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Hong Y, Ye F, Qian J, Gao X, Inman JT, Wang MD. Optical torque calculations and measurements for DNA torsional studies. Biophys J 2024; 123:3080-3089. [PMID: 38961622 PMCID: PMC11428274 DOI: 10.1016/j.bpj.2024.07.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Revised: 05/20/2024] [Accepted: 07/01/2024] [Indexed: 07/05/2024] Open
Abstract
The angular optical trap (AOT) is a powerful instrument for measuring the torsional and rotational properties of a biological molecule. Thus far, AOT studies of DNA torsional mechanics have been carried out using a high numerical aperture oil-immersion objective, which permits strong trapping but inevitably introduces spherical aberrations due to the glass-aqueous interface. However, the impact of these aberrations on torque measurements is not fully understood experimentally, partly due to a lack of theoretical guidance. Here, we present a numerical platform based on the finite element method to calculate forces and torques on a trapped quartz cylinder. We have also developed a new experimental method to accurately determine the shift in the trapping position due to the spherical aberrations by using a DNA molecule as a distance ruler. We found that the calculated and measured focal shift ratios are in good agreement. We further determined how the angular trap stiffness depends on the trap height and the cylinder displacement from the trap center and found full agreement between predictions and measurements. As a further verification of the methodology, we showed that DNA torsional properties, which are intrinsic to DNA, could be determined robustly under different trap heights and cylinder displacements. Thus, this work has laid both a theoretical and experimental framework that can be readily extended to investigate the trapping forces and torques exerted on particles with arbitrary shapes and optical properties.
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Affiliation(s)
- Yifeng Hong
- Department of Electrical and Computer Engineering, Cornell University, Ithaca, New York
| | - Fan Ye
- Howard Hughes Medical Institute, Cornell University, Ithaca, New York; Department of Physics & LASSP, Cornell University, Ithaca, New York
| | - Jin Qian
- Department of Physics & LASSP, Cornell University, Ithaca, New York
| | - Xiang Gao
- Howard Hughes Medical Institute, Cornell University, Ithaca, New York; Department of Physics & LASSP, Cornell University, Ithaca, New York
| | - James T Inman
- Howard Hughes Medical Institute, Cornell University, Ithaca, New York; Department of Physics & LASSP, Cornell University, Ithaca, New York
| | - Michelle D Wang
- Howard Hughes Medical Institute, Cornell University, Ithaca, New York; Department of Physics & LASSP, Cornell University, Ithaca, New York.
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Paul NK, Gomez-Diaz JS. Tunable optical traps over nonreciprocal surfaces. OPTICS EXPRESS 2022; 30:46344-46356. [PMID: 36558591 DOI: 10.1364/oe.476269] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Accepted: 11/11/2022] [Indexed: 06/17/2023]
Abstract
We propose engineering optical traps over plasmonic surfaces and precisely controlling the trap position with an external bias by inducing in-plane nonreciprocity on the surface. The platform employs an incident Gaussian beam to polarize targeted nanoparticles, and exploits the interplay between nonreciprocal and spin-orbit lateral recoil forces to construct stable optical traps and manipulate their position within the surface. To model this process, we develop a theoretical framework based on the Lorentz force combined with nonreciprocal Green's functions and apply it to calculate the trapping potential. Rooted on this formalism, we explore the exciting possibilities offered by graphene to engineer stable optical traps using low-power laser beams in the mid-IR and to manipulate the trap position in a continuous manner by applying a longitudinal drift bias. Nonreciprocal metasurfaces may open new possibilities to trap, assemble and manipulate nanoparticles and overcome many challenges faced by conventional optical tweezers while dealing with nanoscale objects.
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Ye F, Inman JT, Hong Y, Hall PM, Wang MD. Resonator nanophotonic standing-wave array trap for single-molecule manipulation and measurement. Nat Commun 2022; 13:77. [PMID: 35013276 PMCID: PMC8748738 DOI: 10.1038/s41467-021-27709-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2021] [Accepted: 12/03/2021] [Indexed: 11/29/2022] Open
Abstract
Nanophotonic tweezers represent emerging platforms with significant potential for parallel manipulation and measurements of single biological molecules on-chip. However, trapping force generation represents a substantial obstacle for their broader utility. Here, we present a resonator nanophotonic standing-wave array trap (resonator-nSWAT) that demonstrates significant force enhancement. This platform integrates a critically-coupled resonator design to the nSWAT and incorporates a novel trap reset scheme. The nSWAT can now perform standard single-molecule experiments, including stretching DNA molecules to measure their force-extension relations, unzipping DNA molecules, and disrupting and mapping protein-DNA interactions. These experiments have realized trapping forces on the order of 20 pN while demonstrating base-pair resolution with measurements performed on multiple molecules in parallel. Thus, the resonator-nSWAT platform now meets the benchmarks of a table-top precision optical trapping instrument in terms of force generation and resolution. This represents the first demonstration of a nanophotonic platform for such single-molecule experiments. Applications of nanophotonic tweezers have been limited by the low trapping force. Here, the authors present enhanced force generation in a nanophotonic standing-wave array trap by integrating a critically-coupled resonator design and demonstrate common single-molecule experiments.
