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de Souza-Guerreiro TC, Huan Bacellar L, da Costa TS, Edwards CLA, Tasic L, Asally M. Membrane potential dynamics unveil the promise of bioelectrical antimicrobial susceptibility Testing (BeAST) for anti-fungal screening. mBio 2024; 15:e0130224. [PMID: 39041802 PMCID: PMC11323469 DOI: 10.1128/mbio.01302-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Accepted: 06/30/2024] [Indexed: 07/24/2024] Open
Abstract
Membrane potential is a useful marker for antimicrobial susceptibility testing (AST) due to its fundamental roles in cell function. However, the difficulties associated with measuring the membrane potential in microbes restrict its broad application. In this study, we present bioelectrical AST (BeAST) using the model fungus Saccharomyces cerevisiae. Using fluorescent indicators [DiBAC4(3), ThT, and TMRM], we measured plasma and mitochondrial membrane-potential dynamics upon electric stimulation. We find that a 2.5 second electric stimulation induces hyperpolarization of plasma membrane lasting 20 minutes in vital S. cerevisiae, but depolarization in inhibited cells. The numerical simulation of FitzHugh-Nagumo model successfully recapitulates vitality-dependent dynamics. The model also suggests that the magnitude of plasma-membrane potential dynamics (PMD) correlates with the degree of inhibition. To test this prediction and to examine if BeAST can be used for assessing novel anti-fungal compounds, we treat cells with biogenic silver nanoparticles (bioAgNPs) synthesized using orange fruit flavonoids and Fusarium oxysporum. Comparing BeAST with optical density assay alongside various stressors, we show that PMD correlates with the magnitude of growth inhibitions. These results suggest that BeAST holds promise for screening anti-fungal compounds, offering a valuable approach to tackling antimicrobial resistance. IMPORTANCE Rapid assessment of the efficacy of antimicrobials is important for optimizing treatments, avoiding misuse and facilitating the screening of new antimicrobials. The need for rapid antimicrobial susceptibility testing (AST) is growing with the rise of antimicrobial resistance. Here, we present bioelectrical AST (BeAST). Combining time-lapse microscopy and mathematical modeling, we show that electrically induced membrane potential dynamics of yeast cells correspond to the strength of growth inhibition. Furthermore, we demonstrate the utility of BeAST for assessing antimicrobial activities of novel compounds using biogenic silver nanoparticles.
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Affiliation(s)
- Tailise Carolina de Souza-Guerreiro
- School of Life Sciences, University of Warwick, Coventry, United Kingdom
- Warwick Integrative Synthetic Biology Centre, University of Warwick, Coventry, United Kingdom
| | - Letícia Huan Bacellar
- Institute of Chemistry, Biological Chemistry Laboratory, University of Campinas, Campinas, Brazil
| | - Thyerre Santana da Costa
- Institute of Chemistry, Biological Chemistry Laboratory, University of Campinas, Campinas, Brazil
| | | | - Ljubica Tasic
- Institute of Chemistry, Biological Chemistry Laboratory, University of Campinas, Campinas, Brazil
| | - Munehiro Asally
- School of Life Sciences, University of Warwick, Coventry, United Kingdom
- Warwick Integrative Synthetic Biology Centre, University of Warwick, Coventry, United Kingdom
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2
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Fukasawa Y, Akai D, Ushio M, Takehi T. Electrical potentials in the ectomycorrhizal fungus Laccaria bicolor after a rainfall event. FUNGAL ECOL 2023. [DOI: 10.1016/j.funeco.2023.101229] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/14/2023]
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3
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Limapichat W, Pornthanakasem W, Satitthammachart C, Chitnumsub P, Leartsakulpanich U. Real-time detection of changes in yeast plasma membrane potential using genetically encoded voltage indicator proteins. FEMS Yeast Res 2020; 20:5874255. [PMID: 32691845 DOI: 10.1093/femsyr/foaa041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2019] [Accepted: 07/18/2020] [Indexed: 11/12/2022] Open
Abstract
In yeast, adaptation to varying conditions often requires proper regulation of the plasma membrane potential. To determine yeast membrane potential change, optical methods involving potentiometric dyes have been supplemental to the direct electrode-based method. However, the hydrophobic nature of the dyes and their slow distribution across the membrane still limits their utilization. Genetically encoded voltage indicator (GEVI) proteins employed in neuroscience offer a tantalizing alternative for monitoring yeast membrane potential change. In this work, several widely used GEVI proteins were assessed in Saccharomyces cerevisiae for their expression and function as a voltage reporter. Among them, only ArcLight and Accelerated Sensor of Action Potential (ASAP) proteins could be expressed and transported to the plasma membrane. While the voltage-sensing capability was demonstrated for both ArcLight and ASAP, ArcLight fluorescence was sensitive to the intracellular pH change concurrently with the voltage change. Therefore, we established that ASAP is the more suitable GEVI protein for reporting yeast membrane potential change. This voltage-sensing reporter for yeast based on ASAP offers a new effective strategy for real-time optical detection of yeast membrane potential change, which potentially facilitates many areas of yeast research including optimizing growth conditions for industrial use and investigating yeast ion transport system.
