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Rodríguez C, Pan D, Natan RG, Mohr MA, Miao M, Chen X, Northen TR, Vogel JP, Ji N. Adaptive optical third-harmonic generation microscopy for in vivo imaging of tissues. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.02.592275. [PMID: 38746456 PMCID: PMC11092640 DOI: 10.1101/2024.05.02.592275] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2024]
Abstract
Third-harmonic generation microscopy is a powerful label-free nonlinear imaging technique, providing essential information about structural characteristics of cells and tissues without requiring external labelling agents. In this work, we integrated a recently developed compact adaptive optics module into a third-harmonic generation microscope, to measure and correct for optical aberrations in complex tissues. Taking advantage of the high sensitivity of the third-harmonic generation process to material interfaces and thin membranes, along with the 1,300-nm excitation wavelength used here, our adaptive optical third-harmonic generation microscope enabled high-resolution in vivo imaging within highly scattering biological model systems. Examples include imaging of myelinated axons and vascular structures within the mouse spinal cord and deep cortical layers of the mouse brain, along with imaging of key anatomical features in the roots of the model plant Brachypodium distachyon. In all instances, aberration correction led to significant enhancements in image quality.
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Affiliation(s)
- Cristina Rodríguez
- Department of Physics, University of California, Berkeley, CA, USA
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
- Present address: Department of Biomedical Engineering, Yale University, New Haven, CT, USA
| | - Daisong Pan
- Department of Physics, University of California, Berkeley, CA, USA
| | - Ryan G. Natan
- Department of Physics, University of California, Berkeley, CA, USA
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Manuel A. Mohr
- Department of Biology, Stanford University, Stanford, CA, USA
- Present address: Yale Ventures, Yale University, New Haven, CT, USA
| | - Max Miao
- Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
- Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Xiaoke Chen
- Department of Biology, Stanford University, Stanford, CA, USA
| | - Trent R. Northen
- Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
- Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - John P. Vogel
- Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
- Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Na Ji
- Department of Physics, University of California, Berkeley, CA, USA
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
- Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA
- Helen Wills Neuroscience Institute, University of California, Berkeley, CA, USA
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
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2
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Molina R, Redondo B, Ortiz C, Vera J, Díaz JA, Jiménez R. Higher order aberrations according to spherical, and astigmatic refractive errors in children. Clin Exp Optom 2024:1-12. [PMID: 38561016 DOI: 10.1080/08164622.2024.2325632] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Accepted: 02/04/2024] [Indexed: 04/04/2024] Open
Abstract
CLINICAL RELEVANCE The results of this study present novel insights into the impact of spherical and astigmatic refractive errors on overall, corneal and internal aberrations and may provide a clear understanding of the emmetropisation process and the development of visual function. BACKGROUND This study aimed to assess the association between overall, corneal and internal higher-order aberrations and the spherical and astigmatic components (magnitude and angle) of refractive error in a large sample of children. METHODS A total of 311 children aged 7 - 8 years old were classified based on spherical equivalent refraction (myopic, emmetropic and hyperopic); magnitude of astigmatism (none, low and moderate); and angle of astigmatism (with-the-rule, against-the-rule and oblique). Refractive error and overall, corneal and internal higher-order aberrations were measured using the OPD-Scan III workstation. RESULTS Regarding spherical equivalent refraction, myopic eyes had greater root mean square (RMS) overall higher-order values, total spherical, tetrafoil and secondary astigmatism aberrations, and internal higher-order, total spherical and tetrafoil aberrations in comparison to emmetropic eyes. The magnitude of astigmatism was positively associated with all overall RMS aberrations and with internal higher order, coma, total coma, total spherical and tetrafoil aberrations. Eyes with with-the-rule astigmatism showed higher RMS values of coma and total coma compared to eyes with against-the-rule and oblique astigmatism. CONCLUSIONS Higher-order aberrations are dependent on the spherical as well as astigmatic components of refractive error. These findings enhance the current understanding of the emmetropisation process and visual function development.
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Affiliation(s)
- Rubén Molina
- Department of Optics, University of Granada, Granada, Spain
| | - Beatriz Redondo
- Department of Optics, University of Granada, Granada, Spain
- New England College of Optometry, Boston, Massachusetts
| | - Carolina Ortiz
- Department of Optics, University of Granada, Granada, Spain
| | - Jesús Vera
- Department of Optics, University of Granada, Granada, Spain
- New England College of Optometry, Boston, Massachusetts
| | - José A Díaz
- Department of Optics, University of Granada, Granada, Spain
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3
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Gohma A, Adachi N, Yonemaru Y, Horiba D, Higuchi K, Nishiwaki D, Yokoi E, Ue Y, Miyawaki A, Monai H. Spatial frequency-based correction of the spherical aberration in living brain imaging. Microscopy (Oxf) 2024; 73:37-46. [PMID: 37315186 PMCID: PMC10849036 DOI: 10.1093/jmicro/dfad035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2023] [Revised: 05/30/2023] [Accepted: 06/12/2023] [Indexed: 06/16/2023] Open
Abstract
Optical errors, including spherical aberrations, hinder high-resolution imaging of biological samples due to biochemical components and physical properties. We developed the Deep-C microscope system to achieve aberration-free images, employing a motorized correction collar and contrast-based calculations. However, current contrast-maximization techniques, such as the Brenner gradient method, inadequately assess specific frequency bands. The Peak-C method addresses this issue, but its arbitrary neighbor selection and susceptibility to the noise limit its effectiveness. In this paper, we emphasize the importance of a broad spatial frequency range for accurate spherical aberration correction and propose Peak-F. This spatial frequency-based system utilizes a fast Fourier transform as a bandpass filter. This approach overcomes Peak-C's limitations and comprehensively covers the low-frequency domain of image spatial frequencies.
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Affiliation(s)
- Aoi Gohma
- Department of Biological Sciences, Graduate School of Humanities and Sciences, Ochanomizu University, Ohtsuka, Bunkyo-ku, Tokyo 112-8610, Japan
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
| | - Naoya Adachi
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
| | - Yasuo Yonemaru
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
| | - Daiki Horiba
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
| | - Kaori Higuchi
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
| | - Daisuke Nishiwaki
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
| | - Eiji Yokoi
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
| | - Yoshihiro Ue
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
| | - Atsushi Miyawaki
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
| | - Hiromu Monai
- Department of Biological Sciences, Graduate School of Humanities and Sciences, Ochanomizu University, Ohtsuka, Bunkyo-ku, Tokyo 112-8610, Japan
- RIKEN Center for Brain Science-Evident Open Collaboration Center, Center for Brain Science (CBS), RIKEN, 2-1, Hirosawa, Wako-shi, Saitama 351-0106, Japan
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4
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Lees RM, Bianco IH, Campbell RAA, Orlova N, Peterka DS, Pichler B, Smith SL, Yatsenko D, Yu CH, Packer AM. Standardised Measurements for Monitoring and Comparing Multiphoton Microscope Systems. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.01.23.576417. [PMID: 38328224 PMCID: PMC10849699 DOI: 10.1101/2024.01.23.576417] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/09/2024]
Abstract
The goal of this protocol is to enable better characterisation of multiphoton microscopy hardware across a large user base. The scope of this protocol is purposefully limited to focus on hardware, touching on software and data analysis routines only where relevant. The intended audiences are scientists using and building multiphoton microscopes in their laboratories. The goal is that any scientist, not only those with optical expertise, can test whether their multiphoton microscope is performing well and producing consistent data over the lifetime of their system.