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Affiliation(s)
- Fan Ye
- Howard Hughes Medical Institute, Ithaca, NY, 14853, USA.,Department of Physics & LASSP, Ithaca, NY, 14853, USA
| | - James T Inman
- Howard Hughes Medical Institute, Ithaca, NY, 14853, USA.,Department of Physics & LASSP, Ithaca, NY, 14853, USA
| | - Yifeng Hong
- Department of Electrical and Computer Engineering, Ithaca, NY, 14853, USA
| | | | - Michelle D Wang
- Howard Hughes Medical Institute, Ithaca, NY, 14853, USA. .,Department of Physics & LASSP, Ithaca, NY, 14853, USA.
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A Miniature Optical Force Dual-Axis Accelerometer Based on Laser Diodes and Small Particles Cavities. MICROMACHINES 2021; 12:mi12111375. [PMID: 34832787 PMCID: PMC8620212 DOI: 10.3390/mi12111375] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Accepted: 11/03/2021] [Indexed: 11/16/2022]
Abstract
In recent years, the optical accelerometer based on the optical trapping force effect has gradually attracted the attention of researchers for its high sensitivity and high measurement accuracy. However, due to its large size and the complexity of optical path adjustment, the optical force accelerometers reported are only suitable for the laboratory environment up to now. In this paper, a miniature optical force dual-axis accelerometer based on the miniature optical system and a particles cavity which is prepared by Micro-Electro-Mechanical Systems (MEMS) technology is proposed. The overall system of the miniature optical levitation including the miniature optical system and MEMS particles cavity is a cylindrical structure with a diameter of about 10 mm and a height of 33 mm (Φ 10 mm × 33 mm). Moreover, the size of this accelerometer is 200 mm × 100 mm × 100 mm. Due to the selected light source being a laser diode light source with elliptical distribution, it is sensitive to the external acceleration in both the long axis and the short axis. This accelerometer achieves a measurement range of ±0.17 g-±0.26 g and measurement resolution of 0.49 mg and 1.88 mg. The result shows that the short-term zero-bias stability of the two orthogonal axes of the optical force accelerometer is 4.4 mg and 9.2 mg, respectively. The main conclusion that can be drawn is that this optical force accelerometer could provide an effective solution for measuring acceleration with an optical force effect for compact engineering devices.
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Optical Trapping and Manipulating with a Silica Microring Resonator in a Self-Locked Scheme. MICROMACHINES 2020; 11:mi11020202. [PMID: 32075346 PMCID: PMC7074748 DOI: 10.3390/mi11020202] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/31/2019] [Revised: 02/12/2020] [Accepted: 02/13/2020] [Indexed: 01/09/2023]
Abstract
Based on the gradient force of evanescent waves in silica waveguides and add-drop micro-ring resonators, the optical trapping and manipulation of micro size particles is demonstrated in a self-locked scheme that maintains the on-resonance system even if there is a change in the ambient temperature or environment. The proposed configuration allows the trapping of particles in the high Q resonator without the need for a precise wavelength adjustment of the input signal. On the one hand, a silicon dioxide waveguide having a lower refractive index and relatively larger dimensions facilitates the coupling of the laser with a single-mode fiber. Furthermore, the experimental design of the self-locked scheme reduces the sensitivity of the ring to the environment. This combination can trap the micro size particles with a high stability while manipulating them with high accuracy.
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Badman RP, Ye F, Wang MD. Towards biological applications of nanophotonic tweezers. Curr Opin Chem Biol 2019; 53:158-166. [PMID: 31678712 DOI: 10.1016/j.cbpa.2019.09.008] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Revised: 09/24/2019] [Accepted: 09/27/2019] [Indexed: 02/07/2023]
Abstract
Optical trapping (synonymous with optical tweezers) has become a core biophysical technique widely used for interrogating fundamental biological processes on size scales ranging from the single-molecule to the cellular level. Recent advances in nanotechnology have led to the development of 'nanophotonic tweezers,' an exciting new class of 'on-chip' optical traps. Here, we describe how nanophotonic tweezers are making optical trap technology more broadly accessible and bringing unique biosensing and manipulation capabilities to biological applications of optical trapping.