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Affiliation(s)
- Walrati Limapichat
- National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand
| | - Wichai Pornthanakasem
- National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand
| | - Chatchaya Satitthammachart
- National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand
| | - Penchit Chitnumsub
- National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand
| | - Ubolsree Leartsakulpanich
- National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand
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Bioelectrical controls of morphogenesis: from ancient mechanisms of cell coordination to biomedical opportunities. Curr Opin Genet Dev 2019; 57:61-69. [PMID: 31442749 DOI: 10.1016/j.gde.2019.06.014] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2019] [Revised: 06/06/2019] [Accepted: 06/18/2019] [Indexed: 11/21/2022]
Abstract
Cell-to-cell communication is a cornerstone of multicellular existence. The ancient mechanism of sharing information between cells using the conductance of ions across cell membranes and the propagation of electrical signals through tissue space is a powerful means of efficiently controlling cell decisions and behaviors. Our understanding of how cells use changes in 'bioelectrical' signals to elicit systems-level responses has dramatically improved in recent years. We are now in a position to not just describe these changes, but to also predictively alter them to learn more about their importance for developmental biology and regenerative medicine. Recent work is helping researchers construct a more integrative view of how these simple controls can orchestrate downstream changes in protein signaling pathways and gene regulatory networks. In this review, we highlight experiments and analyses that have led to new insights in bioelectrical controls, specifically as key modulators of complex pattern formation and tissue regeneration. We also discuss opportunities for the development of new therapeutic approaches in regenerative medicine applications by exploiting this fundamental biological phenomenon.
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5
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Wu F, Zhou B, Wang J, Zhong M, Das A, Watkinson M, Hing K, Zhang DW, Krause S. Photoelectrochemical Imaging System for the Mapping of Cell Surface Charges. Anal Chem 2019; 91:5896-5903. [DOI: 10.1021/acs.analchem.9b00304] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Fan Wu
- School of Engineering and Materials Science, Queen Mary University of London, Mile End Road, London E1 4NS, U.K
- Institute of Medical Engineering, School of Basic Medical Sciences, Xi’an Jiaotong University Health Science Center, Xi’an, 710061, China
| | - Bo Zhou
- School of Engineering and Materials Science, Queen Mary University of London, Mile End Road, London E1 4NS, U.K
| | - Jian Wang
- Institute of Medical Engineering, School of Basic Medical Sciences, Xi’an Jiaotong University Health Science Center, Xi’an, 710061, China
| | - Muchun Zhong
- School of Engineering and Materials Science, Queen Mary University of London, Mile End Road, London E1 4NS, U.K
| | - Anirban Das
- School of Engineering and Materials Science, Queen Mary University of London, Mile End Road, London E1 4NS, U.K
| | - Michael Watkinson
- The Lennard-Jones Laboratories, School of Chemical and Physical Sciences, Keele University, Staffordshire, ST5 5BG, U.K
| | - Karin Hing
- School of Engineering and Materials Science, Queen Mary University of London, Mile End Road, London E1 4NS, U.K
| | - De-Wen Zhang
- Institute of Medical Engineering, School of Basic Medical Sciences, Xi’an Jiaotong University Health Science Center, Xi’an, 710061, China
| | - Steffi Krause
- School of Engineering and Materials Science, Queen Mary University of London, Mile End Road, London E1 4NS, U.K
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6
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Arthur PK, Yeboah AB, Issah I, Balapangu S, Kwofie SK, Asimeng BO, Foster EJ, Tiburu EK. Electrochemical Response of Saccharomyces cerevisiae Corresponds to Cell Viability upon Exposure to Dioclea reflexa Seed Extracts and Antifungal Drugs. BIOSENSORS-BASEL 2019; 9:bios9010045. [PMID: 30897802 PMCID: PMC6468906 DOI: 10.3390/bios9010045] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/10/2019] [Revised: 02/11/2019] [Accepted: 03/02/2019] [Indexed: 12/20/2022]
Abstract
