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For: Wang A, Garmann RF, Manoharan VN. Tracking E. coli runs and tumbles with scattering solutions and digital holographic microscopy. Opt Express 2016;24:23719-23725. [PMID: 27828208 DOI: 10.1364/oe.24.023719] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Number Cited by Other Article(s)
1
Rawat S, Trius Béjar J, Wang A. Characterization of Optical, Thermal, and Viscoelastic Properties of Pollenkitt in Angiosperm Pollen Using In-Line Digital Holographic Microscopy. ACS APPLIED BIO MATERIALS 2024;7:4029-4038. [PMID: 38756048 DOI: 10.1021/acsabm.4c00367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/18/2024]
2
Kim J, Lee SJ. Digital in-line holographic microscopy for label-free identification and tracking of biological cells. Mil Med Res 2024;11:38. [PMID: 38867274 PMCID: PMC11170804 DOI: 10.1186/s40779-024-00541-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/26/2023] [Accepted: 05/31/2024] [Indexed: 06/14/2024]  Open
3
Matthews SA, Coelho C, Rodriguez Salas EE, Brock EE, Hodge VJ, Walker JA, Wilson LG. Real-time 3D tracking of swimming microbes using digital holographic microscopy and deep learning. PLoS One 2024;19:e0301182. [PMID: 38669245 PMCID: PMC11051601 DOI: 10.1371/journal.pone.0301182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Accepted: 03/12/2024] [Indexed: 04/28/2024]  Open
4
Dubay MM, Acres J, Riekeles M, Nadeau JL. Recent advances in experimental design and data analysis to characterize prokaryotic motility. J Microbiol Methods 2023;204:106658. [PMID: 36529156 DOI: 10.1016/j.mimet.2022.106658] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Revised: 12/13/2022] [Accepted: 12/13/2022] [Indexed: 12/23/2022]
5
Elius M, Ling H. Effect of hologram plane position on particle tracking using digital holographic microscopy. APPLIED OPTICS 2022;61:9415-9422. [PMID: 36606887 DOI: 10.1364/ao.473763] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Accepted: 10/13/2022] [Indexed: 06/17/2023]
6
Cheng Z, Zhang Y, Liu X, Guo C, He C, Liu G, Song H. Time-Resolved Four-Channel Jones Matrix Measurement of Birefringent Materials Using an Ultrafast Laser. MATERIALS (BASEL, SWITZERLAND) 2022;15:7813. [PMID: 36363406 PMCID: PMC9654291 DOI: 10.3390/ma15217813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/08/2022] [Revised: 10/30/2022] [Accepted: 11/01/2022] [Indexed: 06/16/2023]
7
Zhang J, Huang L, Chen B, Yan L. Accurate extraction of the +1 term spectrum with spurious spectrum elimination in off-axis digital holography. OPTICS EXPRESS 2022;30:28142-28157. [PMID: 36236968 DOI: 10.1364/oe.464491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2022] [Accepted: 07/06/2022] [Indexed: 06/16/2023]
8
Rawat S, Wendoloski J, Wang A. cGAN-assisted imaging through stationary scattering media. OPTICS EXPRESS 2022;30:18145-18155. [PMID: 36221621 DOI: 10.1364/oe.450321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2022] [Accepted: 05/03/2022] [Indexed: 06/16/2023]
9
Palma V, Gutiérrez MS, Vargas O, Parthasarathy R, Navarrete P. Methods to Evaluate Bacterial Motility and Its Role in Bacterial–Host Interactions. Microorganisms 2022;10:microorganisms10030563. [PMID: 35336138 PMCID: PMC8953368 DOI: 10.3390/microorganisms10030563] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Revised: 02/02/2022] [Accepted: 02/06/2022] [Indexed: 11/16/2022]  Open
10
Kaddour H, Tranquille M, Okeoma CM. The Past, the Present, and the Future of the Size Exclusion Chromatography in Extracellular Vesicles Separation. Viruses 2021;13:2272. [PMID: 34835078 PMCID: PMC8618570 DOI: 10.3390/v13112272] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Revised: 11/02/2021] [Accepted: 11/02/2021] [Indexed: 01/13/2023]  Open
11
Shangraw M, Ling H. Improving axial localization of weak phase particles in digital in-line holography. APPLIED OPTICS 2021;60:7099-7106. [PMID: 34612994 DOI: 10.1364/ao.435021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Accepted: 07/18/2021] [Indexed: 06/13/2023]
12
Wong GCL, Antani JD, Lele PP, Chen J, Nan B, Kühn MJ, Persat A, Bru JL, Høyland-Kroghsbo NM, Siryaporn A, Conrad JC, Carrara F, Yawata Y, Stocker R, V Brun Y, Whitfield GB, Lee CK, de Anda J, Schmidt WC, Golestanian R, O'Toole GA, Floyd KA, Yildiz FH, Yang S, Jin F, Toyofuku M, Eberl L, Nomura N, Zacharoff LA, El-Naggar MY, Yalcin SE, Malvankar NS, Rojas-Andrade MD, Hochbaum AI, Yan J, Stone HA, Wingreen NS, Bassler BL, Wu Y, Xu H, Drescher K, Dunkel J. Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation. Phys Biol 2021;18. [PMID: 33462162 PMCID: PMC8506656 DOI: 10.1088/1478-3975/abdc0e] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2020] [Accepted: 01/14/2021] [Indexed: 11/29/2022]
13
Martin C, Leahy B, Manoharan VN. Improving holographic particle characterization by modeling spherical aberration. OPTICS EXPRESS 2021;29:18212-18223. [PMID: 34154082 DOI: 10.1364/oe.424043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2021] [Accepted: 05/17/2021] [Indexed: 06/13/2023]
