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Pastyrik JD, Firzlaff U. Object specific adaptation in the auditory cortex of bats. J Neurophysiol 2022; 128:556-567. [PMID: 35946795 DOI: 10.1152/jn.00151.2022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
To identify behaviourally relevant sounds is an important function of the auditory system. Echolocating bats have to negotiate a wealth of sounds in the context of navigation and foraging. They must be able to detect relatively rare but behaviourally important echoes and segregate them from a large number of unimportant background echoes. For this, the bat auditory system might rely on neural deviance detection, a process influencing the excitability of a neuron depending on the frequency of occurrence of a stimulus. To investigate neural deviance detection in the auditory cortex (AC) of anaesthetised bats (Phyllostomus discolor), we designed sequences of repetitive naturalistic virtual echoes differing in spectro-temporal envelope, resembling those bats might perceive in their natural environment. In these sequences, one echo (standard) was repeated ten times and another echo (deviant) was presented at the end. Temporal intervals between echoes within the sequences varied. Our results show, that neurons in the AC of the bat P. discolor are sensitive to novel virtual echoes presented at the end of these repetitive sequences: In 49 % (62/126) of cortical neurons, extracellularly recorded responses adapted to the standard echo, but showed a strong response to the finally presented deviant echo. This effect depended strongly on the temporal intervals between echoes, with stronger adaptation at shorter intervals. This type of response behavior might represent a form of neuronal deviance detection in the AC that could help the bats to detect echoes of novel and potentially important objects within a stream of homogeneous background echoes.
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Affiliation(s)
- Jan David Pastyrik
- Chair of Zoology, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Uwe Firzlaff
- Chair of Zoology, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
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2
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Simon R, Bakunowski K, Reyes-Vasques AE, Tschapka M, Knörnschild M, Steckel J, Stowell D. Acoustic traits of bat-pollinated flowers compared to flowers of other pollination syndromes and their echo-based classification using convolutional neural networks. PLoS Comput Biol 2021; 17:e1009706. [PMID: 34914700 PMCID: PMC8718002 DOI: 10.1371/journal.pcbi.1009706] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Revised: 12/30/2021] [Accepted: 12/01/2021] [Indexed: 11/19/2022] Open
Abstract
Bat-pollinated flowers have to attract their pollinators in absence of light and therefore some species developed specialized echoic floral parts. These parts are usually concave shaped and act like acoustic retroreflectors making the flowers acoustically conspicuous to the bats. Acoustic plant specializations only have been described for two bat-pollinated species in the Neotropics and one other bat-dependent plant in South East Asia. However, it remains unclear whether other bat-pollinated plant species also show acoustic adaptations. Moreover, acoustic traits have never been compared between bat-pollinated flowers and flowers belonging to other pollination syndromes. To investigate acoustic traits of bat-pollinated flowers we recorded a dataset of 32320 flower echoes, collected from 168 individual flowers belonging to 12 different species. 6 of these species were pollinated by bats and 6 species were pollinated by insects or hummingbirds. We analyzed the spectral target strength of the flowers and trained a convolutional neural network (CNN) on the spectrograms of the flower echoes. We found that bat-pollinated flowers have a significantly higher echo target strength, independent of their size, and differ in their morphology, specifically in the lower variance of their morphological features. We found that a good classification accuracy by our CNN (up to 84%) can be achieved with only one echo/spectrogram to classify the 12 different plant species, both bat-pollinated and otherwise, with bat-pollinated flowers being easier to classify. The higher classification performance of bat-pollinated flowers can be explained by the lower variance of their morphology.
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Affiliation(s)
- Ralph Simon
- CoSys-Lab, Antwerp University, Antwerp, Belgium
- Nuremberg Zoo, Nuremberg, Germany
- * E-mail:
| | - Karol Bakunowski
- Machine Listening Lab, Centre for Digital Music (C4DM), Queen Mary University of London, United Kingdom
| | | | - Marco Tschapka
- Institute for Evolutionary Ecology and Conservation Genomics, University of Ulm, Ulm, Germany
- Smithsonian Tropical Research Institute, Balboa, Panama
| | - Mirjam Knörnschild
- Smithsonian Tropical Research Institute, Balboa, Panama
- Museum für Naturkunde, Leibniz-Institute for Evolution and Biodiversity Science, Berlin, Germany
| | - Jan Steckel
- CoSys-Lab, Antwerp University, Antwerp, Belgium
| | - Dan Stowell
- Machine Listening Lab, Centre for Digital Music (C4DM), Queen Mary University of London, United Kingdom
- Tilburg University/Naturalis Biodiversity Center, The Netherlands
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3
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Lattenkamp EZ, Hörpel SG, Mengede J, Firzlaff U. A researcher's guide to the comparative assessment of vocal production learning. Philos Trans R Soc Lond B Biol Sci 2021; 376:20200237. [PMID: 34482725 DOI: 10.1098/rstb.2020.0237] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
Vocal production learning (VPL) is the capacity to learn to produce new vocalizations, which is a rare ability in the animal kingdom and thus far has only been identified in a handful of mammalian taxa and three groups of birds. Over the last few decades, approaches to the demonstration of VPL have varied among taxa, sound production systems and functions. These discrepancies strongly impede direct comparisons between studies. In the light of the growing number of experimental studies reporting VPL, the need for comparability is becoming more and more pressing. The comparative evaluation of VPL across studies would be facilitated by unified and generalized reporting standards, which would allow a better positioning of species on any proposed VPL continuum. In this paper, we specifically highlight five factors influencing the comparability of VPL assessments: (i) comparison to an acoustic baseline, (ii) comprehensive reporting of acoustic parameters, (iii) extended reporting of training conditions and durations, (iv) investigating VPL function via behavioural, perception-based experiments and (v) validation of findings on a neuronal level. These guidelines emphasize the importance of comparability between studies in order to unify the field of vocal learning. This article is part of the theme issue 'Vocal learning in animals and humans'.
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Affiliation(s)
- Ella Z Lattenkamp
- Division of Neurobiology, Department of Biology II, LMU Munich, Germany.,Neurogenetics of Vocal Communication Group, Max Planck Institute for Psycholinguistics, Nijmegen, The Netherlands
| | - Stephen G Hörpel
- Neurogenetics of Vocal Communication Group, Max Planck Institute for Psycholinguistics, Nijmegen, The Netherlands.,Department of Animal Sciences, Chair of Zoology, TU Munich, Germany
| | - Janine Mengede
- Neurogenetics of Vocal Communication Group, Max Planck Institute for Psycholinguistics, Nijmegen, The Netherlands
| | - Uwe Firzlaff
- Department of Animal Sciences, Chair of Zoology, TU Munich, Germany
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4
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Hörpel SG, Baier AL, Peremans H, Reijniers J, Wiegrebe L, Firzlaff U. Communication breakdown: Limits of spectro-temporal resolution for the perception of bat communication calls. Sci Rep 2021; 11:13708. [PMID: 34211004 PMCID: PMC8249457 DOI: 10.1038/s41598-021-92842-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Accepted: 06/14/2021] [Indexed: 02/06/2023] Open
Abstract
During vocal communication, the spectro-temporal structure of vocalizations conveys important contextual information. Bats excel in the use of sounds for echolocation by meticulous encoding of signals in the temporal domain. We therefore hypothesized that for social communication as well, bats would excel at detecting minute distortions in the spectro-temporal structure of calls. To test this hypothesis, we systematically introduced spectro-temporal distortion to communication calls of Phyllostomus discolor bats. We broke down each call into windows of the same length and randomized the phase spectrum inside each window. The overall degree of spectro-temporal distortion in communication calls increased with window length. Modelling the bat auditory periphery revealed that cochlear mechanisms allow discrimination of fast spectro-temporal envelopes. We evaluated model predictions with experimental psychophysical and neurophysiological data. We first assessed bats' performance in discriminating original versions of calls from increasingly distorted versions of the same calls. We further examined cortical responses to determine additional specializations for call discrimination at the cortical level. Psychophysical and cortical responses concurred with model predictions, revealing discrimination thresholds in the range of 8-15 ms randomization-window length. Our data suggest that specialized cortical areas are not necessary to impart psychophysical resilience to temporal distortion in communication calls.