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Affiliation(s)
- Robert M Lees
- Science and Technology Facilities Council, Octopus imaging facility, Research Complex at Harwell, Harwell Campus, Oxfordshire, UK
| | - Isaac H Bianco
- Department of Neuroscience, Physiology & Pharmacology, University College London, UK
| | | | | | - Darcy S Peterka
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10027, USA
| | - Bruno Pichler
- Independent NeuroScience Services INSS Ltd, Lewes, East Sussex, UK
| | - Spencer LaVere Smith
- Department of Electrical and Computer Engineering, University of California Santa Barbara, USA
| | | | - Che-Hang Yu
- Department of Electrical and Computer Engineering, University of California Santa Barbara, USA
| | - Adam M Packer
- Department of Physiology, Anatomy, and Genetics, University of Oxford, Oxford, UK
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5
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Mohanan S, Corbett AD. Understanding the limits of remote focusing. OPTICS EXPRESS 2023; 31:16281-16294. [PMID: 37157710 DOI: 10.1364/oe.485635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
It has previously been demonstrated in both simulation and experiment that well aligned remote focusing microscopes exhibit residual spherical aberration outside the focal plane. In this work, compensation of the residual spherical aberration is provided by the correction collar on the primary objective, controlled by a high precision stepper motor. A Shack-Hartmann wave front sensor is used to demonstrate the magnitude of the spherical aberration generated by the correction collar matches that predicted by an optical model of the objective lens. The limited impact of spherical aberration compensation on the diffraction limited range of the remote focusing system is described through a consideration of both on-axis and off-axis comatic and astigmatic aberrations, which are an inherent feature of remote focusing microscopes.
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6
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Matsumoto N, Watanabe K, Konno A, Inoue T, Okazaki S. Complex-Amplitude-Modulation Vectorial Excitation Beam for High-Resolution Observation of Deep Regions in Two-Photon Microscopy. Front Neurosci 2022; 16:880178. [PMID: 35516810 PMCID: PMC9063408 DOI: 10.3389/fnins.2022.880178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 03/28/2022] [Indexed: 11/13/2022] Open
Abstract
In two-photon microscopy, aberration correction is an essential technique for realizing high resolution in deep regions. A spatial light modulator (SLM) incorporated into an optical system for two-photon microscopy performs pre-compensation on the wavefront of the excitation beam, restoring the resolution close to the diffraction limit even in the deep region of a biological sample. If a spatial resolution smaller than the diffraction limit can be achieved along with aberration correction, the importance of two-photon microscopy for deep region observation will increase further. In this study, we realize higher resolution observations in the deep region by combining two resolution-enhancement methods and an aberration correction method. Therefore, a z-polarizer is added to the aberration-correction optical system, and the SLM modulates the amplitude and phase of the excitation beam; in other words, complex-amplitude modulation is performed. The lateral resolution is found to be approximately 20% higher than the diffraction limit obtained using a circularly polarized beam. Verification was conducted by simulation and experimentation using model samples and ex vivo biological samples. The proposed method has the potential to be effective for live imaging and photostimulation of the deep region of the sample, although it requires only minor changes to the conventional optical system that performs aberration correction.
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Affiliation(s)
- Naoya Matsumoto
- Central Research Laboratory, Hamamatsu Photonics K.K., Hamamatsu, Japan
| | - Koyo Watanabe
- Central Research Laboratory, Hamamatsu Photonics K.K., Hamamatsu, Japan
| | - Alu Konno
- Hamamatsu BioPhotonics Innovation Chair, Institute for Medical Photonics Research, Preeminent Medical Photonics Education and Research Center, Hamamatsu University School of Medicine, Hamamatsu, Japan
- Department of Virology and Parasitology, Hamamatsu University School of Medicine, Hamamatsu, Japan
| | - Takashi Inoue
- Central Research Laboratory, Hamamatsu Photonics K.K., Hamamatsu, Japan
| | - Shigetoshi Okazaki
- Hamamatsu BioPhotonics Innovation Chair, Institute for Medical Photonics Research, Preeminent Medical Photonics Education and Research Center, Hamamatsu University School of Medicine, Hamamatsu, Japan
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7
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Schmidt CC, Turcotte R, Booth MJ, Emptage NJ. Repeated imaging through a multimode optical fiber using adaptive optics. BIOMEDICAL OPTICS EXPRESS 2022; 13:662-675. [PMID: 35284159 PMCID: PMC8884233 DOI: 10.1364/boe.448277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/10/2021] [Revised: 12/20/2021] [Accepted: 12/21/2021] [Indexed: 06/14/2023]
Abstract
Multimode optical fibers (MMF) have shown considerable potential for minimally invasive diffraction-limited fluorescence imaging of deep brain regions owing to their small size. They also look to be suitable for imaging across long time periods, with repeated measurements performed within the same brain region, which is useful to assess the role of synapses in normal brain function and neurological disease. However, the approach is not without challenge. Prior to imaging, light propagation through a MMF must be characterized in a calibration procedure. Manual repositioning, as required for repeated imaging, renders this calibration invalid. In this study, we provide a two-step solution to the problem consisting of (1) a custom headplate enabling precise reinsertion of the MMF implant achieving low-quality focusing and (2) sensorless adaptive optics to correct translational shifts in the MMF position enabling generation of high-quality imaging foci. We show that this approach achieves fluorescence imaging after repeated removal and reinsertion of a MMF.
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Affiliation(s)
- Carla C. Schmidt
- Department of Pharmacology, University of Oxford, Mansfield Road, Oxford OX1 3QT, United Kingdom
- These authors contributed equally
| | - Raphaël Turcotte
- Tech4Health Institute, NYU Langone Health, New York, NY 10010, USA
- These authors contributed equally
| | - Martin J. Booth
- Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, United Kingdom
| | - Nigel J. Emptage
- Department of Pharmacology, University of Oxford, Mansfield Road, Oxford OX1 3QT, United Kingdom
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8
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Roy A, Zhang W, Jahed Z, Tsai CT, Cui B, Moerner WE. Exploring Cell Surface-Nanopillar Interactions with 3D Super-Resolution Microscopy. ACS NANO 2022; 16:192-210. [PMID: 34582687 PMCID: PMC8830212 DOI: 10.1021/acsnano.1c05313] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Plasma membrane topography has been shown to strongly influence the behavior of many cellular processes such as clathrin-mediated endocytosis, actin rearrangements, and others. Recent studies have used three-dimensional (3D) nanostructures such as nanopillars to imprint well-defined membrane curvatures (the "nano-bio interface"). In these studies, proteins and their interactions were probed by two-dimensional fluorescence microscopy. However, the low resolution and limited axial detail of such methods are not optimal to determine the relative spatial position and distribution of proteins along a 100 nm-diameter object, which is below the optical diffraction limit. Here, we introduce a general method to explore the nanoscale distribution of proteins at the nano-bio interface with 10-20 nm precision using 3D single-molecule super-resolution (SR) localization microscopy. This is achieved by combining a silicone-oil immersion objective and 3D double-helix point spread function microscopy. We carefully adjust the objective to minimize spherical aberrations between quartz nanopillars and the cell. To validate the 3D SR method, we imaged the 3D shape of surface-labeled nanopillars and compared the results with electron microscopy measurements. Turning to transmembrane-anchored labels in cells, the high quality 3D SR reconstructions reveal the membrane tightly wrapping around the nanopillars. Interestingly, the cytoplasmic protein AP-2 involved in clathrin-mediated endocytosis accumulates along the nanopillar above a specific threshold of 1/R (the reciprocal of the radius) membrane curvature. Finally, we observe that AP-2 and actin preferentially accumulate at positive Gaussian curvature near the pillar caps. Our results establish a general method to investigate the nanoscale distribution of proteins at the nano-bio interface using 3D SR microscopy.
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9
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Chen W, Natan RG, Yang Y, Chou SW, Zhang Q, Isacoff EY, Ji N. In vivo volumetric imaging of calcium and glutamate activity at synapses with high spatiotemporal resolution. Nat Commun 2021; 12:6630. [PMID: 34785691 PMCID: PMC8595604 DOI: 10.1038/s41467-021-26965-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Accepted: 10/27/2021] [Indexed: 12/02/2022] Open
Abstract
Studying neuronal activity at synapses requires high spatiotemporal resolution. For high spatial resolution in vivo imaging at depth, adaptive optics (AO) is required to correct sample-induced aberrations. To improve temporal resolution, Bessel focus has been combined with two-photon fluorescence microscopy (2PFM) for fast volumetric imaging at subcellular lateral resolution. To achieve both high-spatial and high-temporal resolution at depth, we develop an efficient AO method that corrects the distorted wavefront of Bessel focus at the objective focal plane and recovers diffraction-limited imaging performance. Applying AO Bessel focus scanning 2PFM to volumetric imaging of zebrafish larval and mouse brains down to 500 µm depth, we demonstrate substantial improvements in the sensitivity and resolution of structural and functional measurements of synapses in vivo. This enables volumetric measurements of synaptic calcium and glutamate activity at high accuracy, including the simultaneous recording of glutamate activity of apical and basal dendritic spines in the mouse cortex.
