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For: Gardiner BS, Wong KKL, Joldes GR, Rich AJ, Tan CW, Burgess AW, Smith DW. Discrete Element Framework for Modelling Extracellular Matrix, Deformable Cells and Subcellular Components. PLoS Comput Biol 2015;11:e1004544. [PMID: 26452000 PMCID: PMC4599884 DOI: 10.1371/journal.pcbi.1004544] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2015] [Accepted: 09/09/2015] [Indexed: 01/13/2023]  Open
Number Cited by Other Article(s)
1
Crossley RM, Johnson S, Tsingos E, Bell Z, Berardi M, Botticelli M, Braat QJS, Metzcar J, Ruscone M, Yin Y, Shuttleworth R. Modeling the extracellular matrix in cell migration and morphogenesis: a guide for the curious biologist. Front Cell Dev Biol 2024;12:1354132. [PMID: 38495620 PMCID: PMC10940354 DOI: 10.3389/fcell.2024.1354132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Accepted: 02/12/2024] [Indexed: 03/19/2024]  Open
2
Carrasco-Mantis A, Alarcón T, Sanz-Herrera JA. An in silico study on the influence of extracellular matrix mechanics on vasculogenesis. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2023;231:107369. [PMID: 36738607 DOI: 10.1016/j.cmpb.2023.107369] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2022] [Revised: 01/21/2023] [Accepted: 01/23/2023] [Indexed: 06/18/2023]
3
Chen T, Xu B, Chen H, Sun Y, Song J, Sun X, Zhang X, Hua W. Transcription factor NFE2L3 promotes the proliferation of esophageal squamous cell carcinoma cells and causes radiotherapy resistance by regulating IL-6. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2022;226:107102. [PMID: 36108571 DOI: 10.1016/j.cmpb.2022.107102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Revised: 08/23/2022] [Accepted: 08/29/2022] [Indexed: 06/15/2023]
4
Wang B, Liao X, Ni Y, Zhang L, Liang J, Wang J, Liu Y, Sun X, Ou Y, Wu Q, Shi L, Yang Z, Lan L. High-resolution medical image reconstruction based on residual neural network for diagnosis of cerebral aneurysm. Front Cardiovasc Med 2022;9:1013031. [PMID: 36337881 PMCID: PMC9632742 DOI: 10.3389/fcvm.2022.1013031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2022] [Accepted: 09/29/2022] [Indexed: 11/13/2022]  Open
5
Gardiner BS, Smith DW, Lee C, Ngo JP, Evans RG. Renal oxygenation: From data to insight. Acta Physiol (Oxf) 2020;228:e13450. [PMID: 32012449 DOI: 10.1111/apha.13450] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Revised: 01/14/2020] [Accepted: 01/30/2020] [Indexed: 12/14/2022]
6
Pałubicki W, Kokosza A, Burian A. Formal description of plant morphogenesis. JOURNAL OF EXPERIMENTAL BOTANY 2019;70:3601-3613. [PMID: 31290543 DOI: 10.1093/jxb/erz210] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2019] [Accepted: 05/14/2019] [Indexed: 06/09/2023]
7
Burrowes KS, Iravani A, Kang W. Integrated lung tissue mechanics one piece at a time: Computational modeling across the scales of biology. Clin Biomech (Bristol, Avon) 2019;66:20-31. [PMID: 29352607 DOI: 10.1016/j.clinbiomech.2018.01.002] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/07/2017] [Revised: 12/05/2017] [Accepted: 01/09/2018] [Indexed: 02/07/2023]
8
Matsiaka OM, Baker RE, Shah ET, Simpson MJ. Mechanistic and experimental models of cell migration reveal the importance of cell-to-cell pushing in cell invasion. Biomed Phys Eng Express 2019. [DOI: 10.1088/2057-1976/ab1b01] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
9
Datta P, Barui A, Wu Y, Ozbolat V, Moncal KK, Ozbolat IT. Essential steps in bioprinting: From pre- to post-bioprinting. Biotechnol Adv 2018;36:1481-1504. [PMID: 29909085 DOI: 10.1016/j.biotechadv.2018.06.003] [Citation(s) in RCA: 68] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2018] [Revised: 05/15/2018] [Accepted: 06/10/2018] [Indexed: 12/17/2022]
10
Simulated tissue growth for 3D printed scaffolds. Biomech Model Mechanobiol 2018;17:1481-1495. [DOI: 10.1007/s10237-018-1040-9] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2017] [Accepted: 05/28/2018] [Indexed: 10/14/2022]
11
Kennedy RC, Marmor M, Marcucio R, Hunt CA. Simulation enabled search for explanatory mechanisms of the fracture healing process. PLoS Comput Biol 2018;14:e1005980. [PMID: 29394245 PMCID: PMC5812655 DOI: 10.1371/journal.pcbi.1005980] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2017] [Revised: 02/14/2018] [Accepted: 01/11/2018] [Indexed: 12/25/2022]  Open
12
Wen T, Medveczky D, Wu J, Wu J. Colonoscopy procedure simulation: virtual reality training based on a real time computational approach. Biomed Eng Online 2018;17:9. [PMID: 29370860 PMCID: PMC5784697 DOI: 10.1186/s12938-018-0433-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2017] [Accepted: 01/08/2018] [Indexed: 12/29/2022]  Open
13
Wong KK. Three-dimensional discrete element method for the prediction of protoplasmic seepage through membrane in a biological cell. J Biomech 2017;65:115-124. [DOI: 10.1016/j.jbiomech.2017.10.023] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2017] [Revised: 10/09/2017] [Accepted: 10/15/2017] [Indexed: 12/15/2022]
14
González-Valverde I, García-Aznar JM. A hybrid computational model to explore the topological characteristics of epithelial tissues. INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN BIOMEDICAL ENGINEERING 2017;33:e2877. [PMID: 28249103 DOI: 10.1002/cnm.2877] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2016] [Revised: 02/22/2017] [Accepted: 02/26/2017] [Indexed: 06/06/2023]
15
Nematbakhsh A, Sun W, Brodskiy PA, Amiri A, Narciso C, Xu Z, Zartman JJ, Alber M. Multi-scale computational study of the mechanical regulation of cell mitotic rounding in epithelia. PLoS Comput Biol 2017;13:e1005533. [PMID: 28531187 PMCID: PMC5460904 DOI: 10.1371/journal.pcbi.1005533] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2016] [Revised: 06/06/2017] [Accepted: 04/24/2017] [Indexed: 12/20/2022]  Open
16
Camley BA, Rappel WJ. Physical models of collective cell motility: from cell to tissue. JOURNAL OF PHYSICS D: APPLIED PHYSICS 2017;50:113002. [PMID: 28989187 PMCID: PMC5625300 DOI: 10.1088/1361-6463/aa56fe] [Citation(s) in RCA: 89] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
17
Gardiner BS, Joldes GR, Wong KKL, Tan CW, Smith DW. Controlling seepage in discrete particle simulations of biological systems. Comput Methods Biomech Biomed Engin 2015;19:1160-70. [PMID: 26629728 DOI: 10.1080/10255842.2015.1115022] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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