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Affiliation(s)
- Stephen Gareth Hörpel
- Chair of Zoology, School of Life Sciences, Technical University of Munich, Liesel-Beckmann-Str. 4, 85354, Freising, Germany.
- Neurogenetics of Vocal Communication Group, Max Planck Institute for Psycholinguistics, Nijmegen, The Netherlands.
| | - A Leonie Baier
- Chair of Zoology, School of Life Sciences, Technical University of Munich, Liesel-Beckmann-Str. 4, 85354, Freising, Germany
- Department Biology II, Ludwig Maximilians University Munich, Großhaderner Strasse 2, 82152, Martinsried, Germany
| | - Herbert Peremans
- Department of Engineering Management, Faculty of Business and Economics, University of Antwerp, 2000, Antwerp, Belgium
| | - Jonas Reijniers
- Department of Engineering Management, Faculty of Business and Economics, University of Antwerp, 2000, Antwerp, Belgium
| | - Lutz Wiegrebe
- Department Biology II, Ludwig Maximilians University Munich, Großhaderner Strasse 2, 82152, Martinsried, Germany
| | - Uwe Firzlaff
- Chair of Zoology, School of Life Sciences, Technical University of Munich, Liesel-Beckmann-Str. 4, 85354, Freising, Germany
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5
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Chitradurga Achutha A, Peremans H, Firzlaff U, Vanderelst D. Efficient encoding of spectrotemporal information for bat echolocation. PLoS Comput Biol 2021; 17:e1009052. [PMID: 34181643 PMCID: PMC8270447 DOI: 10.1371/journal.pcbi.1009052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Revised: 07/09/2021] [Accepted: 05/07/2021] [Indexed: 12/04/2022] Open
Abstract
In most animals, natural stimuli are characterized by a high degree of redundancy, limiting the ensemble of ecologically valid stimuli to a significantly reduced subspace of the representation space. Neural encodings can exploit this redundancy and increase sensing efficiency by generating low-dimensional representations that retain all information essential to support behavior. In this study, we investigate whether such an efficient encoding can be found to support a broad range of echolocation tasks in bats. Starting from an ensemble of echo signals collected with a biomimetic sonar system in natural indoor and outdoor environments, we use independent component analysis to derive a low-dimensional encoding of the output of a cochlear model. We show that this compressive encoding retains all essential information. To this end, we simulate a range of psycho-acoustic experiments with bats. In these simulations, we train a set of neural networks to use the encoded echoes as input while performing the experiments. The results show that the neural networks’ performance is at least as good as that of the bats. We conclude that our results indicate that efficient encoding of echo information is feasible and, given its many advantages, very likely to be employed by bats. Previous studies have demonstrated that low-dimensional encodings allow for task resolution at a relatively high level. In contrast to previous work in this area, we show that high performance can also be achieved when low-dimensional filters are derived from a data set of realistic echo signals, not tailored to specific experimental conditions. We show that complex (and simple) echoes from real environments can be efficiently and effectively represented using a small set of filters. Critically, we show that high performance across a range of tasks can be achieved when low-dimensional filters are derived from a data set of realistic echo signals, not tailored to specific experimental conditions. The redundancy in echoic information opens up the opportunity for efficient encoding, reducing the computational load of echo processing as well as the memory load for storing the information. Therefore, we predict the auditory system of bats to capitalize on this opportunity for efficient coding by implementing filters with spectrotemporal properties akin to those hypothesized here. Indeed, the filters we obtain here are similar to those found in other animals and other sensing capabilities. Our results indicate that bats could exploit the redundancy in sonar signals to implement an efficient neural encoding of the relevant information.
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Affiliation(s)
- Adarsh Chitradurga Achutha
- Mechanical and Materials Engineering, University of Cincinnati, Cincinnati, Ohio, United States of America
| | - Herbert Peremans
- Department of Engineering Management, University of Antwerp, Antwerp, Belgium
| | - Uwe Firzlaff
- Chair of Zoology, School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Dieter Vanderelst
- Department of Biological Sciences, University of Cincinnati, Cincinnati, Ohio, United States of America
- * E-mail:
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Ming C, Haro S, Simmons AM, Simmons JA. A comprehensive computational model of animal biosonar signal processing. PLoS Comput Biol 2021; 17:e1008677. [PMID: 33596199 PMCID: PMC7888678 DOI: 10.1371/journal.pcbi.1008677] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2020] [Accepted: 01/07/2021] [Indexed: 11/23/2022] Open
Abstract
Computational models of animal biosonar seek to identify critical aspects of echo processing responsible for the superior, real-time performance of echolocating bats and dolphins in target tracking and clutter rejection. The Spectrogram Correlation and Transformation (SCAT) model replicates aspects of biosonar imaging in both species by processing wideband biosonar sounds and echoes with auditory mechanisms identified from experiments with bats. The model acquires broadband biosonar broadcasts and echoes, represents them as time-frequency spectrograms using parallel bandpass filters, translates the filtered signals into ten parallel amplitude threshold levels, and then operates on the resulting time-of-occurrence values at each frequency to estimate overall echo range delay. It uses the structure of the echo spectrum by depicting it as a series of local frequency nulls arranged regularly along the frequency axis of the spectrograms after dechirping them relative to the broadcast. Computations take place entirely on the timing of threshold-crossing events for each echo relative to threshold-events for the broadcast. Threshold-crossing times take into account amplitude-latency trading, a physiological feature absent from conventional digital signal processing. Amplitude-latency trading transposes the profile of amplitudes across frequencies into a profile of time-registrations across frequencies. Target shape is extracted from the spacing of the object's individual acoustic reflecting points, or glints, using the mutual interference pattern of peaks and nulls in the echo spectrum. These are merged with the overall range-delay estimate to produce a delay-based reconstruction of the object's distance as well as its glints. Clutter echoes indiscriminately activate multiple parts in the null-detecting system, which then produces the equivalent glint-delay spacings in images, thus blurring the overall echo-delay estimates by adding spurious glint delays to the image. Blurring acts as an anticorrelation process that rejects clutter intrusion into perceptions.