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Affiliation(s)
- Wei Chen
- grid.47840.3f0000 0001 2181 7878Department of Physics, University of California, Berkeley, CA 97420 USA
| | - Ryan G. Natan
- grid.47840.3f0000 0001 2181 7878Department of Physics, University of California, Berkeley, CA 97420 USA
| | - Yuhan Yang
- grid.47840.3f0000 0001 2181 7878Department of Physics, University of California, Berkeley, CA 97420 USA
| | - Shih-Wei Chou
- grid.47840.3f0000 0001 2181 7878Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720 USA
| | - Qinrong Zhang
- grid.47840.3f0000 0001 2181 7878Department of Physics, University of California, Berkeley, CA 97420 USA
| | - Ehud Y. Isacoff
- grid.47840.3f0000 0001 2181 7878Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720 USA ,grid.47840.3f0000 0001 2181 7878Helen Wills Neuroscience Institute, University of California, Berkeley, CA 94720 USA ,grid.184769.50000 0001 2231 4551Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
| | - Na Ji
- Department of Physics, University of California, Berkeley, CA, 97420, USA. .,Department of Molecular and Cell Biology, University of California, Berkeley, CA, 94720, USA. .,Helen Wills Neuroscience Institute, University of California, Berkeley, CA, 94720, USA. .,Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
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10
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Rodríguez C, Chen A, Rivera JA, Mohr MA, Liang Y, Natan RG, Sun W, Milkie DE, Bifano TG, Chen X, Ji N. An adaptive optics module for deep tissue multiphoton imaging in vivo. Nat Methods 2021; 18:1259-1264. [PMID: 34608309 PMCID: PMC9090585 DOI: 10.1038/s41592-021-01279-0] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Accepted: 08/23/2021] [Indexed: 02/08/2023]
Abstract
Understanding complex biological systems requires visualizing structures and processes deep within living organisms. We developed a compact adaptive optics module and incorporated it into two- and three-photon fluorescence microscopes, to measure and correct tissue-induced aberrations. We resolved synaptic structures in deep cortical and subcortical areas of the mouse brain, and demonstrated high-resolution imaging of neuronal structures and somatosensory-evoked calcium responses in the mouse spinal cord at great depths in vivo.
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Affiliation(s)
- Cristina Rodríguez
- Department of Physics, University of California, Berkeley, CA, USA.,Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.,These authors contributed equally to this work: Cristina Rodríguez, Anderson Chen
| | - Anderson Chen
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.,Present address: Bio Optical & Acoustic Spectroscopy Lab, Neurophotonics Center, Boston University, Boston, MA, USA.,These authors contributed equally to this work: Cristina Rodríguez, Anderson Chen
| | - José A. Rivera
- Department of Physics, University of California, Berkeley, CA, USA
| | - Manuel A. Mohr
- Department of Biology, Stanford University, Stanford, CA, USA
| | - Yajie Liang
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.,Present address: Department of Diagnostic Radiology and Nuclear Medicine, University of Maryland School of Medicine, Baltimore, MD, USA
| | - Ryan G. Natan
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.,Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA
| | - Wenzhi Sun
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.,Present address: School of Basic Medical Sciences, Capital Medical University, Beijing, China,Present address: Chinese Institute for Brain Research, Beijing, China
| | - Daniel E. Milkie
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Thomas G. Bifano
- Department of Mechanical Engineering, Photonics Center, Boston University, Boston, MA, USA.,Present address: Bio Optical & Acoustic Spectroscopy Lab, Neurophotonics Center, Boston University, Boston, MA, USA
| | - Xiaoke Chen
- Department of Biology, Stanford University, Stanford, CA, USA
| | - Na Ji
- Department of Physics, University of California, Berkeley, CA, USA.,Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.,Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA.,Helen Wills Neuroscience Institute, University of California, Berkeley, CA, USA.,Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.,Corresponding author:
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11
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Streich L, Boffi JC, Wang L, Alhalaseh K, Barbieri M, Rehm R, Deivasigamani S, Gross CT, Agarwal A, Prevedel R. High-resolution structural and functional deep brain imaging using adaptive optics three-photon microscopy. Nat Methods 2021; 18:1253-1258. [PMID: 34594033 PMCID: PMC8490155 DOI: 10.1038/s41592-021-01257-6] [Citation(s) in RCA: 55] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2021] [Accepted: 07/30/2021] [Indexed: 02/08/2023]
Abstract
Multiphoton microscopy has become a powerful tool with which to visualize the morphology and function of neural cells and circuits in the intact mammalian brain. However, tissue scattering, optical aberrations and motion artifacts degrade the imaging performance at depth. Here we describe a minimally invasive intravital imaging methodology based on three-photon excitation, indirect adaptive optics (AO) and active electrocardiogram gating to advance deep-tissue imaging. Our modal-based, sensorless AO approach is robust to low signal-to-noise ratios as commonly encountered in deep scattering tissues such as the mouse brain, and permits AO correction over large axial fields of view. We demonstrate near-diffraction-limited imaging of deep cortical spines and (sub)cortical dendrites up to a depth of 1.4 mm (the edge of the mouse CA1 hippocampus). In addition, we show applications to deep-layer calcium imaging of astrocytes, including fibrous astrocytes that reside in the highly scattering corpus callosum.
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Affiliation(s)
- Lina Streich
- Cell Biology and Biophysics Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
- Collaboration for joint PhD degree between EMBL and Heidelberg University, Faculty of Biosciences, Heidelberg University, Heidelberg, Germany
| | - Juan Carlos Boffi
- Cell Biology and Biophysics Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
| | - Ling Wang
- Cell Biology and Biophysics Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
| | - Khaleel Alhalaseh
- The Chica and Heinz Schaller Research Group, Institute for Anatomy and Cell Biology, Heidelberg University, Heidelberg, Germany
| | - Matteo Barbieri
- Cell Biology and Biophysics Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
| | - Ronja Rehm
- Cell Biology and Biophysics Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
| | | | - Cornelius T Gross
- Epigenetics and Neurobiology Unit, European Molecular Biology Laboratory, Monterotondo, Italy
| | - Amit Agarwal
- The Chica and Heinz Schaller Research Group, Institute for Anatomy and Cell Biology, Heidelberg University, Heidelberg, Germany
- Interdisciplinary Center for Neurosciences, Heidelberg University, Heidelberg, Germany
| | - Robert Prevedel
- Cell Biology and Biophysics Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.
- Epigenetics and Neurobiology Unit, European Molecular Biology Laboratory, Monterotondo, Italy.
- Interdisciplinary Center for Neurosciences, Heidelberg University, Heidelberg, Germany.
- Developmental Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
- Molecular Medicine Partnership Unit (MMPU), European Molecular Biology Laboratory, Heidelberg, Germany.
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12
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Velasco MGM, Zhang M, Antonello J, Yuan P, Allgeyer ES, May D, M’Saad O, Kidd P, Barentine AES, Greco V, Grutzendler J, Booth MJ, Bewersdorf J. 3D super-resolution deep-tissue imaging in living mice. OPTICA 2021; 8:442-450. [PMID: 34239948 PMCID: PMC8243577 DOI: 10.1364/optica.416841] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2020] [Revised: 02/23/2021] [Accepted: 02/23/2021] [Indexed: 05/08/2023]
Abstract
Stimulated emission depletion (STED) microscopy enables the three-dimensional (3D) visualization of dynamic nanoscale structures in living cells, offering unique insights into their organization. However, 3D-STED imaging deep inside biological tissue is obstructed by optical aberrations and light scattering. We present a STED system that overcomes these challenges. Through the combination of two-photon excitation, adaptive optics, red-emitting organic dyes, and a long-working-distance water-immersion objective lens, our system achieves aberration-corrected 3D super-resolution imaging, which we demonstrate 164 µm deep in fixed mouse brain tissue and 76 µm deep in the brain of a living mouse.
