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Gustschin A, Riedel M, Taphorn K, Petrich C, Gottwald W, Noichl W, Busse M, Francis SE, Beckmann F, Hammel JU, Moosmann J, Thibault P, Herzen J. High-resolution and sensitivity bi-directional x-ray phase contrast imaging using 2D Talbot array illuminators. OPTICA 2021; 8:1588-1595. [PMID: 37829605 PMCID: PMC10567101 DOI: 10.1364/optica.441004] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/18/2021] [Revised: 11/01/2021] [Accepted: 11/01/2021] [Indexed: 10/14/2023]
Abstract
Two-dimensional (2D) Talbot array illuminators (TAIs) were designed, fabricated, and evaluated for high-resolution high-contrast x-ray phase imaging of soft tissue at 10-20 keV. The TAIs create intensity modulations with a high compression ratio on the micrometer scale at short propagation distances. Their performance was compared with various other wavefront markers in terms of period, visibility, flux efficiency, and flexibility to be adapted for limited beam coherence and detector resolution. Differential x-ray phase contrast and dark-field imaging were demonstrated with a one-dimensional, linear phase stepping approach yielding 2D phase sensitivity using unified modulated pattern analysis (UMPA) for phase retrieval. The method was employed for x-ray phase computed tomography reaching a resolution of 3 µm on an unstained murine artery. It opens new possibilities for three-dimensional, non-destructive, and quantitative imaging of soft matter such as virtual histology. The phase modulators can also be used for various other x-ray applications such as dynamic phase imaging, super-resolution structured illumination microscopy, or wavefront sensing.
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Affiliation(s)
- Alex Gustschin
- Department of Physics and Munich School of Bioengineering, Technical University of Munich, 85748, Garching, Germany
| | - Mirko Riedel
- Department of Physics and Munich School of Bioengineering, Technical University of Munich, 85748, Garching, Germany
- Institute of Materials Physics, Helmholtz-Zentrum Hereon, Max-Planck-Str. 1, 21502 Geesthacht, Germany
| | - Kirsten Taphorn
- Department of Physics and Munich School of Bioengineering, Technical University of Munich, 85748, Garching, Germany
| | - Christian Petrich
- Department of Physics and Munich School of Bioengineering, Technical University of Munich, 85748, Garching, Germany
| | - Wolfgang Gottwald
- Department of Physics and Munich School of Bioengineering, Technical University of Munich, 85748, Garching, Germany
| | - Wolfgang Noichl
- Department of Physics and Munich School of Bioengineering, Technical University of Munich, 85748, Garching, Germany
| | - Madleen Busse
- Department of Physics and Munich School of Bioengineering, Technical University of Munich, 85748, Garching, Germany
| | - Sheila E. Francis
- Department of Infection, Immunity and Cardiovascular Disease, Medical School, University of Sheffield S10 2RX, UK
| | - Felix Beckmann
- Institute of Materials Physics, Helmholtz-Zentrum Hereon, Max-Planck-Str. 1, 21502 Geesthacht, Germany
| | - Jörg U. Hammel
- Institute of Materials Physics, Helmholtz-Zentrum Hereon, Max-Planck-Str. 1, 21502 Geesthacht, Germany
| | - Julian Moosmann
- Institute of Materials Physics, Helmholtz-Zentrum Hereon, Max-Planck-Str. 1, 21502 Geesthacht, Germany
| | - Pierre Thibault
- Department of Physics, University of Trieste, Trieste 34217, Italy
| | - Julia Herzen
- Department of Physics and Munich School of Bioengineering, Technical University of Munich, 85748, Garching, Germany
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Birnbacher L, Braig EM, Pfeiffer D, Pfeiffer F, Herzen J. Quantitative X-ray phase contrast computed tomography with grating interferometry : Biomedical applications of quantitative X-ray grating-based phase contrast computed tomography. Eur J Nucl Med Mol Imaging 2021; 48:4171-4188. [PMID: 33846846 PMCID: PMC8566444 DOI: 10.1007/s00259-021-05259-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Accepted: 02/11/2021] [Indexed: 11/25/2022]
Abstract
The ability of biomedical imaging data to be of quantitative nature is getting increasingly important with the ongoing developments in data science. In contrast to conventional attenuation-based X-ray imaging, grating-based phase contrast computed tomography (GBPC-CT) is a phase contrast micro-CT imaging technique that can provide high soft tissue contrast at high spatial resolution. While there is a variety of different phase contrast imaging techniques, GBPC-CT can be applied with laboratory X-ray sources and enables quantitative determination of electron density and effective atomic number. In this review article, we present quantitative GBPC-CT with the focus on biomedical applications.