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Affiliation(s)
- Chen Ming
- Department of Neuroscience and Carney Institute for Brain Science, Brown University Providence, United States of America
| | - Stephanie Haro
- Speech and Hearing Biosciences and Technology, Harvard University, Boston, United States of America
| | - Andrea Megela Simmons
- Department of Cognitive, Linguistic and Psychological Sciences and Carney Institute for Brain Science, Brown University Providence, United States of America
| | - James A. Simmons
- Department of Neuroscience and Carney Institute for Brain Science, Brown University Providence, United States of America
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7
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Echolocating bats detect but misperceive a multidimensional incongruent acoustic stimulus. Proc Natl Acad Sci U S A 2020; 117:28475-28484. [PMID: 33106427 DOI: 10.1073/pnas.2005009117] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Coherent perception relies on integrating multiple dimensions of a sensory modality, for example, color and shape in vision. We reveal how different acoustic dimensions, specifically echo intensity and sonar aperture (or width), are important for correct perception by echolocating bats. We flew bats down a corridor blocked by objects with different intensity-aperture combinations. To our surprise, bats crashed straight into large (aperture) walls with weak echo intensity as if they did not exist. The echolocation behavior of the bats indicated that they did detect the wall, suggesting that crashing was not a result of limited sensory sensitivity, but of a perceptual deficit. We systematically manipulated intensity and aperture by changing the materials and width of different reflectors, and we conclude that a coherent echo-based percept is created only when these two acoustic dimensions have certain relations which are typical for objects in nature (e.g., large and intense or small and weak reflectors). Nevertheless, we show that these preferred relations are not innate. We show that young pups are not constrained to these relations and that new intensity-aperture associations can also be learned by adult bats.
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8
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Radtke-Schuller S, Fenzl T, Peremans H, Schuller G, Firzlaff U. Cyto- and myeloarchitectural brain atlas of the pale spear-nosed bat (Phyllostomus discolor) in CT Aided Stereotaxic Coordinates. Brain Struct Funct 2020; 225:2509-2520. [PMID: 32936343 PMCID: PMC7544721 DOI: 10.1007/s00429-020-02138-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2020] [Accepted: 08/29/2020] [Indexed: 12/19/2022]
Abstract
The pale spear-nosed bat Phyllostomus discolor, a microchiropteran bat, is well established as an animal model for research on the auditory system, echolocation and social communication of species-specific vocalizations. We have created a brain atlas of Phyllostomus discolor that provides high-quality histological material for identification of brain structures in reliable stereotaxic coordinates to strengthen neurobiological studies of this key species. The new atlas combines high-resolution images of frontal sections alternately stained for cell bodies (Nissl) and myelinated fibers (Gallyas) at 49 rostrocaudal levels, at intervals of 350 µm. To facilitate comparisons with other species, brain structures were named according to the widely accepted Paxinos nomenclature and previous neuroanatomical studies of other bat species. Outlines of auditory cortical fields, as defined in earlier studies, were mapped onto atlas sections and onto the brain surface, together with the architectonic subdivisions of the neocortex. X-ray computerized tomography (CT) of the bat's head was used to establish the relationship between coordinates of brain structures and the skull. We used profile lines and the occipital crest as skull landmarks to line up skull and brain in standard atlas coordinates. An easily reproducible protocol allows sectioning of experimental brains in the standard frontal plane of the atlas. An electronic version of the atlas plates and supplementary material is available from https://doi.org/10.12751/g-node.8bbcxy.
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Affiliation(s)
- Susanne Radtke-Schuller
- Lehrstuhl für Zoologie, Technical University Munich, Freising, Germany.
- Department of Psychiatry, University of North Carolina At Chapel Hill, Chapel Hill, NC, 27599, USA.
| | - Thomas Fenzl
- Klinikum für Anästhesiologie und Intensivmedizin am Klinikum Rechts der Isar, TU München, Munich, Germany
| | - Herbert Peremans
- Department of Engineering Management, University of Antwerp, Antwerp, Belgium
| | - Gerd Schuller
- Division of Neurobiology, Department Biology II, Ludwig-Maximilians-University Munich, Planegg-Martinsried, Germany
| | - Uwe Firzlaff
- Lehrstuhl für Zoologie, Technical University Munich, Freising, Germany
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9
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Hörpel SG, Firzlaff U. Processing of fast amplitude modulations in bat auditory cortex matches communication call-specific sound features. J Neurophysiol 2019; 121:1501-1512. [PMID: 30785811 DOI: 10.1152/jn.00748.2018] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Bats use a large repertoire of calls for social communication. In the bat Phyllostomus discolor, social communication calls are often characterized by sinusoidal amplitude and frequency modulations with modulation frequencies in the range of 100-130 Hz. However, peaks in mammalian auditory cortical modulation transfer functions are typically limited to modulation frequencies below 100 Hz. We investigated the coding of sinusoidally amplitude modulated sounds in auditory cortical neurons in P. discolor by constructing rate and temporal modulation transfer functions. Neuronal responses to playbacks of various communication calls were additionally recorded and compared with the neurons' responses to sinusoidally amplitude-modulated sounds. Cortical neurons in the posterior dorsal field of the auditory cortex were tuned to unusually high modulation frequencies: rate modulation transfer functions often peaked around 130 Hz (median: 87 Hz), and the median of the highest modulation frequency that evoked significant phase-locking was also 130 Hz. Both values are much higher than reported from the auditory cortex of other mammals, with more than 51% of the units preferring modulation frequencies exceeding 100 Hz. Conspicuously, the fast modulations preferred by the neurons match the fast amplitude and frequency modulations of prosocial, and mostly of aggressive, communication calls in P. discolor. We suggest that the preference for fast amplitude modulations in the P. discolor dorsal auditory cortex serves to reliably encode the fast modulations seen in their communication calls. NEW & NOTEWORTHY Neural processing of temporal sound features is crucial for the analysis of communication calls. In bats, these calls are often characterized by fast temporal envelope modulations. Because auditory cortex neurons typically encode only low modulation frequencies, it is unclear how species-specific vocalizations are cortically processed. We show that auditory cortex neurons in the bat Phyllostomus discolor encode fast temporal envelope modulations. This property improves response specificity to communication calls and thus might support species-specific communication.
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Affiliation(s)
- Stephen Gareth Hörpel
- Chair of Zoology, Department of Animal Sciences, Technical University of Munich , Freising , Germany
| | - Uwe Firzlaff
- Chair of Zoology, Department of Animal Sciences, Technical University of Munich , Freising , Germany
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10
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Baier AL, Wiegrebe L. Flutter sensitivity in FM bats. Part I: delay modulation. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2018; 204:929-939. [PMID: 30244365 PMCID: PMC6208693 DOI: 10.1007/s00359-018-1291-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2018] [Revised: 09/11/2018] [Accepted: 09/16/2018] [Indexed: 11/28/2022]
Abstract
Echolocating bats measure target distance by the time delay between call and echo. Target movement such as the flutter of insect wings induces delay modulations. Perception of delay modulations has been studied extensively in bats, but only concerning how well bats discriminate flutter frequencies, never with regard to flutter magnitude. We used an auditory virtual reality approach to generate changes in echo delay that were independent of call repetition rate, mimicking fluttering insect wings. We show that in the frequency-modulating (FM) bat Phyllostomus discolor, the sensitivity for modulations in echo delay depends on the rate of the modulation, with bats being most sensitive at modulation rates below 20 Hz and above 50 Hz. The very short duration of their calls compels FM bats to evaluate slow modulations (< about 100 Hz) across entire echo sequences. This makes them susceptible to interference between their own call repetition rate and the modulation rate. We propose that this phenomenon constitutes an echo-acoustic wagon-wheel effect. We further demonstrate how at high modulation rates, flutter sensitivity could be rescued by using spectral and temporal cues introduced by Doppler distortions. Thus, Doppler distortions may play a crucial role in flutter sensitivity in the hundreds of FM species worldwide.
