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For: Shorten DP, Spinney RE, Lizier JT. Estimating Transfer Entropy in Continuous Time Between Neural Spike Trains or Other Event-Based Data. PLoS Comput Biol 2021;17:e1008054. [PMID: 33872296 PMCID: PMC8084348 DOI: 10.1371/journal.pcbi.1008054] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2020] [Revised: 04/29/2021] [Accepted: 02/19/2021] [Indexed: 11/24/2022]  Open
Number Cited by Other Article(s)
1
Zoller H, Garcia Perez C, Betel Geijo Fernández J, Zu Castell W. Measuring and understanding information storage and transfer in a simulated human gut microbiome. PLoS Comput Biol 2024;20:e1012359. [PMID: 39288161 PMCID: PMC11407623 DOI: 10.1371/journal.pcbi.1012359] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2023] [Accepted: 07/24/2024] [Indexed: 09/19/2024]  Open
2
Kobayashi R, Shinomoto S. Inference of monosynaptic connections from parallel spike trains: A review. Neurosci Res 2024:S0168-0102(24)00097-X. [PMID: 39098768 DOI: 10.1016/j.neures.2024.07.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2024] [Revised: 07/12/2024] [Accepted: 07/19/2024] [Indexed: 08/06/2024]
3
Yuan AE, Shou W. A rigorous and versatile statistical test for correlations between stationary time series. PLoS Biol 2024;22:e3002758. [PMID: 39146390 PMCID: PMC11398661 DOI: 10.1371/journal.pbio.3002758] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 09/13/2024] [Accepted: 07/17/2024] [Indexed: 08/17/2024]  Open
4
Song YM, Jeong J, de Los Reyes AA, Lim D, Cho CH, Yeom JW, Lee T, Lee JB, Lee HJ, Kim JK. Causal dynamics of sleep, circadian rhythm, and mood symptoms in patients with major depression and bipolar disorder: insights from longitudinal wearable device data. EBioMedicine 2024;103:105094. [PMID: 38579366 PMCID: PMC11002811 DOI: 10.1016/j.ebiom.2024.105094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2023] [Revised: 03/14/2024] [Accepted: 03/17/2024] [Indexed: 04/07/2024]  Open
5
Mukherjee S, Babadi B. Adaptive modeling and inference of higher-order coordination in neuronal assemblies: A dynamic greedy estimation approach. PLoS Comput Biol 2024;20:e1011605. [PMID: 38805569 PMCID: PMC11161120 DOI: 10.1371/journal.pcbi.1011605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 06/07/2024] [Accepted: 05/20/2024] [Indexed: 05/30/2024]  Open
6
Izzi JVR, Ferreira RF, Girardi VA, Pena RFO. Identifying Effective Connectivity between Stochastic Neurons with Variable-Length Memory Using a Transfer Entropy Rate Estimator. Brain Sci 2024;14:442. [PMID: 38790421 PMCID: PMC11119028 DOI: 10.3390/brainsci14050442] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2024] [Revised: 04/22/2024] [Accepted: 04/26/2024] [Indexed: 05/26/2024]  Open
7
Donner C, Bartram J, Hornauer P, Kim T, Roqueiro D, Hierlemann A, Obozinski G, Schröter M. Ensemble learning and ground-truth validation of synaptic connectivity inferred from spike trains. PLoS Comput Biol 2024;20:e1011964. [PMID: 38683881 PMCID: PMC11081509 DOI: 10.1371/journal.pcbi.1011964] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 05/09/2024] [Accepted: 03/02/2024] [Indexed: 05/02/2024]  Open
8
Mijatovic G, Bara C, Pernice R, Loncar-Turukalo T, Nollo G, Faes L. Exploring the Short-Term Memory of Heart Rate Variability through Model-Free Information Measures. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2023;2023:1-4. [PMID: 38083690 DOI: 10.1109/embc40787.2023.10341158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
9
Putney J, Niebur T, Wood L, Conn R, Sponberg S. An information theoretic method to resolve millisecond-scale spike timing precision in a comprehensive motor program. PLoS Comput Biol 2023;19:e1011170. [PMID: 37307288 PMCID: PMC10289674 DOI: 10.1371/journal.pcbi.1011170] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Revised: 06/23/2023] [Accepted: 05/10/2023] [Indexed: 06/14/2023]  Open
10
Shao K, Logothetis NK, Besserve M. Information theoretic measures of causal influences during transient neural events. FRONTIERS IN NETWORK PHYSIOLOGY 2023;3:1085347. [PMID: 37323237 PMCID: PMC10266490 DOI: 10.3389/fnetp.2023.1085347] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Accepted: 05/11/2023] [Indexed: 06/17/2023]
11