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Affiliation(s)
- Lorenz Birnbacher
- Physics Department, Munich School of Bioengineering, Technical University of Munich, Munich, Germany
- Department of Diagnostic and Interventional Radiology, School of Medicine, Klinikum rechts der Isar, Technical University of Munich, Munich, Germany
| | - Eva-Maria Braig
- Physics Department, Munich School of Bioengineering, Technical University of Munich, Munich, Germany
| | - Daniela Pfeiffer
- Department of Diagnostic and Interventional Radiology, School of Medicine, Klinikum rechts der Isar, Technical University of Munich, Munich, Germany
| | - Franz Pfeiffer
- Physics Department, Munich School of Bioengineering, Technical University of Munich, Munich, Germany
- Department of Diagnostic and Interventional Radiology, School of Medicine, Klinikum rechts der Isar, Technical University of Munich, Munich, Germany
| | - Julia Herzen
- Physics Department, Munich School of Bioengineering, Technical University of Munich, Munich, Germany.
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Meyer S, Shi SZ, Shapira N, Maidment ADA, Noël PB. Quantitative analysis of speckle-based X-ray dark-field imaging using numerical wave-optics simulations. Sci Rep 2021; 11:16113. [PMID: 34373478 PMCID: PMC8352882 DOI: 10.1038/s41598-021-95227-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Accepted: 07/12/2021] [Indexed: 11/24/2022] Open
Abstract
The dark-field signal measures the small-angle scattering strength and provides complementary diagnostic information. This is of particular interest for lung imaging due to the pronounced small-angle scatter from the alveolar microstructure. However, most dark-field imaging techniques are relatively complex, dose-inefficient, and require sophisticated optics and highly coherent X-ray sources. Speckle-based imaging promises to overcome these limitations due to its simple and versatile setup, only requiring the addition of a random phase modulator to conventional X-ray equipment. We investigated quantitatively the influence of sample structure, setup geometry, and source energy on the dark-field signal in speckle-based X-ray imaging with wave-optics simulations for ensembles of micro-spheres. We show that the dark-field signal is accurately predicted via a model originally derived for grating interferometry when using the mean frequency of the speckle pattern power spectral density as the characteristic speckle size. The size directly reflects the correlation length of the diffuser surface and did not change with energy or propagation distance within the near-field. The dark-field signal had a distinct dependence on sample structure and setup geometry but was also affected by beam hardening-induced modifications of the visibility spectrum. This study quantitatively demonstrates the behavior of the dark-field signal in speckle-based X-ray imaging.
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Affiliation(s)
- Sebastian Meyer
- Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19103, USA.
| | - Serena Z Shi
- Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19103, USA
| | - Nadav Shapira
- Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19103, USA
| | - Andrew D A Maidment
- Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19103, USA
| | - Peter B Noël
- Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19103, USA.
- Department of Diagnostic and Interventional Radiology, School of Medicine and Klinikum rechts der Isar, Technical University of Munich, 81675, Munich, Germany.
