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Birnbacher L, Braig EM, Pfeiffer D, Pfeiffer F, Herzen J. Quantitative X-ray phase contrast computed tomography with grating interferometry : Biomedical applications of quantitative X-ray grating-based phase contrast computed tomography. Eur J Nucl Med Mol Imaging 2021; 48:4171-4188. [PMID: 33846846 PMCID: PMC8566444 DOI: 10.1007/s00259-021-05259-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Accepted: 02/11/2021] [Indexed: 11/25/2022]
Abstract
The ability of biomedical imaging data to be of quantitative nature is getting increasingly important with the ongoing developments in data science. In contrast to conventional attenuation-based X-ray imaging, grating-based phase contrast computed tomography (GBPC-CT) is a phase contrast micro-CT imaging technique that can provide high soft tissue contrast at high spatial resolution. While there is a variety of different phase contrast imaging techniques, GBPC-CT can be applied with laboratory X-ray sources and enables quantitative determination of electron density and effective atomic number. In this review article, we present quantitative GBPC-CT with the focus on biomedical applications.
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Affiliation(s)
- Lorenz Birnbacher
- Physics Department, Munich School of Bioengineering, Technical University of Munich, Munich, Germany
- Department of Diagnostic and Interventional Radiology, School of Medicine, Klinikum rechts der Isar, Technical University of Munich, Munich, Germany
| | - Eva-Maria Braig
- Physics Department, Munich School of Bioengineering, Technical University of Munich, Munich, Germany
| | - Daniela Pfeiffer
- Department of Diagnostic and Interventional Radiology, School of Medicine, Klinikum rechts der Isar, Technical University of Munich, Munich, Germany
| | - Franz Pfeiffer
- Physics Department, Munich School of Bioengineering, Technical University of Munich, Munich, Germany
- Department of Diagnostic and Interventional Radiology, School of Medicine, Klinikum rechts der Isar, Technical University of Munich, Munich, Germany
| | - Julia Herzen
- Physics Department, Munich School of Bioengineering, Technical University of Munich, Munich, Germany.
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Ge Y, Liu P, Ni Y, Chen J, Yang J, Su T, Zhang H, Guo J, Zheng H, Li Z, Liang D. Enhancing the X-Ray Differential Phase Contrast Image Quality With Deep Learning Technique. IEEE Trans Biomed Eng 2020; 68:1751-1758. [PMID: 32746069 DOI: 10.1109/tbme.2020.3011119] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
OBJECTIVE The purpose of this work is to investigate the feasibility of using deep convolutional neural network (CNN) to improve the image quality of a grating-based X-ray differential phase contrast imaging (XPCI) system. METHODS In this work, a novel deep CNN based phase signal extraction and image noise suppression algorithm (named as XP-NET) is developed. The numerical phase phantom, the ex vivo biological specimen and the ACR breast phantom are evaluated via the numerical simulations and experimental studies, separately. Moreover, images are also evaluated under different low radiation levels to verify its dose reduction capability. RESULTS Compared with the conventional analytical method, the novel XP-NET algorithm is able to reduce the bias of large DPC signals and hence increasing the DPC signal accuracy by more than 15%. Additionally, the XP-NET is able to reduce DPC image noise by about 50% for low dose DPC imaging tasks. CONCLUSION This proposed novel end-to-end supervised XP-NET has a great potential to improve the DPC signal accuracy, reduce image noise, and preserve object details. SIGNIFICANCE We demonstrate that the deep CNN technique provides a promising approach to improve the grating-based XPCI performance and its dose efficiency in future biomedical applications.
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Ji X, Zhang R, Chen GH, Li K. Impact of anti-charge sharing on the zero-frequency detective quantum efficiency of CdTe-based photon counting detector system: cascaded systems analysis and experimental validation. Phys Med Biol 2018; 63:095003. [PMID: 29582785 PMCID: PMC5975362 DOI: 10.1088/1361-6560/aab9c9] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Inter-pixel communication and anti-charge sharing (ACS) technologies have been introduced to photon counting detector (PCD) systems to address the undesirable charge sharing problem. In addition to improving the energy resolution of PCD, ACS may also influence other aspects of PCD performance such as detector multiplicity (i.e. the number of pixels triggered by each interacted photon) and detective quantum efficiency (DQE). In this work, a theoretical model was developed to address how ACS impacts the multiplicity and zero-frequency DQE [DQE(0)] of PCD systems. The work focused on cadmium telluride (CdTe)-based PCD that often involves the generation and transport of K-fluorescence photons. Under the parallel cascaded systems analysis framework, the theory takes both photoelectric and scattering effects into account, and it also considers both the reabsorption and escape of photons. In a new theoretical treatment of ACS, it was considered as a modified version of the conventional single pixel (i.e. non-ACS) mode, but with reduced charge spreading distance and K-fluorescence travel distance. The proposed theoretical model does not require prior knowledge of the detailed ACS implementation method for each specific PCD, and its parameters can be experimentally determined using a radioisotope without invoking any Monte-Carlo simulation. After determining the model parameters, independent validation experiments were performed using a diagnostic x-ray tube and four different polychromatic beams (from 50 to 120 kVp). Both the theoretical and experimental results demonstrate that ACS increased the first and second moments of multiplicity for a majority of the x-ray energy and threshold levels tested, except when the threshold level was much lower than the x-ray energy level. However, ACS always improved DQE(0) at all energy and threshold levels tested.