Banerjee A, Chandra S, Ott E. Network inference from short, noisy, low time-resolution, partial measurements: Application to C. elegans neuronal calcium dynamics. Proc Natl Acad Sci U S A 2023;120:e2216030120. [PMID: 36927154 PMCID: PMC10041139 DOI: 10.1073/pnas.2216030120] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Accepted: 02/04/2023] [Indexed: 03/18/2023]  Open
12
Fagerholm ED, Dezhina Z, Moran RJ, Turkheimer FE, Leech R. A primer on entropy in neuroscience. Neurosci Biobehav Rev 2023;146:105070. [PMID: 36736445 DOI: 10.1016/j.neubiorev.2023.105070] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Revised: 01/16/2023] [Accepted: 01/29/2023] [Indexed: 02/04/2023]
13
Kathpalia A, Nagaraj N. Granger causality for compressively sensed sparse signals. Phys Rev E 2023;107:034308. [PMID: 37072975 DOI: 10.1103/physreve.107.034308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Accepted: 02/26/2023] [Indexed: 04/20/2023]
14
Yuan AE, Shou W. Data-driven causal analysis of observational biological time series. eLife 2022;11:e72518. [PMID: 35983746 PMCID: PMC9391047 DOI: 10.7554/elife.72518] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2021] [Accepted: 01/23/2022] [Indexed: 11/28/2022]  Open
15
Cai R, Wu S, Qiao J, Hao Z, Zhang K, Zhang X. THPs: Topological Hawkes Processes for Learning Causal Structure on Event Sequences. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2022;PP:479-493. [PMID: 35613067 DOI: 10.1109/tnnls.2022.3175622] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
16
Shorten DP, Priesemann V, Wibral M, Lizier JT. Early lock-in of structured and specialised information flows during neural development. eLife 2022;11:74651. [PMID: 35286256 PMCID: PMC9064303 DOI: 10.7554/elife.74651] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2021] [Accepted: 03/13/2022] [Indexed: 11/13/2022]  Open
17
Imaizumi T, Umeki N, Yoshizawa R, Obuchi T, Sako Y, Kabashima Y. Assessing transfer entropy from biochemical data. Phys Rev E 2022;105:034403. [PMID: 35428091 DOI: 10.1103/physreve.105.034403] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Accepted: 02/16/2022] [Indexed: 06/14/2023]
18
Dalla Porta L, Castro DM, Copelli M, Carelli PV, Matias FS. Feedforward and feedback influences through distinct frequency bands between two spiking-neuron networks. Phys Rev E 2021;104:054404. [PMID: 34942789 DOI: 10.1103/physreve.104.054404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Accepted: 09/27/2021] [Indexed: 11/07/2022]
19
Cox LA. Toward practical causal epidemiology. GLOBAL EPIDEMIOLOGY 2021;3:100065. [PMID: 37635727 PMCID: PMC10446107 DOI: 10.1016/j.gloepi.2021.100065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Revised: 10/17/2021] [Accepted: 10/18/2021] [Indexed: 11/16/2022]  Open
20
Mijatovic G, Antonacci Y, Faes L. Measuring the Rate of Information Transfer in Point-Process Data: Application to Cardiovascular Interactions. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2021;2021:341-344. [PMID: 34891305 DOI: 10.1109/embc46164.2021.9629688] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
21
Causal Information Rate. ENTROPY 2021;23:e23081087. [PMID: 34441227 PMCID: PMC8394343 DOI: 10.3390/e23081087] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/24/2021] [Revised: 08/13/2021] [Accepted: 08/18/2021] [Indexed: 11/23/2022]
22
Perinelli A, Castelluzzo M, Tabarelli D, Mazza V, Ricci L. Relationship between mutual information and cross-correlation time scale of observability as measures of connectivity strength. CHAOS (WOODBURY, N.Y.) 2021;31:073106. [PMID: 34340343 DOI: 10.1063/5.0053857] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Accepted: 06/11/2021] [Indexed: 06/13/2023]
23
Mijatovic G, Antonacci Y, Loncar-Turukalo T, Minati L, Faes L. An Information-Theoretic Framework to Measure the Dynamic Interaction Between Neural Spike Trains. IEEE Trans Biomed Eng 2021;68:3471-3481. [PMID: 33872139 DOI: 10.1109/tbme.2021.3073833] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
24
Mijatovic G, Pernice R, Perinelli A, Antonacci Y, Busacca A, Javorka M, Ricci L, Faes L. Measuring the Rate of Information Exchange in Point-Process Data With Application to Cardiovascular Variability. FRONTIERS IN NETWORK PHYSIOLOGY 2021;1:765332. [PMID: 36925567 PMCID: PMC10013020 DOI: 10.3389/fnetp.2021.765332] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2021] [Accepted: 11/26/2021] [Indexed: 02/01/2023]
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