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Affiliation(s)
- A Leonie Baier
- Department Biology II, Ludwig Maximilians University Munich, Großhaderner Str. 2, 82152, Martinsried, Germany. .,Acoustic and Functional Ecology Group, Max Planck Institute for Ornithology, Eberhard-Gwinner-Str. 11, 82319, Seewiesen, Germany.
| | - Lutz Wiegrebe
- Department Biology II, Ludwig Maximilians University Munich, Großhaderner Str. 2, 82152, Martinsried, Germany
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11
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Rodenas-Cuadrado P, Chen XS, Wiegrebe L, Firzlaff U, Vernes SC. A novel approach identifies the first transcriptome networks in bats: a new genetic model for vocal communication. BMC Genomics 2015; 16:836. [PMID: 26490347 PMCID: PMC4618519 DOI: 10.1186/s12864-015-2068-1] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2015] [Accepted: 10/13/2015] [Indexed: 12/15/2022] Open
Abstract
BACKGROUND Bats are able to employ an astonishingly complex vocal repertoire for navigating their environment and conveying social information. A handful of species also show evidence for vocal learning, an extremely rare ability shared only with humans and few other animals. However, despite their potential for the study of vocal communication, bats remain severely understudied at a molecular level. To address this fundamental gap we performed the first transcriptome profiling and genetic interrogation of molecular networks in the brain of a highly vocal bat species, Phyllostomus discolor. RESULTS Gene network analysis typically needs large sample sizes for correct clustering, this can be prohibitive where samples are limited, such as in this study. To overcome this, we developed a novel bioinformatics methodology for identifying robust co-expression gene networks using few samples (N=6). Using this approach, we identified tissue-specific functional gene networks from the bat PAG, a brain region fundamental for mammalian vocalisation. The most highly connected network identified represented a cluster of genes involved in glutamatergic synaptic transmission. Glutamatergic receptors play a significant role in vocalisation from the PAG, suggesting that this gene network may be mechanistically important for vocal-motor control in mammals. CONCLUSION We have developed an innovative approach to cluster co-expressing gene networks and show that it is highly effective in detecting robust functional gene networks with limited sample sizes. Moreover, this work represents the first gene network analysis performed in a bat brain and establishes bats as a novel, tractable model system for understanding the genetics of vocal mammalian communication.
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Affiliation(s)
- Pedro Rodenas-Cuadrado
- Max Planck Institute for Psycholinguistics, Wundtlaan 1, Nijmegen, 6525 XD, The Netherlands.
| | - Xiaowei Sylvia Chen
- Max Planck Institute for Psycholinguistics, Wundtlaan 1, Nijmegen, 6525 XD, The Netherlands.
| | - Lutz Wiegrebe
- Ludwig-Maximilians-Universität, Division of Neurobiology, Department Biology II, Großhaderner Straße 2, Planegg-Martinsried, Munich, D-82152, Germany.
| | - Uwe Firzlaff
- Lehrstuhl für Zoologie, TU München, Liesel-Beckmann-Str. 4, Freising-Weihenstephan, Munich, 85350, Germany.
| | - Sonja C Vernes
- Max Planck Institute for Psycholinguistics, Wundtlaan 1, Nijmegen, 6525 XD, The Netherlands. .,Donders Centre for Cognitive Neuroimaging, Kapittelweg 29, Nijmegen, 6525 EN, The Netherlands.
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12
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Hoffmann S, Genzel D, Prosch S, Baier L, Weser S, Wiegrebe L, Firzlaff U. Biosonar navigation above water I: estimating flight height. J Neurophysiol 2014; 113:1135-45. [PMID: 25411456 DOI: 10.1152/jn.00263.2014] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Locomotion and foraging on the wing require precise navigation in more than just the horizontal plane. Navigation in three dimensions and, specifically, precise adjustment of flight height are essential for flying animals. Echolocating bats drink from water surfaces in flight, which requires an exceptionally precise vertical navigation. Here, we exploit this behavior in the bat, Phyllostomus discolor, to understand the biophysical and neural mechanisms that allow for sonar-guided navigation in the vertical plane. In a set of behavioral experiments, we show that for echolocating bats, adjustment of flight height depends on the tragus in their outer ears. Specifically, the tragus imposes elevation-specific spectral interference patterns on the echoes of the bats' sonar emissions. Head-related transfer functions of our bats show that these interference patterns are most conspicuous in the frequency range ∼55 kHz. This conspicuousness is faithfully preserved in the frequency tuning and spatial receptive fields of cortical single and multiunits recorded from anesthetized animals. In addition, we recorded vertical spatiotemporal response maps that describe neural tuning in elevation over time. One class of units that were very sharply tuned to frequencies ∼55 kHz showed unusual spatiotemporal response characteristics with a preference for paired echoes where especially the first echo originates from very low elevations. These behavioral and neural data provide the first insight into biosonar-based processing and perception of acoustic elevation cues that are essential for bats to navigate in three-dimensional space.
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Affiliation(s)
- Susanne Hoffmann
- Department Biology II, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany; Chair of Zoology, Technische Universität München, Freising-Weihenstephan, Germany
| | - Daria Genzel
- Department Biology II, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany
| | - Selina Prosch
- Department Biology II, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany
| | - Leonie Baier
- Max Planck Research Group Sensory Ecology, Max Planck Institute for Ornithology, Seewiesen, Germany; and
| | - Sabrina Weser
- Department Biology II, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany
| | - Lutz Wiegrebe
- Department Biology II, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany; Max Planck Research Group Sensory Ecology, Max Planck Institute for Ornithology, Seewiesen, Germany; and
| | - Uwe Firzlaff
- Chair of Zoology, Technische Universität München, Freising-Weihenstephan, Germany
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13
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Hoffmann S, Warmbold A, Wiegrebe L, Firzlaff U. Spatiotemporal contrast enhancement and feature extraction in the bat auditory midbrain and cortex. J Neurophysiol 2013; 110:1257-68. [PMID: 23785132 DOI: 10.1152/jn.00226.2013] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Navigating on the wing in complete darkness is a challenging task for echolocating bats. It requires the detailed analysis of spatial and temporal information gained through echolocation. Thus neural encoding of spatiotemporal echo information is a major function in the bat auditory system. In this study we presented echoes in virtual acoustic space and used a reverse-correlation technique to investigate the spatiotemporal response characteristics of units in the inferior colliculus (IC) and the auditory cortex (AC) of the bat Phyllostomus discolor. Spatiotemporal response maps (STRMs) of IC units revealed an organization of suppressive and excitatory regions that provided pronounced contrast enhancement along both the time and azimuth axes. Most IC units showed either spatially centralized short-latency excitation spatiotemporally imbedded in strong suppression, or the opposite, i.e., central short-latency suppression imbedded in excitation. This complementary arrangement of excitation and suppression was very rarely seen in AC units. In contrast, STRMs in the AC revealed much less suppression, sharper spatiotemporal tuning, and often a special spatiotemporal arrangement of two excitatory regions. Temporal separation of excitatory regions ranged up to 25 ms and was thus in the range of temporal delays occurring in target ranging in bats in a natural situation. Our data indicate that spatiotemporal processing of echo information in the bat auditory midbrain and cortex serves very different purposes: Whereas the spatiotemporal contrast enhancement provided by the IC contributes to echo-feature extraction, the AC reflects the result of this processing in terms of a high selectivity and task-oriented recombination of the extracted features.