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Affiliation(s)
- Xu Ji
- Department of Medical Physics, University of Wisconsin-Madison, 1111 Highland Avenue, Madison, WI 53705
| | - Ran Zhang
- Department of Medical Physics, University of Wisconsin-Madison, 1111 Highland Avenue, Madison, WI 53705
| | - Guang-Hong Chen
- Department of Medical Physics, University of Wisconsin-Madison, 1111 Highland Avenue, Madison, WI 53705
- Department of Radiology, University of Wisconsin-Madison, 600 Highland Avenue, Madison, WI 53792
| | - Ke Li
- Department of Medical Physics, University of Wisconsin-Madison, 1111 Highland Avenue, Madison, WI 53705
- Department of Radiology, University of Wisconsin-Madison, 600 Highland Avenue, Madison, WI 53792
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Ge Y, Ji X, Zhang R, Li K, Chen GH. K-edge energy-based calibration method for photon counting detectors. Phys Med Biol 2017; 63:015022. [PMID: 29072192 DOI: 10.1088/1361-6560/aa9637] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
In recent years, potential applications of energy-resolved photon counting detectors (PCDs) in the x-ray medical imaging field have been actively investigated. Unlike conventional x-ray energy integration detectors, PCDs count the number of incident x-ray photons within certain energy windows. For PCDs, the interactions between x-ray photons and photoconductor generate electronic voltage pulse signals. The pulse height of each signal is proportional to the energy of the incident photons. By comparing the pulse height with the preset energy threshold values, x-ray photons with specific energies are recorded and sorted into different energy bins. To quantitatively understand the meaning of the energy threshold values, and thus to assign an absolute energy value to each energy bin, energy calibration is needed to establish the quantitative relationship between the threshold values and the corresponding effective photon energies. In practice, the energy calibration is not always easy, due to the lack of well-calibrated energy references for the working energy range of the PCDs. In this paper, a new method was developed to use the precise knowledge of the characteristic K-edge energy of materials to perform energy calibration. The proposed method was demonstrated using experimental data acquired from three K-edge materials (viz., iodine, gadolinium, and gold) on two different PCDs (Hydra and Flite, XCounter, Sweden). Finally, the proposed energy calibration method was further validated using a radioactive isotope (Am-241) with a known decay energy spectrum.
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Affiliation(s)
- Yongshuai Ge
- Department of Medical Physics, University of Wisconsin-Madison, 1111 Highland Avenue, Madison, WI 53705, United States of America. The first two authors (Y Ge and X Ji) made equal contributions to this work and are both considered as the first author
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Ge Y, Zhang R, Li K, Chen GH. Improving radiation dose efficiency of X-ray differential phase contrast imaging using an energy-resolving grating interferometer and a novel rank constraint. OPTICS EXPRESS 2016; 24:12955-12968. [PMID: 27410315 PMCID: PMC5025210 DOI: 10.1364/oe.24.012955] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2016] [Revised: 05/23/2016] [Accepted: 05/24/2016] [Indexed: 06/06/2023]
Abstract
In this paper, a novel method was developed to improve the radiation dose efficiency, viz., contrast to noise ratio normalized by dose (CNRD), of the grating-based X-ray differential phase contrast (DPC) imaging system that is integrated with an energy-resolving photon counting detector. The method exploits the low-dimensionality of the spatial-spectral DPC image matrix acquired from different energy windows. A low rank approximation of the spatial-spectral image matrix was developed to reduce image noise while retaining the DPC signal accuracy for every energy window. Numerical simulations and experimental phantom studies have been performed to validate the proposed method by showing noise reduction and CNRD improvement for each energy window.