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Affiliation(s)
- Mary Grace M. Velasco
- Department of Biomedical Engineering, Yale School of Engineering & Applied Science, New Haven, Connecticut 06520, USA
- Department of Cell Biology, Yale School of Medicine, New Haven, Connecticut 06520, USA
| | - Mengyang Zhang
- Interdepartmental Neuroscience Program, Yale School of Medicine, New Haven, Connecticut 06520, USA
- Department of Neuroscience, Yale School of Medicine, New Haven, Connecticut 06520, USA
| | - Jacopo Antonello
- Department of Engineering Science, University of Oxford, Oxford OX1 3PJ, UK
| | - Peng Yuan
- Department of Neuroscience, Yale School of Medicine, New Haven, Connecticut 06520, USA
- Department of Neurology, Yale School of Medicine, New Haven, Connecticut 06520, USA
- Current Address: Department of Biology, Stanford University, Stanford, California 94304, USA
| | - Edward S. Allgeyer
- Department of Cell Biology, Yale School of Medicine, New Haven, Connecticut 06520, USA
- Current Address: The Gurdon Institute, University of Cambridge, Cambridge CB21QN, UK
| | - Dennis May
- Department of Genetics, Yale School of Medicine, New Haven, Connecticut 06520, USA
| | - Ons M’Saad
- Department of Biomedical Engineering, Yale School of Engineering & Applied Science, New Haven, Connecticut 06520, USA
- Department of Cell Biology, Yale School of Medicine, New Haven, Connecticut 06520, USA
| | - Phylicia Kidd
- Department of Cell Biology, Yale School of Medicine, New Haven, Connecticut 06520, USA
| | - Andrew E. S. Barentine
- Department of Biomedical Engineering, Yale School of Engineering & Applied Science, New Haven, Connecticut 06520, USA
- Department of Cell Biology, Yale School of Medicine, New Haven, Connecticut 06520, USA
| | - Valentina Greco
- Department of Cell Biology, Yale School of Medicine, New Haven, Connecticut 06520, USA
- Department of Genetics, Yale School of Medicine, New Haven, Connecticut 06520, USA
- Department of Dermatology, Yale Stem Cell Center, Yale Cancer Center, Yale School of Medicine, New Haven, Connecticut 06520, USA
| | - Jaime Grutzendler
- Interdepartmental Neuroscience Program, Yale School of Medicine, New Haven, Connecticut 06520, USA
- Department of Neuroscience, Yale School of Medicine, New Haven, Connecticut 06520, USA
- Department of Neurology, Yale School of Medicine, New Haven, Connecticut 06520, USA
| | - Martin J. Booth
- Department of Engineering Science, University of Oxford, Oxford OX1 3PJ, UK
| | - Joerg Bewersdorf
- Department of Biomedical Engineering, Yale School of Engineering & Applied Science, New Haven, Connecticut 06520, USA
- Department of Cell Biology, Yale School of Medicine, New Haven, Connecticut 06520, USA
- Corresponding author:
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13
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Ishida K, Naruse K, Mizouchi Y, Ogawa Y, Matsushita M, Shimi T, Kimura H, Fujiyoshi S. Variable immersion microscopy with a high numerical aperture. OPTICS LETTERS 2021; 46:856-859. [PMID: 33577531 DOI: 10.1364/ol.416006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Accepted: 01/09/2021] [Indexed: 06/12/2023]
Abstract
Three-dimensional (3D) optical microscopy with a high numerical aperture (NA) remains challenging for thick biological specimens owing to aberrations arising from interface refractions. We developed a variable immersion lens (VIL) to passively minimize these aberrations. A VIL is a high-NA concentric meniscus lens and was used in combination with an aberration-corrected high-NA reflecting objective (TORA-FUJI mirror). Wave-optics simulation at a wavelength of 488 nm showed that a VIL microscope enables diffraction-limited 1.2-NA imaging in water (refractive index of 1.34) at a depth of 0.3 mm by minimizing aberrations due to refraction of a sample interface. Another aberration due to the refractive index mismatching between a mounting medium, and an object can also be corrected by the VIL system, because various fluids with different refractive indices can be used as mounting media for the VIL. As a result of correcting the two aberrations at the same time, we experimentally demonstrated that a 6 µm diameter fluorescent bead can be imaged to the true dimensions in 3D.
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14
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Yamaguchi K, Otomo K, Kozawa Y, Tsutsumi M, Inose T, Hirai K, Sato S, Nemoto T, Uji-i H. Adaptive Optical Two-Photon Microscopy for Surface-Profiled Living Biological Specimens. ACS OMEGA 2021; 6:438-447. [PMID: 33458495 PMCID: PMC7807736 DOI: 10.1021/acsomega.0c04888] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2020] [Accepted: 11/05/2020] [Indexed: 05/08/2023]
Abstract
We developed adaptive optical (AO) two-photon excitation microscopy by introducing a spatial light modulator (SLM) in a commercially available microscopy system. For correcting optical aberrations caused by refractive index (RI) interfaces at a specimen's surface, spatial phase distributions of the incident excitation laser light were calculated using 3D coordination of the RI interface with a 3D ray-tracing method. Based on the calculation, we applied a 2D phase-shift distribution to a SLM and achieved the proper point spread function. AO two-photon microscopy improved the fluorescence image contrast in optical phantom mimicking biological specimens. Furthermore, it enhanced the fluorescence intensity from tubulin-labeling dyes in living multicellular tumor spheroids and allowed successful visualization of dendritic spines in the cortical layer V of living mouse brains in the secondary motor region with a curved surface. The AO approach is useful for observing dynamic physiological activities in deep regions of various living biological specimens with curved surfaces.
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Affiliation(s)
- Kazushi Yamaguchi
- Graduate
School of Information Science and Technology, Hokkaido University, 060-0814 Sapporo, Hokkaido, Japan
- Research
Institute for Electronic Science, Hokkaido
University, 060-0814 Sapporo, Hokkaido, Japan
- Division
of Biophotonics, National Institute for Physiological Sciences, National Institutes of Natural Sciences, 444-8787 Okazaki, Aichi, Japan
| | - Kohei Otomo
- Graduate
School of Information Science and Technology, Hokkaido University, 060-0814 Sapporo, Hokkaido, Japan
- Research
Institute for Electronic Science, Hokkaido
University, 060-0814 Sapporo, Hokkaido, Japan
- Division
of Biophotonics, National Institute for Physiological Sciences, National Institutes of Natural Sciences, 444-8787 Okazaki, Aichi, Japan
- Exploratory
Research Center on Life and Living Systems, National Institutes of Natural Sciences, 444-8787 Okazaki, Aichi, Japan
- Department
of Physiological Sciences, The Graduate
School for Advanced Study, 240-0193 Hayama, Kanagawa, Japan
| | - Yuichi Kozawa
- Institute
of Multidisciplinary Research for Advanced Materials, Tohoku University, 980-8577 Sendai, Miyagi, Japan
| | - Motosuke Tsutsumi
- Research
Institute for Electronic Science, Hokkaido
University, 060-0814 Sapporo, Hokkaido, Japan
- Division
of Biophotonics, National Institute for Physiological Sciences, National Institutes of Natural Sciences, 444-8787 Okazaki, Aichi, Japan
- Exploratory
Research Center on Life and Living Systems, National Institutes of Natural Sciences, 444-8787 Okazaki, Aichi, Japan
| | - Tomoko Inose
- Graduate
School of Information Science and Technology, Hokkaido University, 060-0814 Sapporo, Hokkaido, Japan
- Research
Institute for Electronic Science, Hokkaido
University, 060-0814 Sapporo, Hokkaido, Japan
| | - Kenji Hirai
- Graduate
School of Information Science and Technology, Hokkaido University, 060-0814 Sapporo, Hokkaido, Japan
- Research
Institute for Electronic Science, Hokkaido
University, 001-0020 Sapporo, Hokkaido, Japan
| | - Shunichi Sato
- Institute
of Multidisciplinary Research for Advanced Materials, Tohoku University, 980-8577 Sendai, Miyagi, Japan
| | - Tomomi Nemoto
- Graduate
School of Information Science and Technology, Hokkaido University, 060-0814 Sapporo, Hokkaido, Japan
- Research
Institute for Electronic Science, Hokkaido
University, 060-0814 Sapporo, Hokkaido, Japan
- Division
of Biophotonics, National Institute for Physiological Sciences, National Institutes of Natural Sciences, 444-8787 Okazaki, Aichi, Japan
- Exploratory
Research Center on Life and Living Systems, National Institutes of Natural Sciences, 444-8787 Okazaki, Aichi, Japan
- Department
of Physiological Sciences, The Graduate
School for Advanced Study, 240-0193 Hayama, Kanagawa, Japan
| | - Hiroshi Uji-i
- Graduate
School of Information Science and Technology, Hokkaido University, 060-0814 Sapporo, Hokkaido, Japan
- KU
Leuven, Department of Chemistry, Celestijinenlaan 200F, 3001 Heverlee, Leuven, Belgium
- Research
Institute for Electronic Science, Hokkaido
University, 001-0020 Sapporo, Hokkaido, Japan
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15
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Abstract
Adaptive optics (AO) is a technique that corrects for optical aberrations. It was originally proposed to correct for the blurring effect of atmospheric turbulence on images in ground-based telescopes and was instrumental in the work that resulted in the Nobel prize-winning discovery of a supermassive compact object at the centre of our galaxy. When AO is used to correct for the eye's imperfect optics, retinal changes at the cellular level can be detected, allowing us to study the operation of the visual system and to assess ocular health in the microscopic domain. By correcting for sample-induced blur in microscopy, AO has pushed the boundaries of imaging in thick tissue specimens, such as when observing neuronal processes in the brain. In this primer, we focus on the application of AO for high-resolution imaging in astronomy, vision science and microscopy. We begin with an overview of the general principles of AO and its main components, which include methods to measure the aberrations, devices for aberration correction, and how these components are linked in operation. We present results and applications from each field along with reproducibility considerations and limitations. Finally, we discuss future directions.