Dioclea reflexa bioactive compounds have been shown to contain antioxidant properties. The extracts from the same plant are used in traditional medical practices to treat various diseases with impressive outcomes. In this study, ionic mobility in Saccharomyces cerevisiae cells in the presence of D. reflexa seed extracts was monitored using electrochemical detection methods to link cell death to ionic imbalance. Cells treated with ethanol, methanol, and water extracts were studied using cyclic voltammetry and cell counting to correlate electrochemical behavior and cell viability, respectively. The results were compared with cells treated with pore-forming Amphotericin b (Amp b), as well as Fluconazole (Flu) and the antimicrobial drug Rifampicin (Rif). The D. reflexa seed water extract (SWE) revealed higher anodic peak current with 58% cell death. Seed methanol extract (SME) and seed ethanol extract (SEE) recorded 31% and 22% cell death, respectively. Among the three control drugs, Flu revealed the highest cell death of about 64%, whereas Amp b and Rif exhibited cell deaths of 35% and 16%, respectively, after 8 h of cell growth. It was observed that similar to SWE, there was an increase in the anodic peak current in the presence of different concentrations of Amp b, which also correlated with enhanced cell death. It was concluded from this observation that Amp b and SWE might follow similar mechanisms to inhibit cell growth. Thus, the individual bioactive compounds from the water extracts of D. reflexa seeds could further be purified and tested to validate their potential therapeutic application. The strategy to link electrochemical behavior to biochemical responses could be a simple, fast, and robust screening technique for new drug targets and to understand the mechanism of action of such drugs against disease models.
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Affiliation(s)
- Patrick Kobina Arthur
- Department of Biochemistry, Cell and Molecular Biology, University of Ghana, Legon P.O. Box LG 54, Ghana.
- West African Centre for Cell Biology of Infectious Pathogens, University of Ghana, Legon P.O. Box LG 54, Ghana.
| | - Anthony Boadi Yeboah
- Department of Biomedical Engineering, School of Engineering Sciences, College of Basic and Applied Sciences, University of Ghana, Legon P.O. Box LG 25, Ghana.
| | - Ibrahim Issah
- Department of Biomedical Engineering, School of Engineering Sciences, College of Basic and Applied Sciences, University of Ghana, Legon P.O. Box LG 25, Ghana.
| | - Srinivasan Balapangu
- West African Centre for Cell Biology of Infectious Pathogens, University of Ghana, Legon P.O. Box LG 54, Ghana.
- Department of Biomedical Engineering, School of Engineering Sciences, College of Basic and Applied Sciences, University of Ghana, Legon P.O. Box LG 25, Ghana.
| | - Samuel K Kwofie
- West African Centre for Cell Biology of Infectious Pathogens, University of Ghana, Legon P.O. Box LG 54, Ghana.
- Department of Biomedical Engineering, School of Engineering Sciences, College of Basic and Applied Sciences, University of Ghana, Legon P.O. Box LG 25, Ghana.
- Department of Medicine, Loyola University Medical Center, Chicago, IL 60153, USA.
| | - Bernard O Asimeng
- Department of Biomedical Engineering, School of Engineering Sciences, College of Basic and Applied Sciences, University of Ghana, Legon P.O. Box LG 25, Ghana.
| | - E Johan Foster
- Department of Materials Science and Engineering, Virginia Tech, Blacksburg, VA 24061, USA.
| | - Elvis K Tiburu
- West African Centre for Cell Biology of Infectious Pathogens, University of Ghana, Legon P.O. Box LG 54, Ghana.
- Department of Biomedical Engineering, School of Engineering Sciences, College of Basic and Applied Sciences, University of Ghana, Legon P.O. Box LG 25, Ghana.
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7
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Electric Pulses Can Influence Galvanotaxis of Dictyostelium discoideum. BIOMED RESEARCH INTERNATIONAL 2018; 2018:2534625. [PMID: 30186854 PMCID: PMC6112078 DOI: 10.1155/2018/2534625] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/30/2018] [Revised: 07/02/2018] [Accepted: 07/31/2018] [Indexed: 01/14/2023]
Abstract
Galvanotaxis, or electrotaxis, plays an essential role in wound healing, embryogenesis, and nerve regeneration. Up until now great efforts have been made to identify the underlying mechanism related to galvanotaxis in various cells under direct current electric field (DCEF) in laboratory studies. However, abundant clinical research shows that non-DCEFs including monopolar or bipolar electric field may also contribute to wound healing and regeneration, although the mechanism remains elusive. Here, we designed a novel electric stimulator and applied DCEF, pulsed DCEF (pDCEF), and bipolar pulse electric field (bpEF) to the cells of Dictyostelium discoideum. The cells had better directional performance under asymmetric 90% duty cycle pDCEF and 80% duty cycle bpEF compared to DCEF, with 10 Hz frequency electric fields eliciting a better cell response than 5 Hz. Interestingly, electrically neutral 50% duty cycle bpEF triggered the highest migration speed, albeit in random directions. The results suggest that electric pulses are vital to galvanotaxis and non-DCEF is promising in both basic and clinical researches.
