three-Dimensional Quantitative Phase Imaging and Fluorescence Microscopy for the Study of Cell Pathophysiology. THE YALE JOURNAL OF BIOLOGY AND MEDICINE 2018; 91:267-277. [PMID: 30258314 PMCID: PMC6153632] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
Quantitative phase imaging (QPI) has emerged as one of the powerful imaging tools for the study of live cells in a non-invasive manner. In particular, multimodal approaches combining QPI and fluorescence microscopic techniques have been recently developed for superior spatiotemporal resolution as well as high molecular specificity. In this review, we briefly summarize recent advances in three-dimensional QPI combined with fluorescence techniques for the correlative study of cell pathophysiology. Through this review, biologists and clinicians can be provided with insights on this rapidly growing field of research and may find broader applications to investigate unrevealed nature in cell physiology and related diseases.
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Affiliation(s)
- Young Seo Kim
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea,Tomocube Inc., Daejeon, Republic of Korea,KAIST Institute of Health Science and Technology, KAIST, Daejeon, Republic of Korea
| | - SangYun Lee
- KAIST Institute of Health Science and Technology, KAIST, Daejeon, Republic of Korea,Department of Physics, KAIST, Daejeon, Republic of Korea
| | - JaeHwang Jung
- KAIST Institute of Health Science and Technology, KAIST, Daejeon, Republic of Korea,Department of Physics, KAIST, Daejeon, Republic of Korea
| | - Seungwoo Shin
- KAIST Institute of Health Science and Technology, KAIST, Daejeon, Republic of Korea,Department of Physics, KAIST, Daejeon, Republic of Korea
| | - He-Gwon Choi
- Department of Medical Science, Chungnam National University, Daejeon, Republic of Korea
| | - Guang-Ho Cha
- Department of Medical Science, Chungnam National University, Daejeon, Republic of Korea
| | - Weisun Park
- Tomocube Inc., Daejeon, Republic of Korea,KAIST Institute of Health Science and Technology, KAIST, Daejeon, Republic of Korea,Department of Physics, KAIST, Daejeon, Republic of Korea
| | - Sumin Lee
- Tomocube Inc., Daejeon, Republic of Korea
| | - YongKeun Park
- Tomocube Inc., Daejeon, Republic of Korea,KAIST Institute of Health Science and Technology, KAIST, Daejeon, Republic of Korea,Department of Physics, KAIST, Daejeon, Republic of Korea,To whom all correspondence should be addressed: YongKeun Park, Department of Physics, KAIST, Daejeon, Republic of Korea;
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21
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Krauze W, Kuś A, Śladowski D, Skrzypek E, Kujawińska M. Reconstruction method for extended depth-of-field optical diffraction tomography. Methods 2018; 136:40-49. [DOI: 10.1016/j.ymeth.2017.10.005] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2017] [Revised: 09/11/2017] [Accepted: 10/02/2017] [Indexed: 10/18/2022] Open
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22
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Kuś A. Illumination-related errors in limited-angle optical diffraction tomography. APPLIED OPTICS 2017; 56:9247-9256. [PMID: 29216097 DOI: 10.1364/ao.56.009247] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
In the paper, the design and tolerances of optical systems and scanning components used in limited-angle optical diffraction tomography are analyzed in order to improve the performance of the measurement systems and to encourage the application of tomography as a standard method for quantitative analysis of 3D refractive index distribution in biological microstructures. The first part of the presented analysis consists of component selection for the scanning device and optical system in the illumination part of the setup and the influence of the illumination wavefront on reconstruction quality. In the second part, the sensitivity of the tomographic reconstruction quality to three representative measurement-related errors based on synthetic data is demonstrated. Finally, a configuration of the system, selected to minimize reconstruction errors, is proposed and alignment tolerances simulated using the Monte Carlo method are provided.
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23
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Kostencka J, Kozacki T, Józwik M. Holographic tomography with object rotation and two-directional off-axis illumination. OPTICS EXPRESS 2017; 25:23920-23934. [PMID: 29041342 DOI: 10.1364/oe.25.023920] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2017] [Accepted: 08/29/2017] [Indexed: 05/20/2023]
Abstract
A hybrid system of holographic tomography, which utilizes rotation of a sample and two-directional, off-axis illumination is proposed. The applied type of illumination brings two major benefits. First, it offers theoretical potential for the resolution improvement with respect to conventional tomography. Second, it enables effective, numerical compensation of the defocus error, which is achieved with an accurate, noise-immune autofocusing. Hence, the main practical obstacle of hybrid tomography is removed and its high-resolution potential is put into practice. The utility of the proposed concept is experimentally demonstrated with the tomographic measurement of a photonic crystal fiber.
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24
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Ma X, Xiao W, Pan F. Optical tomographic reconstruction based on multi-slice wave propagation method. OPTICS EXPRESS 2017; 25:22595-22607. [PMID: 29041567 DOI: 10.1364/oe.25.022595] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2017] [Accepted: 09/02/2017] [Indexed: 06/07/2023]
Abstract
In optical tomography, it is challenging to obtain high-quality results for complex-structured objects which induce multiple scattering. Nonlinear reconstruction methods outperform linear ones in these situations. A promising nonlinear method is the approach based on beam propagation method, but its accuracy may decrease for complicated structures. In this paper, we describe a novel tomographic reconstruction method using multi-slice wave propagation method (WPM) as the forward model, which simulates the scattering process more precisely but has not been introduced in tomographic reconstruction before. The computational model of WPM is presented. To tackle the computational complexity, we propose an efficient scheme to compute the transmitted field and its derivative. We then use an iterative optimization method to recover the quantitative refraction index distribution. We also discuss the influences of the parameters in the method and how to determine their values. The experimental results demonstrate that this method can address multiple scattering problems and provide high accuracy for complex-structured objects.
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25
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Label-free high-resolution 3-D imaging of gold nanoparticles inside live cells using optical diffraction tomography. Methods 2017; 136:160-167. [PMID: 28723583 DOI: 10.1016/j.ymeth.2017.07.008] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2017] [Revised: 06/06/2017] [Accepted: 07/08/2017] [Indexed: 12/12/2022] Open
Abstract
Delivery of gold nanoparticles (GNPs) into live cells has high potentials, ranging from molecular-specific imaging, photodiagnostics, to photothermal therapy. However, studying the long-term dynamics of cells with GNPs using conventional fluorescence techniques suffers from phototoxicity and photobleaching. Here, we present a method for 3-D imaging of GNPs inside live cells exploiting refractive index (RI) as imaging contrast. Employing optical diffraction tomography, 3-D RI tomograms of live cells with GNPs are precisely measured for an extended period with sub-micrometer resolution. The locations and contents of GNPs in live cells are precisely addressed and quantified due to their distinctly high RI values, which was validated by confocal fluorescence imaging of fluorescent dye conjugated GNPs. In addition, we perform quantitative imaging analysis including the segmentations of GNPs in the cytosol, the volume distributions of aggregated GNPs, and the temporal evolution of GNPs contents in HeLa and 4T1 cells.
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