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16
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Kontenis G, Gailevičius D, Jonušauskas L, Purlys V. Dynamic aberration correction via spatial light modulator (SLM) for femtosecond direct laser writing: towards spherical voxels. OPTICS EXPRESS 2020; 28:27850-27864. [PMID: 32988069 DOI: 10.1364/oe.397006] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Accepted: 07/13/2020] [Indexed: 06/11/2023]
Abstract
Optical aberrations are a type of optical defect of imaging systems that hinder femtosecond direct laser write machining by changing voxel size and aspect ratio in different sample depths. We present an approach of compensating such aberrations using a liquid crystal spatial light modulator (SLM). Two methods for correcting are explored. They are based on backward ray tracing and Zernike polynomials. Experiments with a long focal distance lens (F = 25 and 50 mm) and microscope objective (100x, 0.9 NA) have been conducted. Specifically, aberration-free structuring with voxels of a constant aspect ratio of 1-1.5 is carried out throughout a 1 mm thick sample. Results show potential in simplifying direct laser writing and enabling new architectures made possible by near-spherical voxels.
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17
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Cui J, Turcotte R, Hampson KM, Wincott M, Schmidt CC, Emptage NJ, Charalampaki P, Booth MJ. Compact and contactless reflectance confocal microscope for neurosurgery. BIOMEDICAL OPTICS EXPRESS 2020; 11:4772-4785. [PMID: 32923077 PMCID: PMC7449734 DOI: 10.1364/boe.397832] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2020] [Revised: 06/19/2020] [Accepted: 06/22/2020] [Indexed: 05/08/2023]
Abstract
Visual guidance at the cellular level during neurosurgical procedures is essential for complete tumour resection. We present a compact reflectance confocal microscope with a 20 mm working distance that provided <1.2 µm spatial resolution over a 600 µm × 600 µm field of view in the near-infrared region. A physical footprint of 200 mm × 550 mm was achieved using only standard off-the-shelf components. Theoretical performance of the optical design was first evaluated via commercial Zemax software. Then three specimens from rodents: fixed brain, frozen calvaria and live hippocampal slices, were used to experimentally assess system capability and robustness. Results show great potential for the proposed system to be translated into use as a next generation label-free and contactless neurosurgical microscope.
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Affiliation(s)
- Jiahe Cui
- Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, United Kingdom
| | - Raphaël Turcotte
- Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, United Kingdom
- Department of Pharmacology, University of Oxford, Mansfield Road, Oxford OX1 3QT, United Kingdom
| | - Karen M. Hampson
- Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, United Kingdom
| | - Matthew Wincott
- Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, United Kingdom
| | - Carla C. Schmidt
- Department of Pharmacology, University of Oxford, Mansfield Road, Oxford OX1 3QT, United Kingdom
| | - Nigel J. Emptage
- Department of Pharmacology, University of Oxford, Mansfield Road, Oxford OX1 3QT, United Kingdom
| | - Patra Charalampaki
- Department of Neurosurgery, Cologne Medical Center, University Witten-Herdecke, Witten 58455, Germany
| | - Martin J. Booth
- Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, United Kingdom
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18
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Barbotin A, Urbančič I, Galiani S, Eggeling C, Booth M. Background Reduction in STED-FCS Using a Bivortex Phase Mask. ACS PHOTONICS 2020; 7:1742-1753. [PMID: 32685609 PMCID: PMC7366504 DOI: 10.1021/acsphotonics.0c00388] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Indexed: 05/04/2023]
Abstract
Fluorescence correlation spectroscopy (FCS) is a valuable tool to study the molecular dynamics in living cells. When used together with a super-resolution stimulated emission depletion (STED) microscope, STED-FCS can measure diffusion processes on the nanoscale in living cells. In two-dimensional (2D) systems like the cellular plasma membrane, a ring-shaped depletion focus is most commonly used to increase the lateral resolution, leading to more than 25-fold decrease in the observation volume, reaching the relevant scale of supramolecular arrangements. However, STED-FCS faces severe limitations when measuring diffusion in three dimensions (3D), largely due to the spurious background contributions from undepleted areas of the excitation focus that reduce the signal quality and ultimately limit the resolution. In this paper, we investigate how different STED confinement modes can mitigate this issue. By simulations as well as experiments with fluorescent probes in solution and in cells, we demonstrate that the coherent-hybrid (CH) depletion pattern created by a bivortex phase mask reduces background most efficiently and thus provides superior signal quality under comparable reduction of the observation volume. Featuring also the highest robustness to common optical aberrations, CH-STED can be considered the method of choice for reliable STED-FCS-based investigations of 3D diffusion on the subdiffraction scale.
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Affiliation(s)
- Aurélien Barbotin
- Department
of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, United
Kingdom
| | - Iztok Urbančič
- MRC
Human Immunology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, United Kingdom
- “Jožef
Stefan” Institute, Jamova cesta 39, SI-1000 Ljubljana, Slovenia
| | - Silvia Galiani
- MRC
Human Immunology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, United Kingdom
- Wolfson
Imaging Centre Oxford, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, United Kingdom
| | - Christian Eggeling
- MRC
Human Immunology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, United Kingdom
- Wolfson
Imaging Centre Oxford, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, United Kingdom
- Institute
of Applied Optics and Biophysics, Friedrich-Schiller-University
Jena, Max-Wien Platz
4, 07743 Jena, Germany
- Leibniz
Institute of Photonic Technology e.V., Albert-Einstein-Strasse 9, 07745 Jena, Germany
| | - Martin Booth
- Department
of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, United
Kingdom
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19
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Li Z, Zhang Q, Chou SW, Newman Z, Turcotte R, Natan R, Dai Q, Isacoff EY, Ji N. Fast widefield imaging of neuronal structure and function with optical sectioning in vivo. SCIENCE ADVANCES 2020; 6:eaaz3870. [PMID: 32494711 PMCID: PMC7209992 DOI: 10.1126/sciadv.aaz3870] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Accepted: 02/18/2020] [Indexed: 05/19/2023]
Abstract
Optical microscopy, owing to its noninvasiveness and subcellular resolution, enables in vivo visualization of neuronal structure and function in the physiological context. Optical-sectioning structured illumination microscopy (OS-SIM) is a widefield fluorescence imaging technique that uses structured illumination patterns to encode in-focus structures and optically sections 3D samples. However, its application to in vivo imaging has been limited. In this study, we optimized OS-SIM for in vivo neural imaging. We modified OS-SIM reconstruction algorithms to improve signal-to-noise ratio and correct motion-induced artifacts in live samples. Incorporating an adaptive optics (AO) module to OS-SIM, we found that correcting sample-induced optical aberrations was essential for achieving accurate structural and functional characterizations in vivo. With AO OS-SIM, we demonstrated fast, high-resolution in vivo imaging with optical sectioning for structural imaging of mouse cortical neurons and zebrafish larval motor neurons, and functional imaging of quantal synaptic transmission at Drosophila larval neuromuscular junctions.