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8
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Snyder PJ, LaJeunesse DR, Reddy P, Kirste R, Collazo R, Ivanisevic A. Bioelectronics communication: encoding yeast regulatory responses using nanostructured gallium nitride thin films. NANOSCALE 2018; 10:11506-11516. [PMID: 29888776 PMCID: PMC6195121 DOI: 10.1039/c8nr03684e] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Baker's yeast, S. cerevisiae, is a model organism that is used in synthetic biology. The work demonstrates how GaN nanostructured thin films can encode physiological responses in S. cerevisiae yeast. The Ga-polar, n-type, GaN thin films are characterized via Photocurrent Measurements, Atomic Force Microscopy and Kelvin Probe Force Microscopy. UV light is used to induce persistent photoconductivity that results in charge accumulation on the surface. The morphological, chemical and electronic properties of the nanostructured films are utilized to activate the cell wall integrity pathway and alter the amount of chitin produced by the yeast. The encoded cell responses are induced by the semiconductor interfacial properties associated with nanoscale topography and the accumulation of charge on the surface that promotes the build-up of oxygen species and in turn cause a hyperoxia related change in the yeast. The thin films can also alter the membrane voltage of yeast. The observed modulation of the membrane voltage of the yeast exposed to different GaN samples supports the notion that the semiconductor material can cause cell polarization. The results thus define a strategy for bioelectronics communication where the roughness, surface chemistry and charge of the wide band gap semiconductor's thin film surface initiate the encoding of the yeast response.
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Affiliation(s)
- Patrick J Snyder
- Department of Materials Science and Engineering, North Carolina State University, Raleigh, North Carolina 27695, USA.
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9
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Haupt A, Minc N. How cells sense their own shape - mechanisms to probe cell geometry and their implications in cellular organization and function. J Cell Sci 2018; 131:131/6/jcs214015. [PMID: 29581183 DOI: 10.1242/jcs.214015] [Citation(s) in RCA: 48] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
Cells come in a variety of shapes that most often underlie their functions. Regulation of cell morphogenesis implies that there are mechanisms for shape sensing that still remain poorly appreciated. Global and local cell geometry features, such as aspect ratio, size or membrane curvature, may be probed by intracellular modules, such as the cytoskeleton, reaction-diffusion systems or molecular complexes. In multicellular tissues, cell shape emerges as an important means to transduce tissue-inherent chemical and mechanical cues into intracellular organization. One emergent paradigm is that cell-shape sensing is most often based upon mechanisms of self-organization, rather than determinism. Here, we review relevant work that has elucidated some of the core principles of how cellular geometry may be conveyed into spatial information to guide processes, such as polarity, signaling, morphogenesis and division-plane positioning.
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Affiliation(s)
- Armin Haupt
- Institut Jacques Monod, CNRS UMR7592 and Université Paris Diderot, 15 rue Hélène Brion, 75205 Paris Cedex 13, France
| | - Nicolas Minc
- Institut Jacques Monod, CNRS UMR7592 and Université Paris Diderot, 15 rue Hélène Brion, 75205 Paris Cedex 13, France
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10
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Angelova MI, Bitbol AF, Seigneuret M, Staneva G, Kodama A, Sakuma Y, Kawakatsu T, Imai M, Puff N. pH sensing by lipids in membranes: The fundamentals of pH-driven migration, polarization and deformations of lipid bilayer assemblies. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2018; 1860:2042-2063. [PMID: 29501601 DOI: 10.1016/j.bbamem.2018.02.026] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2018] [Revised: 02/22/2018] [Accepted: 02/24/2018] [Indexed: 01/27/2023]
Abstract
Most biological molecules contain acido-basic groups that modulate their structure and interactions. A consequence is that pH gradients, local heterogeneities and dynamic variations are used by cells and organisms to drive or regulate specific biological functions including energetic metabolism, vesicular traffic, migration and spatial patterning of tissues in development. While the direct or regulatory role of pH in protein function is well documented, the role of hydrogen and hydroxyl ions in modulating the properties of lipid assemblies such as bilayer membranes is only beginning to be understood. Here, we review approaches using artificial lipid vesicles that have been instrumental in providing an understanding of the influence of pH gradients and local variations on membrane vectorial motional processes: migration, membrane curvature effects promoting global or local deformations, crowding generation by segregative polarization processes. In the case of pH induced local deformations, an extensive theoretical framework is given and an application to a specific biological issue, namely the structure and stability of mitochondrial cristae, is described. This article is part of a Special Issue entitled: Emergence of Complex Behavior in Biomembranes edited by Marjorie Longo.