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Affiliation(s)
- Susanne Hoffmann
- Division of Neurobiology, Department of Biology II, Ludwig-Maximilians-University Munich, Planegg-Martinsried, Germany; and
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14
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Heinrich M, Wiegrebe L. Size constancy in bat biosonar? Perceptual interaction of object aperture and distance. PLoS One 2013; 8:e61577. [PMID: 23630598 PMCID: PMC3632596 DOI: 10.1371/journal.pone.0061577] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2012] [Accepted: 03/11/2013] [Indexed: 11/19/2022] Open
Abstract
Perception and encoding of object size is an important feature of sensory systems. In the visual system object size is encoded by the visual angle (visual aperture) on the retina, but the aperture depends on the distance of the object. As object distance is not unambiguously encoded in the visual system, higher computational mechanisms are needed. This phenomenon is termed "size constancy". It is assumed to reflect an automatic re-scaling of visual aperture with perceived object distance. Recently, it was found that in echolocating bats, the 'sonar aperture', i.e., the range of angles from which sound is reflected from an object back to the bat, is unambiguously perceived and neurally encoded. Moreover, it is well known that object distance is accurately perceived and explicitly encoded in bat sonar. Here, we addressed size constancy in bat biosonar, recruiting virtual-object techniques. Bats of the species Phyllostomus discolor learned to discriminate two simple virtual objects that only differed in sonar aperture. Upon successful discrimination, test trials were randomly interspersed using virtual objects that differed in both aperture and distance. It was tested whether the bats spontaneously assigned absolute width information to these objects by combining distance and aperture. The results showed that while the isolated perceptual cues encoding object width, aperture, and distance were all perceptually well resolved by the bats, the animals did not assign absolute width information to the test objects. This lack of sonar size constancy may result from the bats relying on different modalities to extract size information at different distances. Alternatively, it is conceivable that familiarity with a behaviorally relevant, conspicuous object is required for sonar size constancy, as it has been argued for visual size constancy. Based on the current data, it appears that size constancy is not necessarily an essential feature of sonar perception in bats.
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Affiliation(s)
- Melina Heinrich
- Department Biology II, Ludwig-Maximilians University Munich, Bavaria, Germany
- Graduate School of Systemic Neurosciences, Ludwig-Maximilians University Munich, Bavaria, Germany
| | - Lutz Wiegrebe
- Department Biology II, Ludwig-Maximilians University Munich, Bavaria, Germany
- Graduate School of Systemic Neurosciences, Ludwig-Maximilians University Munich, Bavaria, Germany
- Sensory Ecology Group, Max-Planck Institute for Ornithology, Seewiesen, Germany
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15
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Size does not matter: size-invariant echo-acoustic object classification. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2012. [DOI: 10.1007/s00359-012-0777-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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16
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Genzel D, Geberl C, Dera T, Wiegrebe L. Coordination of bat sonar activity and flight for the exploration of three-dimensional objects. J Exp Biol 2012; 215:2226-35. [DOI: 10.1242/jeb.064535] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
SUMMARY
The unique combination of flight and echolocation has opened the nocturnal air space as a rich ecological niche for bats. By analysing echoes of their sonar emissions, bats discriminate and recognize three-dimensional (3-D) objects. However, in contrast to vision, the 3-D information that can be gained by ensonifying an object from only one observation angle is sparse. To date, it is unclear how bats synchronize echolocation and flight activity to explore the 3-D shape of ensonified objects. We have devised an experimental design that allows creating 3-D virtual echo-acoustic objects by generating in real-time echoes from the bat's emissions that depend on the bat's position relative to the virtual object. Bats were trained to evaluate these 3-D virtual objects differing in their azimuthal variation of either echo amplitude or spectral composition. The data show that through a very effective coordination of sonar and flight activity, bats analyse an azimuthal variation of echo amplitude with a resolution of approximately 16 dB and a variation of echo centre frequency of approximately 19%. Control experiments show that the bats can detect not only these variations but also perturbations in the spatial arrangement of these variations. The current experimental paradigm shows that echolocating bats assemble echo-acoustic object information – acquired sequentially in flight – to reconstruct the 3-D shape of the ensonified object. Unlike previous approaches, the recruitment of virtual objects allows for a direct quantification of this reconstruction success in a highly controlled experimental approach.
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Affiliation(s)
- Daria Genzel
- Division of Neurobiology, Department of Biology II, Ludwig-Maximilians-Universitaet Munich, Großhaderner Str. 2-4, D-82152 Martinsried-Planegg, Germany
| | - Cornelia Geberl
- Division of Neurobiology, Department of Biology II, Ludwig-Maximilians-Universitaet Munich, Großhaderner Str. 2-4, D-82152 Martinsried-Planegg, Germany
| | - Thomas Dera
- Department of Neurology, University of Munich Hospital, Munich, Marchioninistr. 23, D-81377 Munich, Germany
| | - Lutz Wiegrebe
- Division of Neurobiology, Department of Biology II, Ludwig-Maximilians-Universitaet Munich, Großhaderner Str. 2-4, D-82152 Martinsried-Planegg, Germany
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17
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Abstract
As opposed to visual imaging, biosonar imaging of spatial object properties represents a challenge for the auditory system because its sensory epithelium is not arranged along space axes. For echolocating bats, object width is encoded by the amplitude of its echo (echo intensity) but also by the naturally covarying spread of angles of incidence from which the echoes impinge on the bat's ears (sonar aperture). It is unclear whether bats use the echo intensity and/or the sonar aperture to estimate an object's width. We addressed this question in a combined psychophysical and electrophysiological approach. In three virtual-object playback experiments, bats of the species Phyllostomus discolor had to discriminate simple reflections of their own echolocation calls differing in echo intensity, sonar aperture, or both. Discrimination performance for objects with physically correct covariation of sonar aperture and echo intensity ("object width") did not differ from discrimination performances when only the sonar aperture was varied. Thus, the bats were able to detect changes in object width in the absence of intensity cues. The psychophysical results are reflected in the responses of a population of units in the auditory midbrain and cortex that responded strongest to echoes from objects with a specific sonar aperture, regardless of variations in echo intensity. Neurometric functions obtained from cortical units encoding the sonar aperture are sufficient to explain the behavioral performance of the bats. These current data show that the sonar aperture is a behaviorally relevant and reliably encoded cue for object size in bat sonar.