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Affiliation(s)
- Ziwei Li
- Department of Physics, University of California, Berkeley, Berkeley, CA 94720, USA
- Department of Automation, Tsinghua University, Beijing 100084, China
| | - Qinrong Zhang
- Department of Physics, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Shih-Wei Chou
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Zachary Newman
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Raphaël Turcotte
- Department of Physics, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Ryan Natan
- Department of Physics, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Qionghai Dai
- Department of Automation, Tsinghua University, Beijing 100084, China
| | - Ehud Y. Isacoff
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA 94720, USA
- Bioscience Division, Lawrence Berkeley National Laboratory, Berkeley, Berkeley, CA 94720, USA
| | - Na Ji
- Department of Physics, University of California, Berkeley, Berkeley, CA 94720, USA
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA 94720, USA
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Corresponding author.
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20
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Advances in adaptive optics-based two-photon fluorescence microscopy for brain imaging. Lasers Med Sci 2019; 35:317-328. [PMID: 31729608 DOI: 10.1007/s10103-019-02908-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Accepted: 10/18/2019] [Indexed: 12/20/2022]
Abstract
Deep tissue imaging using two-photon fluorescence (TPF) techniques have revolutionized the optical imaging community by providing in depth molecular information at the single-cell level. These techniques provide structural and functional aspects of mammalian brain at unprecedented depth and resolution. However, wavefront distortions introduced by the optical system as well as the biological sample (tissue) limit the achievable fluorescence signal-to-noise ratio and resolution with penetration depth. In this review, we discuss on the advances in TPF microscopy techniques for in vivo functional imaging and offer guidelines as to which technologies are best suited for different imaging applications with special reference to adaptive optics.
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21
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Wei X, Wang Y, Cao Z, Mbemba D, Iqbal A, Wu Z. Large Aberration Correction by Magnetic Fluid Deformable Mirror with Model-Based Wavefront Sensorless Control Algorithm. Int J Mol Sci 2019; 20:E3697. [PMID: 31357727 PMCID: PMC6695980 DOI: 10.3390/ijms20153697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Revised: 07/23/2019] [Accepted: 07/24/2019] [Indexed: 11/16/2022] Open
Abstract
Magnetic fluid is a stable colloidal suspension of nano-sized, single-domain ferri/ferromagnetic particles dispersed in a liquid carrier. The liquid can be magnetized by the ferromagnetic particles aligned with the external magnetic field, which can be used as a wavefront corrector to correct the large aberrations up to more than 100 µm in adaptive optics (AO) systems. Since the measuring range of the wavefront sensor is normally small, the application of the magnetic fluid deformable mirror (MFDM) is limited with the WFS based AO system. In this paper, based on the MFDM model and the relationship between the second moment (SM) of the aberration gradients and the far-field intensity distribution, a model-based wavefront sensorless (WFSless) control algorithm is proposed for the MFDM. The correction performance of MFDM using the model-based control algorithm is evaluated in a WFSless AO system setup with a prototype MFDM, where a laser beam with unknown aberrations is supposed to produce a focused spot on the CCD. Experimental results show that the MFDM can be used to effectively compensate for unknown aberrations in the imaging system with the proposed model-based control algorithm.
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Affiliation(s)
- Xiang Wei
- Department of Precision Mechanical Engineering, Shanghai University, Shanghai 200444, China
| | - Yuanyuan Wang
- Department of Precision Mechanical Engineering, Shanghai University, Shanghai 200444, China
| | - Zhan Cao
- Department of Precision Mechanical Engineering, Shanghai University, Shanghai 200444, China
| | - Dziki Mbemba
- Department of Precision Mechanical Engineering, Shanghai University, Shanghai 200444, China
| | - Azhar Iqbal
- Dunlap Institute for Astronomy and Astrophysics, University of Toronto, Toronto, ON M5S 3H4, Canada
| | - Zhizheng Wu
- Department of Precision Mechanical Engineering, Shanghai University, Shanghai 200444, China.
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22
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Jia X, Zhou W, Huang F, Guo H, Hu J. Monitoring algorithm of tilt angle based on sub-block plane fitting for high-resolution imaging. APPLIED OPTICS 2019; 58:5873-5882. [PMID: 31503894 DOI: 10.1364/ao.58.005873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2019] [Accepted: 06/26/2019] [Indexed: 06/10/2023]
Abstract
The limitation of mechanical structure and misoperations can result in a small tilt angle formed by the sample and the focal plane, which will decrease the resolution of the imaging system. Moreover, the small tilt angle is difficult to be observed. In order to solve this problem, a monitoring algorithm of tilt angle based on sub-block plane fitting for high-resolution imaging systems has been proposed, which is used to measure the initial angle of most 2D samples before imaging and assist users to determine the tilt degree of the sample. Experiments demonstrate that the proposed method can measure the tilt angle with a high measurement precision of 0.007° and a low residual tilt angle of 0.004°, indicating that the algorithm has high measurement precision and stability. Further results show that the quality of the image will be improved by 20%-27% when the tilt angle is 0.3056°, which means that the small degree of tilt of the sample can seriously damage the image quality. Therefore, the study of tilt angle measurement has great significance for high-resolution imaging systems.
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23
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Turcotte R, Schmidt CC, Emptage NJ, Booth MJ. Focusing light in biological tissue through a multimode optical fiber: refractive index matching. OPTICS LETTERS 2019; 44:2386-2389. [PMID: 31090688 PMCID: PMC6706280 DOI: 10.1364/ol.44.002386] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Controlling light propagation through a step-index multimode optical fiber (MMF) has several important applications, including biological imaging. However, little consideration has been given to the coupling of fiber and tissue optics. In this Letter, we characterized the effects of tissue-induced light distortions, in particular those arising from a mismatch in the refractive index of the pre-imaging calibration and biological media. By performing the calibration in a medium matching the refractive index of the brain, optimal focusing ability was achieved, as well as a gain in focus uniformity within the field-of-view. These changes in illumination resulted in a 30% improvement in spatial resolution and intensity in fluorescence images of beads and live brain tissue. Beyond refractive index matching, our results demonstrate that sample-induced aberrations can severely deteriorate images from MMF-based systems.
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Affiliation(s)
- Raphaël Turcotte
- Department of Engineering Science, University of Oxford, Parks Road,
Oxford OX1 3PJ, United Kingdom
- Department of Pharmacology, University of Oxford, Mansfield Road,
Oxford OX1 3QT, United Kingdom
| | - Carla C. Schmidt
- Department of Pharmacology, University of Oxford, Mansfield Road,
Oxford OX1 3QT, United Kingdom
| | - Nigel J. Emptage
- Department of Pharmacology, University of Oxford, Mansfield Road,
Oxford OX1 3QT, United Kingdom
| | - Martin J. Booth
- Department of Engineering Science, University of Oxford, Parks Road,
Oxford OX1 3PJ, United Kingdom
- Corresponding author:
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24
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Turcotte R, Liang Y, Tanimoto M, Zhang Q, Li Z, Koyama M, Betzig E, Ji N. Dynamic super-resolution structured illumination imaging in the living brain. Proc Natl Acad Sci U S A 2019; 116:9586-9591. [PMID: 31028150 PMCID: PMC6511017 DOI: 10.1073/pnas.1819965116] [Citation(s) in RCA: 70] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Cells in the brain act as components of extended networks. Therefore, to understand neurobiological processes in a physiological context, it is essential to study them in vivo. Super-resolution microscopy has spatial resolution beyond the diffraction limit, thus promising to provide structural and functional insights that are not accessible with conventional microscopy. However, to apply it to in vivo brain imaging, we must address the challenges of 3D imaging in an optically heterogeneous tissue that is constantly in motion. We optimized image acquisition and reconstruction to combat sample motion and applied adaptive optics to correcting sample-induced optical aberrations in super-resolution structured illumination microscopy (SIM) in vivo. We imaged the brains of live zebrafish larvae and mice and observed the dynamics of dendrites and dendritic spines at nanoscale resolution.