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Affiliation(s)
- Miglena I Angelova
- Sorbonne University, Faculty of Science and Engineering, UFR 925 Physics, Paris F-75005, France; University Paris Diderot - Paris 7, Sorbonne Paris Cité, Laboratory Matière et Systèmes Complexes (MSC) UMR 7057 CNRS, Paris F-75013, France.
| | - Anne-Florence Bitbol
- Sorbonne University, Faculty of Science and Engineering, Laboratory Jean Perrin, UMR 8237 CNRS, Paris F-75005, France
| | - Michel Seigneuret
- University Paris Diderot - Paris 7, Sorbonne Paris Cité, Laboratory Matière et Systèmes Complexes (MSC) UMR 7057 CNRS, Paris F-75013, France
| | - Galya Staneva
- Institute of Biophysics and Biomedical Engineering, Bulgarian Academy of Sciences, Sofia, Bulgaria
| | - Atsuji Kodama
- Department of Physics, Tohoku University, Aoba, Sendai 980-8578, Japan
| | - Yuka Sakuma
- Department of Physics, Tohoku University, Aoba, Sendai 980-8578, Japan
| | | | - Masayuki Imai
- Department of Physics, Tohoku University, Aoba, Sendai 980-8578, Japan
| | - Nicolas Puff
- Sorbonne University, Faculty of Science and Engineering, UFR 925 Physics, Paris F-75005, France; University Paris Diderot - Paris 7, Sorbonne Paris Cité, Laboratory Matière et Systèmes Complexes (MSC) UMR 7057 CNRS, Paris F-75013, France
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11
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McLaughlin KA, Levin M. Bioelectric signaling in regeneration: Mechanisms of ionic controls of growth and form. Dev Biol 2018; 433:177-189. [PMID: 29291972 PMCID: PMC5753428 DOI: 10.1016/j.ydbio.2017.08.032] [Citation(s) in RCA: 132] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2017] [Revised: 08/23/2017] [Accepted: 08/28/2017] [Indexed: 12/11/2022]
Abstract
The ability to control pattern formation is critical for the both the embryonic development of complex structures as well as for the regeneration/repair of damaged or missing tissues and organs. In addition to chemical gradients and gene regulatory networks, endogenous ion flows are key regulators of cell behavior. Not only do bioelectric cues provide information needed for the initial development of structures, they also enable the robust restoration of normal pattern after injury. In order to expand our basic understanding of morphogenetic processes responsible for the repair of complex anatomy, we need to identify the roles of endogenous voltage gradients, ion flows, and electric fields. In complement to the current focus on molecular genetics, decoding the information transduced by bioelectric cues enhances our knowledge of the dynamic control of growth and pattern formation. Recent advances in science and technology place us in an exciting time to elucidate the interplay between molecular-genetic inputs and important biophysical cues that direct the creation of tissues and organs. Moving forward, these new insights enable additional approaches to direct cell behavior and may result in profound advances in augmentation of regenerative capacity.
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Affiliation(s)
- Kelly A McLaughlin
- Allen Discovery Center, Department of Biology, Tufts University, 200 Boston Ave., Suite 4700, Medford, MA 02155, United States.