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18
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Adaptive behavior for texture discrimination by the free-flying big brown bat, Eptesicus fuscus. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2011; 197:491-503. [PMID: 21246202 DOI: 10.1007/s00359-010-0621-6] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2010] [Revised: 12/23/2010] [Accepted: 12/25/2010] [Indexed: 10/18/2022]
Abstract
This study examined behavioral strategies for texture discrimination by echolocation in free-flying bats. Big brown bats, Eptesicus fuscus, were trained to discriminate a smooth 16 mm diameter object (S+) from a size-matched textured object (S-), both of which were tethered in random locations in a flight room. The bat's three-dimensional flight path was reconstructed using stereo images from high-speed video recordings, and the bat's sonar vocalizations were recorded for each trial and analyzed off-line. A microphone array permitted reconstruction of the sonar beam pattern, allowing us to study the bat's directional gaze and inspection of the objects. Bats learned the discrimination, but performance varied with S-. In acoustic studies of the objects, the S+ and S- stimuli were ensonified with frequency-modulated sonar pulses. Mean intensity differences between S+ and S- were within 4 dB. Performance data, combined with analyses of echo recordings, suggest that the big brown bat listens to changes in sound spectra from echo to echo to discriminate between objects. Bats adapted their sonar calls as they inspected the stimuli, and their sonar behavior resembled that of animals foraging for insects. Analysis of sonar beam-directing behavior in certain trials clearly showed that the bat sequentially inspected S+ and S-.
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19
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O'Connor KN, Yin P, Petkov CI, Sutter ML. Complex spectral interactions encoded by auditory cortical neurons: relationship between bandwidth and pattern. Front Syst Neurosci 2010; 4:145. [PMID: 21152347 PMCID: PMC2998047 DOI: 10.3389/fnsys.2010.00145] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2010] [Accepted: 09/09/2010] [Indexed: 11/13/2022] Open
Abstract
The focus of most research on auditory cortical neurons has concerned the effects of rather simple stimuli, such as pure tones or broad-band noise, or the modulation of a single acoustic parameter. Extending these findings to feature coding in more complex stimuli such as natural sounds may be difficult, however. Generalizing results from the simple to more complex case may be complicated by non-linear interactions occurring between multiple, simultaneously varying acoustic parameters in complex sounds. To examine this issue in the frequency domain, we performed a parametric study of the effects of two global features, spectral pattern (here ripple frequency) and bandwidth, on primary auditory (A1) neurons in awake macaques. Most neurons were tuned for one or both variables and most also displayed an interaction between bandwidth and pattern implying that their effects were conditional or interdependent. A spectral linear filter model was able to qualitatively reproduce the basic effects and interactions, indicating that a simple neural mechanism may be able to account for these interdependencies. Our results suggest that the behavior of most A1 neurons is likely to depend on multiple parameters, and so most are unlikely to respond independently or invariantly to specific acoustic features.
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Affiliation(s)
- Kevin N O'Connor
- Center for Neuroscience, University of California Davis Davis, CA, USA
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20
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Yovel Y, Franz MO, Stilz P, Schnitzler HU. Complex echo classification by echo-locating bats: a review. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2010; 197:475-90. [PMID: 20848111 DOI: 10.1007/s00359-010-0584-7] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2010] [Revised: 08/11/2010] [Accepted: 08/28/2010] [Indexed: 11/29/2022]
Abstract
Echo-locating bats constantly emit ultrasonic pulses and analyze the returning echoes to detect, localize, and classify objects in their surroundings. Echo classification is essential for bats' everyday life; for instance, it enables bats to use acoustical landmarks for navigation and to recognize food sources from other objects. Most of the research of echo based object classification in echo-locating bats was done in the context of simple artificial objects. These objects might represent prey, flower, or fruit and are characterized by simple echoes with a single up to several reflectors. Bats, however, must also be able to use echoes that return from complex structures such as plants or other types of background. Such echoes are characterized by superpositions of many reflections that can only be described using a stochastic statistical approach. Scientists have only lately started to address the issue of complex echo classification by echo-locating bats. Some behavioral evidence showing that bats can classify complex echoes has been accumulated and several hypotheses have been suggested as to how they do so. Here, we present a first review of this data. We raise some hypotheses regarding possible interpretations of the data and point out necessary future directions that should be pursued.
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Affiliation(s)
- Yossi Yovel
- Department of Neurobiology, Weizmann Institute of Science, Rehovot, Israel.
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21
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Goerlitz HR, Geberl C, Wiegrebe L. Sonar detection of jittering real targets in a free-flying bat. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2010; 128:1467-1475. [PMID: 20815481 DOI: 10.1121/1.3445784] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
The auditory system measures time with exceptional precision. Echolocating bats evaluate the time delay between call and echo to measure object range. An extreme and disputed result on ranging acuity was found in the virtual delay jitter experiments. In these studies, echoes with alternating delays were played back to bats, which detected a jitter down to 10 ns, corresponding to a ranging acuity of 1.7 microm. The current study was designed to measure the ranging acuity of the nectarivorous bat Glossophaga soricina under semi-natural conditions. Three free-flying bats were trained to discriminate between a stationary loudspeaker membrane and a membrane sinusoidally vibrating at 10 Hz. At detection threshold, the average peak-to-peak displacement of the vibrating membrane was 13 mm, corresponding to an echo delay jitter of 75 micros. The perceived jitter from call to call, which depends on the pulse interval and the call emission time relative to the membrane phase, was simulated for comparison with the virtual jitter experiments. This call-to-call jitter was between 20 to 25 micros (ca. 4 mm ranging acuity). These thresholds between 20 and 75 micros (4-13 mm) fall within both ecologically and physiologically plausible ranges, allowing for sufficiently precise navigation and foraging.
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Affiliation(s)
- Holger R Goerlitz
- Department of Biology II, Neurobiology, Ludwig-Maximilians-University Munich, Grosshadernerstrasse 2, 82152 Martinsried, Germany.
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22
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von der Emde G, Behr K, Bouton B, Engelmann J, Fetz S, Folde C. 3-Dimensional Scene Perception during Active Electrolocation in a Weakly Electric Pulse Fish. Front Behav Neurosci 2010; 4:26. [PMID: 20577635 PMCID: PMC2889722 DOI: 10.3389/fnbeh.2010.00026] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2010] [Accepted: 05/04/2010] [Indexed: 11/17/2022] Open
Abstract
Weakly electric fish use active electrolocation for object detection and orientation in their environment even in complete darkness. The African mormyrid Gnathonemus petersii can detect object parameters, such as material, size, shape, and distance. Here, we tested whether individuals of this species can learn to identify 3-dimensional objects independently of the training conditions and independently of the object's position in space (rotation-invariance; size-constancy). Individual G. petersii were trained in a two-alternative forced-choice procedure to electrically discriminate between a 3-dimensional object (S+) and several alternative objects (S−). Fish were then tested whether they could identify the S+ among novel objects and whether single components of S+ were sufficient for recognition. Size-constancy was investigated by presenting the S+ together with a larger version at different distances. Rotation-invariance was tested by rotating S+ and/or S− in 3D. Our results show that electrolocating G. petersii could (1) recognize an object independently of the S− used during training. When only single components of a complex S+ were offered, recognition of S+ was more or less affected depending on which part was used. (2) Object-size was detected independently of object distance, i.e. fish showed size-constancy. (3) The majority of the fishes tested recognized their S+ even if it was rotated in space, i.e. these fishes showed rotation-invariance. (4) Object recognition was restricted to the near field around the fish and failed when objects were moved more than about 4 cm away from the animals. Our results indicate that even in complete darkness our G. petersii were capable of complex 3-dimensional scene perception using active electrolocation.