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Affiliation(s)
- Raphaël Turcotte
- Howard Hughes Medical Institute, Janelia Research Campus, Ashburn, VA 20147
- Department of Physics, University of California, Berkeley, CA 94720
| | - Yajie Liang
- Howard Hughes Medical Institute, Janelia Research Campus, Ashburn, VA 20147
| | - Masashi Tanimoto
- Howard Hughes Medical Institute, Janelia Research Campus, Ashburn, VA 20147
| | - Qinrong Zhang
- Department of Physics, University of California, Berkeley, CA 94720
| | - Ziwei Li
- Department of Physics, University of California, Berkeley, CA 94720
| | - Minoru Koyama
- Howard Hughes Medical Institute, Janelia Research Campus, Ashburn, VA 20147
| | - Eric Betzig
- Howard Hughes Medical Institute, Janelia Research Campus, Ashburn, VA 20147;
- Department of Physics, University of California, Berkeley, CA 94720
- Department of Molecular & Cell Biology, University of California, Berkeley, CA 94720
- Helen Wills Neuroscience Institute, University of California, Berkeley, CA 94720
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720
| | - Na Ji
- Howard Hughes Medical Institute, Janelia Research Campus, Ashburn, VA 20147;
- Department of Physics, University of California, Berkeley, CA 94720
- Department of Molecular & Cell Biology, University of California, Berkeley, CA 94720
- Helen Wills Neuroscience Institute, University of California, Berkeley, CA 94720
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720
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25
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Zhuang Z, He C, Du Y, Wen W, Zhang G, Zhao Y, Tao M, Hu Z, Wang K, Qiu P. Refractive index and pulse broadening characterization using oil immersion and its influence on three-photon microscopy excited at the 1700-nm window. JOURNAL OF BIOPHOTONICS 2019; 12:e201800263. [PMID: 30239164 DOI: 10.1002/jbio.201800263] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2018] [Accepted: 09/12/2018] [Indexed: 06/08/2023]
Abstract
Three-photon microscopy excited at the 1700-nm window enables deep-tissue penetration. However, the refractive indices of commonly used immersion oils, and the resultant pulse broadening are not known, preventing imaging optimization. Here, we demonstrate detailed characterization of the refractive index, pulse broadening and distortion for excitation pulses at this window for commonly used immersion oils. On the physical side, we uncover that absorption, rather than material dispersion, is the main cause of pulse broadening and distortion. On the application side, comparative three-photon imaging results indicate that 1600-nm excitation yields 5 times higher three-photon signal than 1690-nm excitation.
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Affiliation(s)
- Ziwei Zhuang
- Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Optoelectronic Engineering, Shenzhen University, Shenzhen, China
| | - Chen He
- Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Optoelectronic Engineering, Shenzhen University, Shenzhen, China
| | - Yu Du
- Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Optoelectronic Engineering, Shenzhen University, Shenzhen, China
| | - Wenhui Wen
- Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Optoelectronic Engineering, Shenzhen University, Shenzhen, China
| | - Guoling Zhang
- Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Optoelectronic Engineering, Shenzhen University, Shenzhen, China
| | - Yaqian Zhao
- Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Optoelectronic Engineering, Shenzhen University, Shenzhen, China
| | - Ming Tao
- Shenzhen Key Laboratory of Marine Bioresource and Eco-Environmental Science, Guangdong Engineering Research Center for Marine Algal Biotechnology, College of Life Science and Oceanography, Shenzhen University, Shenzhen, China
| | - Zhangli Hu
- Shenzhen Key Laboratory of Marine Bioresource and Eco-Environmental Science, Guangdong Engineering Research Center for Marine Algal Biotechnology, College of Life Science and Oceanography, Shenzhen University, Shenzhen, China
| | - Ke Wang
- Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Optoelectronic Engineering, Shenzhen University, Shenzhen, China
| | - Ping Qiu
- College of Physics and Energy, Shenzhen University, Shenzhen, China
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26
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Büchau F, Patas A, Yang Y, Lindinger A, Heyne K. A stage-scanning two-photon microscope equipped with a temporal and a spatial pulse shaper: Enhance fluorescence signal by phase shaping. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2018; 89:123701. [PMID: 30599602 DOI: 10.1063/1.5025792] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2018] [Accepted: 11/12/2018] [Indexed: 06/09/2023]
Abstract
Here, we present a stage-scanning two-photon microscope (2PM) equipped with a temporal pulse shaper and a spatial light modulator enabling full control over spectral and spatial phases of the exciting laser pulse. We demonstrate the capability of correcting wavefronts and temporal pulse distortions without cross-dependencies induced by optical elements at the same time enhancing the fluorescence signal. We implemented phase resolved interferometric spectral modulation for temporal pulse shaping and the iterative feedback adaptive compensation technique for spatial pulse modulation as iterative techniques. Sample distortions were simulated by cover glass plates in the optical path and by chirping the exciting laser pulses. Optimization of the spectral and spatial phases results in a signal increase of 30% and nearly complete recovery of the losses. Applying a measured spatial compensation phase within a real leaf sample shows the enhancement in contrast due to wavefront shaping with local fluorescence increase up to 75%. The setup allows full independent control over spatial and spectral phases keeping or improving the spatial resolution of our microscope and provides the optimal tool for sensitive non-linear and coherent control microscopy.
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Affiliation(s)
- Frederik Büchau
- Department of Physics, Free University of Berlin, Arnimallee 14, D-14159 Berlin, Germany
| | - Alexander Patas
- Department of Physics, Free University of Berlin, Arnimallee 14, D-14159 Berlin, Germany
| | - Yang Yang
- Department of Physics, Free University of Berlin, Arnimallee 14, D-14159 Berlin, Germany
| | - Albrecht Lindinger
- Department of Physics, Free University of Berlin, Arnimallee 14, D-14159 Berlin, Germany
| | - Karsten Heyne
- Department of Physics, Free University of Berlin, Arnimallee 14, D-14159 Berlin, Germany
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27
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Galiñanes GL, Marchand PJ, Turcotte R, Pellat S, Ji N, Huber D. Optical alignment device for two-photon microscopy. BIOMEDICAL OPTICS EXPRESS 2018; 9:3624-3639. [PMID: 30338144 PMCID: PMC6191613 DOI: 10.1364/boe.9.003624] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2018] [Revised: 06/14/2018] [Accepted: 06/15/2018] [Indexed: 05/10/2023]
Abstract
Two-photon excitation fluorescence microscopy has revolutionized our understanding of brain structure and function through the high resolution and large penetration depth it offers. Investigating neural structures in vivo requires gaining optical access to the brain, which is typically achieved by replacing a part of the skull with one or several layers of cover glass windows. To compensate for the spherical aberrations caused by the presence of these layers of glass, collar-correction objectives are typically used. However, the efficiency of this correction has been shown to depend significantly on the tilt angle between the glass window surface and the optical axis of the imaging system. Here, we first expand these observations and characterize the effect of the tilt angle on the collected fluorescence signal with thicker windows (double cover slide) and compare these results with an objective devoid of collar-correction. Second, we present a simple optical alignment device designed to rapidly minimize the tilt angle in vivo and align the optical axis of the microscope perpendicularly to the glass window to an angle below 0.25°, thereby significantly improving the imaging quality. Finally, we describe a tilt-correction procedure for users in an in vivo setting, enabling the accurate alignment with a resolution of <0.2° in only few iterations.