| | - Michael Levin
- Allen Discovery Center, Department of Biology, Tufts University, 200 Boston Ave., Suite 4700, Medford, MA 02155, United States
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12
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Fields C, Levin M. Multiscale memory and bioelectric error correction in the cytoplasm-cytoskeleton-membrane system. WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE 2017; 10. [DOI: 10.1002/wsbm.1410] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2017] [Revised: 08/19/2017] [Accepted: 10/04/2017] [Indexed: 12/12/2022]
Affiliation(s)
- Chris Fields
- 21 Rue des Lavandiéres, 11160 Caunes Minervois; France
| | - Michael Levin
- Allen Discovery Center at Tufts University; Medford MA USA
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13
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Page A, Perry D, Unwin PR. Multifunctional scanning ion conductance microscopy. Proc Math Phys Eng Sci 2017; 473:20160889. [PMID: 28484332 PMCID: PMC5415692 DOI: 10.1098/rspa.2016.0889] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2016] [Accepted: 03/13/2017] [Indexed: 12/21/2022] Open
Abstract
Scanning ion conductance microscopy (SICM) is a nanopipette-based technique that has traditionally been used to image topography or to deliver species to an interface, particularly in a biological setting. This article highlights the recent blossoming of SICM into a technique with a much greater diversity of applications and capability that can be used either standalone, with advanced control (potential-time) functions, or in tandem with other methods. SICM can be used to elucidate functional information about interfaces, such as surface charge density or electrochemical activity (ion fluxes). Using a multi-barrel probe format, SICM-related techniques can be employed to deposit nanoscale three-dimensional structures and further functionality is realized when SICM is combined with scanning electrochemical microscopy (SECM), with simultaneous measurements from a single probe opening up considerable prospects for multifunctional imaging. SICM studies are greatly enhanced by finite-element method modelling for quantitative treatment of issues such as resolution, surface charge and (tip) geometry effects. SICM is particularly applicable to the study of living systems, notably single cells, although applications extend to materials characterization and to new methods of printing and nanofabrication. A more thorough understanding of the electrochemical principles and properties of SICM provides a foundation for significant applications of SICM in electrochemistry and interfacial science.
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Affiliation(s)
- Ashley Page
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, UK
- MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, UK
| | - David Perry
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, UK
- MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, UK
| | - Patrick R. Unwin
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, UK
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Haupt A, Minc N. Gradients of phosphatidylserine contribute to plasma membrane charge localization and cell polarity in fission yeast. Mol Biol Cell 2016; 28:210-220. [PMID: 27852900 PMCID: PMC5221626 DOI: 10.1091/mbc.e16-06-0353] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2016] [Revised: 11/07/2016] [Accepted: 11/08/2016] [Indexed: 12/19/2022] Open
Abstract
Surface charges at the inner leaflet of the plasma membrane may contribute to regulate the surface recruitment of key signaling factors. Phosphatidylserine (PS) is an abundant charged lipid that may regulate charge distribution in different cell types. Here we characterize the subcellular distribution and function of PS in the rod-shaped, polarized fission yeast. We find that PS preferably accumulates at cell tips and defines a gradient of negative charges along the cell surface. This polarization depends on actin-mediated endocytosis and contributes to the subcellular partitioning of charged polarity-regulating Rho GTPases like Rho1 or Cdc42 in a protein charge-dependent manner. Cells depleted of PS have altered cell dimensions and fail to properly regulate growth from the second end, suggesting a role for PS and membrane charge in polarized cell growth.
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Affiliation(s)
- Armin Haupt
- Institut Jacques Monod, 75205 Paris Cedex 13, France
| | - Nicolas Minc
- Institut Jacques Monod, 75205 Paris Cedex 13, France
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15
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Nakajima KI, Zhao M. Concerted action of KCNJ15/Kir4.2 and intracellular polyamines in sensing physiological electric fields for galvanotaxis. Channels (Austin) 2016; 10:264-6. [PMID: 26983902 DOI: 10.1080/19336950.2016.1165375] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
Affiliation(s)
- Ken-Ichi Nakajima
- a Department of Dermatology , University of California, Davis , Sacramento , CA , USA
| | - Min Zhao
- a Department of Dermatology , University of California, Davis , Sacramento , CA , USA.,b Department of Ophthalmology , School of Medicine , University of California, Davis , Sacramento , CA , USA
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16
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Perry D, Paulose Nadappuram B, Momotenko D, Voyias PD, Page A, Tripathi G, Frenguelli BG, Unwin PR. Surface Charge Visualization at Viable Living Cells. J Am Chem Soc 2016; 138:3152-60. [DOI: 10.1021/jacs.5b13153] [Citation(s) in RCA: 79] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- David Perry
- Department of Chemistry, ‡MOAC Doctoral Training Centre, §Division of Metabolic and Vascular
Health, Warwick Medical School, and ∥School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Binoy Paulose Nadappuram
- Department of Chemistry, ‡MOAC Doctoral Training Centre, §Division of Metabolic and Vascular