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Affiliation(s)
- Gerhard von der Emde
- Neuroethology/Sensory Ecology, Institute of Zoology, University of Bonn Bonn, Germany
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23
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Reijniers J, Peremans H. On population encoding and decoding of auditory information for bat echolocation. BIOLOGICAL CYBERNETICS 2010; 102:311-326. [PMID: 20204397 DOI: 10.1007/s00422-010-0368-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2009] [Accepted: 02/03/2010] [Indexed: 05/28/2023]
Abstract
In this article, we study the neural encoding of acoustic information for FM-bats (such as Eptesicus fuscus) in simulation. In echolocation research, the frequency-time sound representation as expressed by the spectrogram is often considered as input. The rationale behind this is that a similar representation is present in the cochlea, i.e. the receptor potential of the inner hair cells (IHC) along the length of the cochlea, and hence similar acoustic information is relayed to the brain. In this article, we study to what extent the latter assumption is true. The receptor potential is converted into neural activity of the synapting auditory nerve cells (ANC), and information might be lost in this conversion process. Especially for FM-bats, this information transmission is not trivial: in contrast to other mammals, they detect short transient signals, and consequently neural activity can only be integrated over very limited time intervals. To quantify the amount of information transmitted we design a neural network-based algorithm to reconstruct the IHC receptor potentials from the spiking activity of the synapting auditory neurons. Both the receptor potential and the resulting neural activity are simulated using Meddis' peripheral model. Comparing the reconstruction to the IHC receptor potential, we quantify the information transmission of the bat hearing system and investigate how this depends on the intensity of the incoming signal, the distribution of auditory neurons, and previous masking stimulation (adaptation). In addition, we show how this approach allows to inspect which spectral features survive neural encoding and hence can be relevant for echolocation.
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Affiliation(s)
- Jonas Reijniers
- Active Perception Laboratory, University of Antwerp, 2000, Antwerp, Belgium.
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24
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Perception and neural representation of size-variant human vowels in the Mongolian gerbil (Meriones unguiculatus). Hear Res 2009; 261:1-8. [PMID: 20004713 DOI: 10.1016/j.heares.2009.12.016] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/02/2009] [Revised: 12/04/2009] [Accepted: 12/04/2009] [Indexed: 11/23/2022]
Abstract
Humans reliably recognize spoken vowels despite the variability of the sounds caused by the across-subject variability of the speakers' vocal tract. The vocal tract serves as a resonator which imprints a spectral envelope onto the sounds generated by the vocal folds. This spectral envelope contains not only information about the type of vocalization but also about the size of the speaker: the larger the speaker, the lower the formant frequencies of the spoken vowels. In a combined psychophysical and electrophysiological study in the Mongolian gerbil (Meriones unguiculatus), we investigated the perception and neural representation of human vowels spoken by speakers of different sizes. Gerbils trained to discriminate two standard vowels, correctly assigned vowels spoken from different-sized human speakers. Complementary electrophysiological recordings from neurons in the auditory brainstem, midbrain, and primary auditory cortex show that the auditory brainstem retains a truthful representation of the frequency content of the presented vowel sounds. A small percentage of neurons in the midbrain and auditory cortex, however, showed selectivity for a certain vowel type or vocal tract length which is not related to the pure-tone, frequency response area, indicative of a preprocessing stage for auditory segregation of size and structure information.
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25
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Hoffmann S, Firzlaff U, Radtke-Schuller S, Schwellnus B, Schuller G. The auditory cortex of the bat Phyllostomus discolor: Localization and organization of basic response properties. BMC Neurosci 2008; 9:65. [PMID: 18625034 PMCID: PMC2483289 DOI: 10.1186/1471-2202-9-65] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2008] [Accepted: 07/14/2008] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The mammalian auditory cortex can be subdivided into various fields characterized by neurophysiological and neuroarchitectural properties and by connections with different nuclei of the thalamus. Besides the primary auditory cortex, echolocating bats have cortical fields for the processing of temporal and spectral features of the echolocation pulses. This paper reports on location, neuroarchitecture and basic functional organization of the auditory cortex of the microchiropteran bat Phyllostomus discolor (family: Phyllostomidae). RESULTS The auditory cortical area of P. discolor is located at parieto-temporal portions of the neocortex. It covers a rostro-caudal range of about 4800 mum and a medio-lateral distance of about 7000 mum on the flattened cortical surface. The auditory cortices of ten adult P. discolor were electrophysiologically mapped in detail. Responses of 849 units (single neurons and neuronal clusters up to three neurons) to pure tone stimulation were recorded extracellularly. Cortical units were characterized and classified depending on their response properties such as best frequency, auditory threshold, first spike latency, response duration, width and shape of the frequency response area and binaural interactions. Based on neurophysiological and neuroanatomical criteria, the auditory cortex of P. discolor could be subdivided into anterior and posterior ventral fields and anterior and posterior dorsal fields. The representation of response properties within the different auditory cortical fields was analyzed in detail. The two ventral fields were distinguished by their tonotopic organization with opposing frequency gradients. The dorsal cortical fields were not tonotopically organized but contained neurons that were responsive to high frequencies only. CONCLUSION The auditory cortex of P. discolor resembles the auditory cortex of other phyllostomid bats in size and basic functional organization. The tonotopically organized posterior ventral field might represent the primary auditory cortex and the tonotopically organized anterior ventral field seems to be similar to the anterior auditory field of other mammals. As most energy of the echolocation pulse of P. discolor is contained in the high-frequency range, the non-tonotopically organized high-frequency dorsal region seems to be particularly important for echolocation.
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Affiliation(s)
- Susanne Hoffmann
- Department Biology II, Ludwig-Maximilians-University Munich, Grosshaderner Strasse 2, 82152 Planegg-Martinsried, Germany.
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26
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Ulanovsky N, Moss CF. What the bat's voice tells the bat's brain. Proc Natl Acad Sci U S A 2008; 105:8491-8. [PMID: 18562301 PMCID: PMC2438418 DOI: 10.1073/pnas.0703550105] [Citation(s) in RCA: 117] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2007] [Indexed: 11/18/2022] Open
Abstract
For over half a century, the echolocating bat has served as a valuable model in neuroscience to elucidate mechanisms of auditory processing and adaptive behavior in biological sonar. Our article emphasizes the importance of the bat's vocal-motor system to spatial orientation by sonar, and we present this view in the context of three problems that the echolocating bat must solve: (i) auditory scene analysis, (ii) sensorimotor transformations, and (iii) spatial memory and navigation. We summarize our research findings from behavioral studies of echolocating bats engaged in natural tasks and from neurophysiological studies of the bat superior colliculus and hippocampus, brain structures implicated in sensorimotor integration, orientation, and spatial memory. Our perspective is that studies of neural activity in freely vocalizing bats engaged in natural behaviors will prove essential to advancing a deeper understanding of the mechanisms underlying perception and memory in mammals.