14
Altman LE, Quddus R, Cheong FC, Grier DG. Holographic characterization and tracking of colloidal dimers in the effective-sphere approximation. SOFT MATTER 2021;17:2695-2703. [PMID: 33630984 DOI: 10.1039/d0sm02262d] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
15
Gibson T, Bedrossian M, Serabyn E, Lindensmith C, Nadeau JL. Using the Gouy phase anomaly to localize and track bacteria in digital holographic microscopy 4D images. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2021;38:A11-A18. [PMID: 33690523 DOI: 10.1364/josaa.404004] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Accepted: 10/19/2020] [Indexed: 06/12/2023]
16
Shangraw M, Ling H. Separating twin images in digital holographic microscopy using weak scatterers. APPLIED OPTICS 2021;60:626-634. [PMID: 33690444 DOI: 10.1364/ao.410167] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2020] [Accepted: 12/14/2020] [Indexed: 06/12/2023]
17
Acres J, Nadeau J. 2D vs 3D tracking in bacterial motility analysis. AIMS BIOPHYSICS 2021. [DOI: 10.3934/biophy.2021030] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
18
Barkley S, Dimiduk TG, Fung J, Kaz DM, Manoharan VN, McGorty R, Perry RW, Wang A. Holographic Microscopy With Python and HoloPy. Comput Sci Eng 2020. [DOI: 10.1109/mcse.2019.2923974] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
19
Kaddour H, Lyu Y, Shouman N, Mohan M, Okeoma CM. Development of Novel High-Resolution Size-Guided Turbidimetry-Enabled Particle Purification Liquid Chromatography (PPLC): Extracellular Vesicles and Membraneless Condensates in Focus. Int J Mol Sci 2020;21:ijms21155361. [PMID: 32731547 PMCID: PMC7432554 DOI: 10.3390/ijms21155361] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2020] [Revised: 07/20/2020] [Accepted: 07/23/2020] [Indexed: 12/12/2022]  Open
20
Leahy B, Alexander R, Martin C, Barkley S, Manoharan VN. Large depth-of-field tracking of colloidal spheres in holographic microscopy by modeling the objective lens. OPTICS EXPRESS 2020;28:1061-1075. [PMID: 32121823 DOI: 10.1364/oe.382159] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2019] [Accepted: 12/13/2019] [Indexed: 06/10/2023]
21
Bianchi S, Saglimbeni F, Frangipane G, Dell'Arciprete D, Di Leonardo R. 3D dynamics of bacteria wall entrapment at a water-air interface. SOFT MATTER 2019;15:3397-3406. [PMID: 30933209 DOI: 10.1039/c9sm00077a] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
22
Flewellen JL, Zaid IM, Berry RM. A multi-mode digital holographic microscope. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2019;90:023705. [PMID: 30831696 DOI: 10.1063/1.5066556] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2018] [Accepted: 01/31/2019] [Indexed: 06/09/2023]
23
Zhang H, Stangner T, Wiklund K, Andersson M. Object plane detection and phase retrieval from single-shot holograms using multi-wavelength in-line holography. APPLIED OPTICS 2018;57:9855-9862. [PMID: 30462021 DOI: 10.1364/ao.57.009855] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2018] [Accepted: 10/15/2018] [Indexed: 06/09/2023]
24
Jung J, Kim J, Seo MK, Park Y. Measurements of polarization-dependent angle-resolved light scattering from individual microscopic samples using Fourier transform light scattering. OPTICS EXPRESS 2018;26:7701-7711. [PMID: 29609322 DOI: 10.1364/oe.26.007701] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2017] [Accepted: 02/24/2018] [Indexed: 05/27/2023]
25
Farthing NE, Findlay RC, Jikeli JF, Walrad PB, Bees MA, Wilson LG. Simultaneous two-color imaging in digital holographic microscopy. OPTICS EXPRESS 2017;25:28489-28500. [PMID: 31956278 PMCID: PMC6968951 DOI: 10.1364/oe.25.028489] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2017] [Accepted: 09/14/2017] [Indexed: 05/24/2023]
26
Vandewiele S, Strubbe F, Schreuer C, Neyts K, Beunis F. Low coherence digital holography microscopy based on the Lorenz-Mie scattering model. OPTICS EXPRESS 2017;25:25853-25866. [PMID: 29041248 DOI: 10.1364/oe.25.025853] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2017] [Accepted: 09/30/2017] [Indexed: 06/07/2023]
27
Gao Y, Yu Y, Sanchez L, Yu Y. Seeing the unseen: Imaging rotation in cells with designer anisotropic particles. Micron 2017;101:123-131. [PMID: 28711013 DOI: 10.1016/j.micron.2017.07.002] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2017] [Revised: 07/06/2017] [Accepted: 07/06/2017] [Indexed: 01/27/2023]
28
Lemoine A, Delvigne F, Bockisch A, Neubauer P, Junne S. Tools for the determination of population heterogeneity caused by inhomogeneous cultivation conditions. J Biotechnol 2017;251:84-93. [DOI: 10.1016/j.jbiotec.2017.03.020] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2016] [Revised: 03/17/2017] [Accepted: 03/21/2017] [Indexed: 01/01/2023]
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