Health, Warwick Medical School, and ∥School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Dmitry Momotenko
- Department of Chemistry, ‡MOAC Doctoral Training Centre, §Division of Metabolic and Vascular
Health, Warwick Medical School, and ∥School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Philip D. Voyias
- Department of Chemistry, ‡MOAC Doctoral Training Centre, §Division of Metabolic and Vascular
Health, Warwick Medical School, and ∥School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Ashley Page
- Department of Chemistry, ‡MOAC Doctoral Training Centre, §Division of Metabolic and Vascular
Health, Warwick Medical School, and ∥School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Gyanendra Tripathi
- Department of Chemistry, ‡MOAC Doctoral Training Centre, §Division of Metabolic and Vascular
Health, Warwick Medical School, and ∥School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Bruno G. Frenguelli
- Department of Chemistry, ‡MOAC Doctoral Training Centre, §Division of Metabolic and Vascular
Health, Warwick Medical School, and ∥School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Patrick R. Unwin
- Department of Chemistry, ‡MOAC Doctoral Training Centre, §Division of Metabolic and Vascular
Health, Warwick Medical School, and ∥School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom
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17
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Pezzulo G, Levin M. Re-membering the body: applications of computational neuroscience to the top-down control of regeneration of limbs and other complex organs. Integr Biol (Camb) 2015; 7:1487-517. [PMID: 26571046 DOI: 10.1039/c5ib00221d] [Citation(s) in RCA: 93] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
A major goal of regenerative medicine and bioengineering is the regeneration of complex organs, such as limbs, and the capability to create artificial constructs (so-called biobots) with defined morphologies and robust self-repair capabilities. Developmental biology presents remarkable examples of systems that self-assemble and regenerate complex structures toward their correct shape despite significant perturbations. A fundamental challenge is to translate progress in molecular genetics into control of large-scale organismal anatomy, and the field is still searching for an appropriate theoretical paradigm for facilitating control of pattern homeostasis. However, computational neuroscience provides many examples in which cell networks - brains - store memories (e.g., of geometric configurations, rules, and patterns) and coordinate their activity towards proximal and distant goals. In this Perspective, we propose that programming large-scale morphogenesis requires exploiting the information processing by which cellular structures work toward specific shapes. In non-neural cells, as in the brain, bioelectric signaling implements information processing, decision-making, and memory in regulating pattern and its remodeling. Thus, approaches used in computational neuroscience to understand goal-seeking neural systems offer a toolbox of techniques to model and control regenerative pattern formation. Here, we review recent data on developmental bioelectricity as a regulator of patterning, and propose that target morphology could be encoded within tissues as a kind of memory, using the same molecular mechanisms and algorithms so successfully exploited by the brain. We highlight the next steps of an unconventional research program, which may allow top-down control of growth and form for numerous applications in regenerative medicine and synthetic bioengineering.
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Affiliation(s)
- G Pezzulo
- Institute of Cognitive Sciences and Technologies, National Research Council, Rome, Italy
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18
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Cytoskeletal Symmetry Breaking and Chirality: From Reconstituted Systems to Animal Development. Symmetry (Basel) 2015. [DOI: 10.3390/sym7042062] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
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KCNJ15/Kir4.2 couples with polyamines to sense weak extracellular electric fields in galvanotaxis. Nat Commun 2015; 6:8532. [PMID: 26449415 PMCID: PMC4603535 DOI: 10.1038/ncomms9532] [Citation(s) in RCA: 73] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2015] [Accepted: 09/01/2015] [Indexed: 01/09/2023] Open
Abstract
Weak electric fields guide cell migration, known as galvanotaxis/electrotaxis. The sensor(s) cells use to detect the fields remain elusive. Here we perform a large-scale screen using an RNAi library targeting ion transporters in human cells. We identify 18 genes that show either defective or increased galvanotaxis after knockdown. Knockdown of the KCNJ15 gene (encoding inwardly rectifying K+ channel Kir4.2) specifically abolishes galvanotaxis, without affecting basal motility and directional migration in a monolayer scratch assay. Depletion of cytoplasmic polyamines, highly positively charged small molecules that regulate Kir4.2 function, completely inhibits galvanotaxis, whereas increase of intracellular polyamines enhances galvanotaxis in a Kir4.2-dependent manner. Expression of a polyamine-binding defective mutant of KCNJ15 significantly decreases galvanotaxis. Knockdown or inhibition of KCNJ15 prevents phosphatidylinositol 3,4,5-triphosphate (PIP3) from distributing to the leading edge. Taken together these data suggest a previously unknown two-molecule sensing mechanism in which KCNJ15/Kir4.2 couples with polyamines in sensing weak electric fields. Directed cell migration in weak electric fields is known as galvanotaxis, but the cellular sensor and mechanism is not known. Here Nakajima et al. identify inwardly rectifying K+ channel Kir4.2 as an important mediator of galvanotaxis, that depends on the cytoplasmic distribution of intracellular polyamines.