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Affiliation(s)
- Gregorio L. Galiñanes
- Department of Basic Neurosciences, University of Geneva, Rue Michel Servet 1, 1206 Geneva,
Switzerland
| | - Paul J. Marchand
- Department of Basic Neurosciences, University of Geneva, Rue Michel Servet 1, 1206 Geneva,
Switzerland
| | - Raphaël Turcotte
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147,
USA
- Current address: Department of Pharmacology, University of Oxford, Mansfield Road, Oxford OX1 3QT,
UK
| | - Sebastien Pellat
- Department of Basic Neurosciences, University of Geneva, Rue Michel Servet 1, 1206 Geneva,
Switzerland
| | - Na Ji
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147,
USA
- Current address: Department of Physics, Department of Molecular & Cell Biology, Helen Wills Neuroscience Institute, University of California, Berkeley, CA 94720,
USA
| | - Daniel Huber
- Department of Basic Neurosciences, University of Geneva, Rue Michel Servet 1, 1206 Geneva,
Switzerland
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28
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Ue Y, Monai H, Higuchi K, Nishiwaki D, Tajima T, Okazaki K, Hama H, Hirase H, Miyawaki A. A spherical aberration-free microscopy system for live brain imaging. Biochem Biophys Res Commun 2018; 500:236-241. [PMID: 29649479 DOI: 10.1016/j.bbrc.2018.04.049] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2018] [Accepted: 04/07/2018] [Indexed: 11/15/2022]
Abstract
The high-resolution in vivo imaging of mouse brain for quantitative analysis of fine structures, such as dendritic spines, requires objectives with high numerical apertures (NAs) and long working distances (WDs). However, this imaging approach is often hampered by spherical aberration (SA) that results from the mismatch of refractive indices in the optical path and becomes more severe with increasing depth of target from the brain surface. Whereas a revolving objective correction collar has been designed to compensate SA, its adjustment requires manual operation and is inevitably accompanied by considerable focal shift, making it difficult to acquire the best image of a given fluorescent object. To solve the problems, we have created an objective-attached device and formulated a fast iterative algorithm for the realization of an automatic SA compensation system. The device coordinates the collar rotation and the Z-position of an objective, enabling correction collar adjustment while stably focusing on a target. The algorithm provides the best adjustment on the basis of the calculated contrast of acquired images. Together, they enable the system to compensate SA at a given depth. As proof of concept, we applied the SA compensation system to in vivo two-photon imaging with a 25 × water-immersion objective (NA, 1.05; WD, 2 mm). It effectively reduced SA regardless of location, allowing quantitative and reproducible analysis of fine structures of YFP-labeled neurons in the mouse cerebral cortical layers. Interestingly, although the cortical structure was optically heterogeneous along the z-axis, the refractive index of each layer could be assessed on the basis of the compensation degree. It was also possible to make fully corrected three-dimensional reconstructions of YFP-labeled neurons in live brain samples. Our SA compensation system, called Deep-C, is expected to bring out the best in all correction-collar-equipped objectives for imaging deep regions of heterogeneous tissues.
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Affiliation(s)
- Yoshihiro Ue
- BSI-Olympus Collaboration Center, RIKEN, Hirosawa, Wako-City, 351-0198 Saitama, Japan; OLYMPUS Corporation, Hachioji-City, 192-0033 Tokyo, Japan
| | - Hiromu Monai
- BSI-Olympus Collaboration Center, RIKEN, Hirosawa, Wako-City, 351-0198 Saitama, Japan; Brain Science Institute, Center for Brain Science, RIKEN, Hirosawa, Wako-City, 351-0198 Saitama, Japan
| | - Kaori Higuchi
- BSI-Olympus Collaboration Center, RIKEN, Hirosawa, Wako-City, 351-0198 Saitama, Japan; OLYMPUS Corporation, Hachioji-City, 192-0033 Tokyo, Japan
| | - Daisuke Nishiwaki
- BSI-Olympus Collaboration Center, RIKEN, Hirosawa, Wako-City, 351-0198 Saitama, Japan; OLYMPUS Corporation, Hachioji-City, 192-0033 Tokyo, Japan
| | - Tetsuya Tajima
- BSI-Olympus Collaboration Center, RIKEN, Hirosawa, Wako-City, 351-0198 Saitama, Japan; OLYMPUS Corporation, Hachioji-City, 192-0033 Tokyo, Japan
| | - Kenya Okazaki
- BSI-Olympus Collaboration Center, RIKEN, Hirosawa, Wako-City, 351-0198 Saitama, Japan; OLYMPUS Corporation, Hachioji-City, 192-0033 Tokyo, Japan
| | - Hiroshi Hama
- Brain Science Institute, Center for Brain Science, RIKEN, Hirosawa, Wako-City, 351-0198 Saitama, Japan
| | - Hajime Hirase
- Brain Science Institute, Center for Brain Science, RIKEN, Hirosawa, Wako-City, 351-0198 Saitama, Japan
| | - Atsushi Miyawaki
- BSI-Olympus Collaboration Center, RIKEN, Hirosawa, Wako-City, 351-0198 Saitama, Japan; Brain Science Institute, Center for Brain Science, RIKEN, Hirosawa, Wako-City, 351-0198 Saitama, Japan; Center for Advanced Photonics, RIKEN, Hirosawa, Wako-City, 351-0198 Saitama, Japan.
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29
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Edrei E, Scarcelli G. Brillouin micro-spectroscopy through aberrations via sensorless adaptive optics. APPLIED PHYSICS LETTERS 2018; 112:163701. [PMID: 29713091 PMCID: PMC5902333 DOI: 10.1063/1.5027838] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2018] [Accepted: 03/30/2018] [Indexed: 05/04/2023]
Abstract
Brillouin spectroscopy is a powerful optical technique for non-contact viscoelastic characterizations which has recently found applications in three-dimensional mapping of biological samples. Brillouin spectroscopy performances are rapidly degraded by optical aberrations and have therefore been limited to homogenous transparent samples. In this work, we developed an adaptive optics (AO) configuration designed for Brillouin scattering spectroscopy to engineer the incident wavefront and correct for aberrations. Our configuration does not require direct wavefront sensing and the injection of a "guide-star"; hence, it can be implemented without the need for sample pre-treatment. We used our AO-Brillouin spectrometer in aberrated phantoms and biological samples and obtained improved precision and resolution of Brillouin spectral analysis; we demonstrated 2.5-fold enhancement in Brillouin signal strength and 1.4-fold improvement in axial resolution because of the correction of optical aberrations.
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Affiliation(s)
- Eitan Edrei
- Fischell Department of Bioengineering, University of Maryland, College Park, Maryland 20742, USA
| | - Giuliano Scarcelli
- Fischell Department of Bioengineering, University of Maryland, College Park, Maryland 20742, USA
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30
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Rodríguez C, Liang Y, Lu R, Ji N. Three-photon fluorescence microscopy with an axially elongated Bessel focus. OPTICS LETTERS 2018; 43:1914-1917. [PMID: 29652397 PMCID: PMC5986555 DOI: 10.1364/ol.43.001914] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Volumetric imaging tools that are simple to adopt, flexible, and robust are in high demand in the field of neuroscience, where the ability to image neurons and their networks with high spatiotemporal resolution is essential. Using an axially elongated focus approximating a Bessel beam, in combination with two-photon fluorescence microscopy, has proven successful at such an endeavor. Here, we demonstrate three-photon fluorescence imaging with an axially extended Bessel focus. We use an axicon-based module that allowed for the generation of Bessel foci of varying numerical apertures and axial lengths, and apply this volumetric imaging tool to image mouse brain slices and for in vivo imaging of the mouse brain.
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Affiliation(s)
- Cristina Rodríguez
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147, USA
| | - Yajie Liang
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147, USA
| | - Rongwen Lu
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147, USA
| | - Na Ji
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147, USA
- Department of Physics, Department of Molecular & Cellular Biology, University of California, Berkeley, California 94720, USA
- Corresponding author:
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