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Affiliation(s)
- Ryan P Badman
- Department of Physics & LASSP, Cornell University, Ithaca, NY 14853, USA
| | - Fan Ye
- Department of Physics & LASSP, Cornell University, Ithaca, NY 14853, USA; Howard Hughes Medical Institute, Cornell University, Ithaca, NY 14853, USA
| | - Michelle D Wang
- Department of Physics & LASSP, Cornell University, Ithaca, NY 14853, USA; Howard Hughes Medical Institute, Cornell University, Ithaca, NY 14853, USA.
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Badman RP, Ye F, Caravan W, Wang MD. High Trap Stiffness Microcylinders for Nanophotonic Trapping. ACS APPLIED MATERIALS & INTERFACES 2019; 11:25074-25080. [PMID: 31274286 PMCID: PMC6946062 DOI: 10.1021/acsami.9b10041] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Nanophotonic waveguides have enabled on-chip optical trap arrays for high-throughput manipulation and measurements. However, the realization of the full potential of these devices requires trapping enhancement for applications that need large trapping force. Here, we demonstrate a solution via fabrication of high refractive index cylindrical trapping particles. Using two different fabrication processes, a cleaving method and a novel lift-off method, we produced cylindrical silicon nitride (Si3N4) particles and characterized their trapping properties using the recently developed nanophotonic standing-wave array trap (nSWAT) platform. Relative to conventionally used polystyrene microspheres, the fabricated Si3N4 microcylinders attain an approximately 3- to 6-fold trap stiffness enhancement. Furthermore, both fabrication processes permit tunable microcylinder geometry, and the lift-off method also results in ultrasmooth surface termination of the ends of the microcylinders. These combined features make the Si3N4 microcylinders uniquely suited for a broad range of high-throughput, high-force, nanophotonic waveguide-based optical trapping applications.
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Affiliation(s)
- Ryan P. Badman
- Department of Physics - LASSP, Cornell University, Ithaca, New York 14853
| | - Fan Ye
- Department of Physics - LASSP, Cornell University, Ithaca, New York 14853
- Howard Hughes Medical Institute, Cornell University, Ithaca, New York 14853
| | - Wagma Caravan
- Department of Physics - LASSP, Cornell University, Ithaca, New York 14853
- Current address: Department of Chemistry, Adelphi University, Garden City, NY 11530
| | - Michelle D. Wang
- Department of Physics - LASSP, Cornell University, Ithaca, New York 14853
- Howard Hughes Medical Institute, Cornell University, Ithaca, New York 14853
- corresponding author:
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Baker JE, Badman RP, Wang MD. Nanophotonic trapping: precise manipulation and measurement of biomolecular arrays. WILEY INTERDISCIPLINARY REVIEWS-NANOMEDICINE AND NANOBIOTECHNOLOGY 2017; 10. [PMID: 28439980 DOI: 10.1002/wnan.1477] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2017] [Revised: 03/20/2017] [Accepted: 03/22/2017] [Indexed: 12/13/2022]
Abstract
Optical trapping is a powerful and widely used laboratory technique in the biological and materials sciences that enables rapid manipulation and measurement at the nanometer scale. However, expanding the analytical throughput of this technique beyond the serial capabilities of established single-trap microscope-based optical tweezers remains a current goal in the field. In recent years, advances in nanotechnology have been leveraged to create innovative optical trapping methods that increase the number of available optical traps and permit parallel manipulation and measurement of arrays of optically trapped targets. In particular, nanophotonic trapping holds significant promise for integration with other lab-on-a-chip technologies to yield compact, robust analytical devices. In this review, we highlight progress in nanophotonic manipulation and measurement, as well as the potential for implementing these on-chip functionalities in biological research and biomedical applications. WIREs Nanomed Nanobiotechnol 2018, 10:e1477. doi: 10.1002/wnan.1477 This article is categorized under: Nanotechnology Approaches to Biology > Nanoscale Systems in Biology.
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Affiliation(s)
- James E Baker
- Howard Hughes Medical Institute, Cornell University, Ithaca, NY, USA.,Department of Physics - LASSP, Cornell University, Ithaca, NY, USA
| | - Ryan P Badman
- Department of Physics - LASSP, Cornell University, Ithaca, NY, USA
| | - Michelle D Wang
- Howard Hughes Medical Institute, Cornell University, Ithaca, NY, USA.,Department of Physics - LASSP, Cornell University, Ithaca, NY, USA
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