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Tian N, Jiang H, Li A, Liang D, Yu F. High-precision speckle-tracking X-ray imaging with adaptive subset size choices. Sci Rep 2020; 10:14238. [PMID: 32859971 PMCID: PMC7455712 DOI: 10.1038/s41598-020-71158-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2019] [Accepted: 07/13/2020] [Indexed: 11/09/2022] Open
Abstract
Speckle-tracking imaging has the advantages of simple setup and high-sensitivity to slowly varying phase gradients. Subset size choice is regarded as a trade-off problem for speckle-tracking X-ray imaging where one needs to balance the spatial resolution and accuracy, where the subset was defined as the region of interest of windowing choice for digital image correlation algorithm. An adaptive subset size choice method based on a Fourier transform for effectively detecting sample phase information without foreknowledge of the sample structure is presented in this study. The speckle-tracking phase-contrast and the form of dark-field imaging based on this method have the advantages of (i) high resolution and time saving compared to large subset choice and (ii) partially improvement the influence from experimental noises, background fluctuations, and false signals compared to small subset choice at the same time. This method has proven to be particularly robust in the experimental condition of poor signal-to-noise ratio. The proposed method may be expanded to all speckle-based imaging methods and other imaging techniques based on the subset or window matching.
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Affiliation(s)
- Naxi Tian
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Jialuo Road 2019, Jiading District, Shanghai, 201800, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Hui Jiang
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Jialuo Road 2019, Jiading District, Shanghai, 201800, China. .,Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Zhangheng Road 239, Pudong District, Shanghai, 201204, China.
| | - Aiguo Li
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Jialuo Road 2019, Jiading District, Shanghai, 201800, China.,Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Zhangheng Road 239, Pudong District, Shanghai, 201204, China
| | - Dongxu Liang
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Jialuo Road 2019, Jiading District, Shanghai, 201800, China.,Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Zhangheng Road 239, Pudong District, Shanghai, 201204, China
| | - Fucheng Yu
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Jialuo Road 2019, Jiading District, Shanghai, 201800, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
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Tian N, Jiang H, Li A, Liang D, Yan S, Zhang Z. Influence of diffuser grain size on the speckle tracking technique. JOURNAL OF SYNCHROTRON RADIATION 2020; 27:146-157. [PMID: 31868747 DOI: 10.1107/s1600577519015200] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2019] [Accepted: 11/11/2019] [Indexed: 06/10/2023]
Abstract
The speckle-based X-ray imaging technique (SBT), which includes the three imaging modalities of absorption, phase contrast and dark field, is widely used in many fields. However, the influence of the grain size of the diffuser, the coherence of the X-ray source and the pixel size of the detector on the multi-mode imaging quality of SBT is still woefully unclear. In this paper, the whole SBT process is simulated and the influence of these three factors on image quality is discussed. Based on this discussion, the grain size of the diffuser for SBT applications should be limited by the pixel size of the detector and the coherence length of the X-ray source. According to analysis of the noise signal and correlation map, a suitable grain size is an indispensable condition for high-quality SBT images, because an excessively small or large grain size degrades the resolution of the imaging results and generates false signals. In addition, the power spectral density of the measured raw speckle patterns demonstrates that a smaller grain can better retain high-frequency information from an imaged sample. The simulated and experimental results verify these conclusions. The conclusions of this work will be helpful in designing suitable experimental setups for SBT applications and have the potential to promote the performance of SBT in other applications, such as X-ray optics metrology and coherence measurement.
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Affiliation(s)
- Naxi Tian
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Jiading District, Shanghai 201800, People's Republic of China
| | - Hui Jiang
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Jiading District, Shanghai 201800, People's Republic of China
| | - Aiguo Li
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Jiading District, Shanghai 201800, People's Republic of China
| | - Dongxu Liang
- Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Zhangheng Road 239, Pudong District, Shanghai 201204, People's Republic of China
| | - Shuai Yan
- Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Zhangheng Road 239, Pudong District, Shanghai 201204, People's Republic of China
| | - Zengyan Zhang
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Jiading District, Shanghai 201800, People's Republic of China
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