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Affiliation(s)
- Nachum Ulanovsky
- *Department of Neurobiology, Weizmann Institute of Science, Rehovot 76100, Israel; and
| | - Cynthia F. Moss
- Department of Psychology and Institute for Systems Research, Program in Neuroscience and Cognitive Science, University of Maryland, College Park, MD 20742
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27
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Wiegrebe L. An autocorrelation model of bat sonar. BIOLOGICAL CYBERNETICS 2008; 98:587-595. [PMID: 18491168 DOI: 10.1007/s00422-008-0216-2] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2007] [Accepted: 01/21/2008] [Indexed: 05/26/2023]
Abstract
Their sonar system allows echolocating bats to navigate with high skill through a complex, three- dimensional environment at high speed and low light. The auditory analysis of the echoes of their ultrasonic sounds requires a detailed comparison of the emission and echoes. Here an auditory model of bat sonar is introduced and evaluated against a set of psychophysical phantom-target, echo-acoustic experiments. The model consists of a relatively detailed simulation of auditory peripheral processing in the bat, Phyllostomus discolor, followed by a functional module consisting of a strobed, normalised, autocorrelation in each frequency channel. The model output is accumulated in a sonar image buffer. The model evaluation is based on the comparison of the image-buffer contents generated in individually simulated psychophysical trials. The model provides reasonably good predictions for both temporal and spectral behavioural sonar processing in terms of sonar delay-, roughness, and phase sensitivity and in terms of sensitivity to the temporal separations in two-front targets and the classification of spectrally divergent phantom targets.
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Affiliation(s)
- Lutz Wiegrebe
- Biozentrum, Ludwig-Maximilians-Universität München, München, Germany.
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28
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Sadagopan S, Wang X. Level invariant representation of sounds by populations of neurons in primary auditory cortex. J Neurosci 2008; 28:3415-26. [PMID: 18367608 PMCID: PMC6670591 DOI: 10.1523/jneurosci.2743-07.2008] [Citation(s) in RCA: 115] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2007] [Revised: 02/20/2008] [Accepted: 02/20/2008] [Indexed: 11/21/2022] Open
Abstract
A fundamental feature of auditory perception is the constancy of sound recognition over a large range of intensities. Although this invariance has been described in behavioral studies, the underlying neural mechanism is essentially unknown. Here we show a putative level-invariant representation of sounds by populations of neurons in primary auditory cortex (A1) that may provide a neural basis for the behavioral observations. Previous studies reported that pure-tone frequency tuning of most A1 neurons widens with increasing sound level. In sharp contrast, we found that a large proportion of neurons in A1 of awake marmosets were narrowly and separably tuned to both frequency and sound level. Tuning characteristics and firing rates of the neural population were preserved across all tested sound levels. These response properties lead to a level-invariant representation of sounds over the population of A1 neurons. Such a representation is an important step for robust feature recognition in natural environments.
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Affiliation(s)
- Srivatsun Sadagopan
- Laboratory of Auditory Neurophysiology, Departments of Neuroscience and Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205
| | - Xiaoqin Wang
- Laboratory of Auditory Neurophysiology, Departments of Neuroscience and Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205
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Yovel Y, Franz MO, Stilz P, Schnitzler HU. Plant classification from bat-like echolocation signals. PLoS Comput Biol 2008; 4:e1000032. [PMID: 18369425 PMCID: PMC2267002 DOI: 10.1371/journal.pcbi.1000032] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2007] [Accepted: 02/11/2008] [Indexed: 11/19/2022] Open
Abstract
Classification of plants according to their echoes is an elementary component of bat behavior that plays an important role in spatial orientation and food acquisition. Vegetation echoes are, however, highly complex stochastic signals: from an acoustical point of view, a plant can be thought of as a three-dimensional array of leaves reflecting the emitted bat call. The received echo is therefore a superposition of many reflections. In this work we suggest that the classification of these echoes might not be such a troublesome routine for bats as formerly thought. We present a rather simple approach to classifying signals from a large database of plant echoes that were created by ensonifying plants with a frequency-modulated bat-like ultrasonic pulse. Our algorithm uses the spectrogram of a single echo from which it only uses features that are undoubtedly accessible to bats. We used a standard machine learning algorithm (SVM) to automatically extract suitable linear combinations of time and frequency cues from the spectrograms such that classification with high accuracy is enabled. This demonstrates that ultrasonic echoes are highly informative about the species membership of an ensonified plant, and that this information can be extracted with rather simple, biologically plausible analysis. Thus, our findings provide a new explanatory basis for the poorly understood observed abilities of bats in classifying vegetation and other complex objects. Bats are able to classify plants using echolocation. They emit ultrasonic signals and can recognize the plant according to the echo returning from it. This ability assists them in many of their daily activities, like finding food sources associated with certain plants or using landmarks for navigation or homing. The echoes created by plants are highly complex signals, combining together all the reflections from the many leaves that a plant contains. Classifying plants or other complex objects is therefore considered a troublesome task and we are far from understanding how bats do it. In this work, we suggest a simple algorithm for classifying plants according to their echoes. Our algorithm is able to classify with high accuracy plant echoes created by a sonar head that simulates a typical frequency-modulated bat's emitting receiving parameters. Our results suggest that plant classification might be easier than formerly considered. It gives us some hints as to which features might be most suitable for the bats, and it opens possibilities for future behavioral experiments to compare its performance with that of the bats.
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Affiliation(s)
- Yossi Yovel
- Animal Physiology, Zoological Institute, University of Tuebingen, Tuebingen, Germany
- * E-mail:
| | - Matthias Otto Franz
- Max-Planck-Institute for Biological Cybernetics, Tuebingen, Germany
- University of Applied Sciences, Konstanz, Germany
| | - Peter Stilz
- Animal Physiology, Zoological Institute, University of Tuebingen, Tuebingen, Germany
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Firzlaff U, Schuller G. Cortical responses to object size-dependent spectral interference patterns in echolocating bats. Eur J Neurosci 2008; 26:2747-55. [PMID: 18001272 DOI: 10.1111/j.1460-9568.2007.05930.x] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Echolocating bats can recognize 3-D objects exclusively through the analysis of the reflections of their ultrasonic emissions. For objects of small size, the spectral interference pattern of the acoustic echoes encodes information about the structure of an object. For some naturally occurring objects such as, e.g., flowers, the interference pattern as well as the echo amplitude can regularly change with the object's size, and bats should be able to compensate for both of these changes for reliable, size-invariant object recognition. In this study, electrophysiological responses of units in the auditory cortex of the bat Phyllostomus discolor were investigated using extracellular recording techniques. Acoustical stimuli consisted of echoes of virtual two-front objects that varied in size. Thus, the echoes changed systematically in amplitude and spectral envelope pattern. Whereas 30% of units simply encoded echo loudness, a considerable number of units (20%) encoded a specific spectral envelope shape independent of stimulus amplitude. In addition, a small number of cortical units (3%) were found that showed response-invariance for a covariation of echo amplitude and echo spectral envelope. The response of these two classes of units could not be simply predicted from the excitatory frequency response areas. The results show that units in the bat auditory cortex exist that might serve for the recognition of characteristic object-specific spectral echo patterns created by, e.g., flowers or other objects independent of object size or echo amplitude.
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Affiliation(s)
- Uwe Firzlaff
- Department Biologie II, Ludwig-Maximilians-Universität München, Grosshadernerstr. 2, D-82152 Planegg-Martinsried, Germany.
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Hoffmann S, Baier L, Borina F, Schuller G, Wiegrebe L, Firzlaff U. Psychophysical and neurophysiological hearing thresholds in the bat Phyllostomus discolor. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2007; 194:39-47. [DOI: 10.1007/s00359-007-0288-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2007] [Revised: 10/08/2007] [Accepted: 10/27/2007] [Indexed: 10/22/2022]
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