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Affiliation(s)
- Yongshuai Ge
- Department of Medical Physics, University of Wisconsin School of Medicine and Public Health, Madison, WI,
USA
| | - Ran Zhang
- Department of Medical Physics, University of Wisconsin School of Medicine and Public Health, Madison, WI,
USA
| | - Ke Li
- Department of Medical Physics, University of Wisconsin School of Medicine and Public Health, Madison, WI,
USA
- Department of Radiology, University of Wisconsin School of Medicine and Public Health, Madison, WI,
USA
| | - Guang-Hong Chen
- Department of Medical Physics, University of Wisconsin School of Medicine and Public Health, Madison, WI,
USA
- Department of Radiology, University of Wisconsin School of Medicine and Public Health, Madison, WI,
USA
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Endrizzi M, Vittoria FA, Kallon G, Basta D, Diemoz PC, Vincenzi A, Delogu P, Bellazzini R, Olivo A. Achromatic approach to phase-based multi-modal imaging with conventional X-ray sources. OPTICS EXPRESS 2015; 23:16473-16480. [PMID: 26193618 DOI: 10.1364/oe.23.016473] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Compatibility with polychromatic radiation is an important requirement for an imaging system using conventional rotating anode X-ray sources. With a commercially available energy-resolving single-photon-counting detector we investigated how broadband radiation affects the performance of a multi-modal edge-illumination phase-contrast imaging system. The effect of X-ray energy on phase retrieval is presented, and the achromaticity of the method is experimentally demonstrated. Comparison with simulated measurements integrating over the energy spectrum shows that there is no significant loss of image quality due to the use of polychromatic radiation. This means that, to a good approximation, the imaging system exploits radiation in the same way at all energies typically used in hard-X-ray imaging.
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Koehler T, Daerr H, Martens G, Kuhn N, Löscher S, van Stevendaal U, Roessl E. Slit-scanning differential x-ray phase-contrast mammography: Proof-of-concept experimental studies. Med Phys 2015; 42:1959-65. [DOI: 10.1118/1.4914420] [Citation(s) in RCA: 59] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Epple FM, Ehn S, Thibault P, Koehler T, Potdevin G, Herzen J, Pennicard D, Graafsma H, Noël PB, Pfeiffer F. Phase unwrapping in spectral X-ray differential phase-contrast imaging with an energy-resolving photon-counting pixel detector. IEEE TRANSACTIONS ON MEDICAL IMAGING 2015; 34:816-823. [PMID: 25163054 DOI: 10.1109/tmi.2014.2349852] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Grating-based differential phase-contrast imaging has proven to be feasible with conventional X-ray sources. The polychromatic spectrum generally limits the performance of the interferometer but benefit can be gained with an energy-sensitive detector. In the presented work, we employ the energy-discrimination capability to correct for phase-wrapping artefacts. We propose to use the phase shifts, which are measured in distinct energy bins, to estimate the optimal phase shift in the sense of maximum likelihood. We demonstrate that our method is able to correct for phase-wrapping artefacts, to improve the contrast-to-noise ratio and to reduce beam hardening due to the modelled energy dependency. The method is evaluated on experimental data which are measured with a laboratory Talbot-Lau interferometer equipped with a conventional polychromatic X-ray source and an energy-sensitive photon-counting pixel detector. Our work shows, that spectral imaging is an important step to move differential phase-contrast imaging closer to pre-clinical and clinical applications, where phase wrapping is particularly problematic.
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Pelzer G, Zang A, Anton G, Bayer F, Horn F, Kraus M, Rieger J, Ritter A, Wandner J, Weber T, Fauler A, Fiederle M, Wong WS, Campbell M, Meiser J, Meyer P, Mohr J, Michel T. Energy weighted x-ray dark-field imaging. OPTICS EXPRESS 2014; 22:24507-24515. [PMID: 25322026 DOI: 10.1364/oe.22.024507] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The dark-field image obtained in grating-based x-ray phase-contrast imaging can provide information about the objects' microstructures on a scale smaller than the pixel size even with low geometric magnification. In this publication we demonstrate that the dark-field image quality can be enhanced with an energy-resolving pixel detector. Energy-resolved x-ray dark-field images were acquired with a 16-energy-channel photon-counting pixel detector with a 1 mm thick CdTe sensor in a Talbot-Lau x-ray interferometer. A method for contrast-noise-ratio (CNR) enhancement is proposed and validated experimentally. In measurements, a CNR improvement by a factor of 1.14 was obtained. This is equivalent to a possible radiation dose reduction of 23%.
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Wang Z, Gao K, Wang D, Wu Z, Chen H, Wang S, Wu Z. Single-shot x-ray phase imaging with grating interferometry and photon-counting detectors. OPTICS LETTERS 2014; 39:877-879. [PMID: 24562230 DOI: 10.1364/ol.39.000877] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
In this Letter, we present a single-shot approach to quantitatively retrieve x-ray absorption and phase shift in grating interferometry. The proposed approach makes use of the energy-resolving capability of x-ray photon-counting detectors. The retrieval method is derived and presented and is tested based on numerical simulations, including photon shot noise. The good agreement between retrieval results and theoretical values confirms the feasibility of the presented approach.
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