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20
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Gao R, Zhao S, Jiang X, Sun Y, Zhao S, Gao J, Borleis J, Willard S, Tang M, Cai H, Kamimura Y, Huang Y, Jiang J, Huang Z, Mogilner A, Pan T, Devreotes PN, Zhao M. A large-scale screen reveals genes that mediate electrotaxis in Dictyostelium discoideum. Sci Signal 2015; 8:ra50. [PMID: 26012633 PMCID: PMC4470479 DOI: 10.1126/scisignal.aab0562] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Directional cell migration in an electric field, a phenomenon called galvanotaxis or electrotaxis, occurs in many types of cells, and may play an important role in wound healing and development. Small extracellular electric fields can guide the migration of amoeboid cells, and we established a large-scale screening approach to search for mutants with electrotaxis phenotypes from a collection of 563 Dictyostelium discoideum strains with morphological defects. We identified 28 strains that were defective in electrotaxis and 10 strains with a slightly higher directional response. Using plasmid rescue followed by gene disruption, we identified some of the mutated genes, including some previously implicated in chemotaxis. Among these, we studied PiaA, which encodes a critical component of TORC2, a kinase protein complex that transduces changes in motility by activating the kinase PKB (also known as Akt). Furthermore, we found that electrotaxis was decreased in mutants lacking gefA, rasC, rip3, lst8, or pkbR1, genes that encode other components of the TORC2-PKB pathway. Thus, we have developed a high-throughput screening technique that will be a useful tool to elucidate the molecular mechanisms of electrotaxis.
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Affiliation(s)
- Runchi Gao
- School of Life Sciences, Yunnan Normal University, Kunming, Yunnan 650500, China. Departments of Dermatology and Ophthalmology, Institute for Regenerative Cures, School of Medicine, University of California at Davis, Davis, CA 95817, USA. Department of Cell Biology and Anatomy, Johns Hopkins University, School of Medicine, Baltimore, MD 21205, USA
| | - Siwei Zhao
- Department of Biomedical Engineering, University of California at Davis, Davis, CA 95616, USA
| | - Xupin Jiang
- State Key Laboratory of Trauma, Burns and Combined Injury, Third Military Medical University, Chongqing 400042, China
| | - Yaohui Sun
- Departments of Dermatology and Ophthalmology, Institute for Regenerative Cures, School of Medicine, University of California at Davis, Davis, CA 95817, USA
| | - Sanjun Zhao
- School of Life Sciences, Yunnan Normal University, Kunming, Yunnan 650500, China. Departments of Dermatology and Ophthalmology, Institute for Regenerative Cures, School of Medicine, University of California at Davis, Davis, CA 95817, USA
| | - Jing Gao
- School of Life Sciences, Yunnan Normal University, Kunming, Yunnan 650500, China. Departments of Dermatology and Ophthalmology, Institute for Regenerative Cures, School of Medicine, University of California at Davis, Davis, CA 95817, USA
| | - Jane Borleis
- Department of Cell Biology and Anatomy, Johns Hopkins University, School of Medicine, Baltimore, MD 21205, USA
| | - Stacey Willard
- Department of Cell Biology and Anatomy, Johns Hopkins University, School of Medicine, Baltimore, MD 21205, USA
| | - Ming Tang
- Department of Cell Biology and Anatomy, Johns Hopkins University, School of Medicine, Baltimore, MD 21205, USA
| | - Huaqing Cai
- Department of Cell Biology and Anatomy, Johns Hopkins University, School of Medicine, Baltimore, MD 21205, USA
| | - Yoichiro Kamimura
- Department of Cell Biology and Anatomy, Johns Hopkins University, School of Medicine, Baltimore, MD 21205, USA
| | - Yuesheng Huang
- State Key Laboratory of Trauma, Burns and Combined Injury, Third Military Medical University, Chongqing 400042, China
| | - Jianxin Jiang
- State Key Laboratory of Trauma, Burns and Combined Injury, Third Military Medical University, Chongqing 400042, China
| | - Zunxi Huang
- School of Life Sciences, Yunnan Normal University, Kunming, Yunnan 650500, China
| | - Alex Mogilner
- Courant Institute and Department of Biology, New York University, 251 Mercer Street, New York, NY 10012, USA
| | - Tingrui Pan
- Department of Biomedical Engineering, University of California at Davis, Davis, CA 95616, USA
| | - Peter N Devreotes
- Department of Cell Biology and Anatomy, Johns Hopkins University, School of Medicine, Baltimore, MD 21205, USA
| | - Min Zhao
- Departments of Dermatology and Ophthalmology, Institute for Regenerative Cures, School of Medicine, University of California at Davis, Davis, CA 95817, USA.
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