1
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Wang X, Xu T, Ding S, Xu Y, Jin X, Guan F. Recombinase polymerase amplification combined with lateral flow dipstick assay for rapid visual detection of A.simplex (s. s.) and A.pegreffii in sea foods. Heliyon 2024; 10:e28943. [PMID: 38623257 PMCID: PMC11016599 DOI: 10.1016/j.heliyon.2024.e28943] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Revised: 03/27/2024] [Accepted: 03/27/2024] [Indexed: 04/17/2024] Open
Abstract
Anisakiasis is a food-borne parasitic disease mainly caused by the third stage of Anisakis simplex (s. s.) and Anisakis pegreffii. Traditional methods for detecting of Anisakis involve morphology identification such as visual inspection, enzyme digestion, and molecular methods based on PCR, but they have certain limitations. In this study, the internal transcribed spacer 1 (ITS 1) regions of Anisakis were targeted to develop a visual screening method for detecting A. simplex (s. s.) and A. pegreffii in fish meat based on recombinase polymerase amplification (RPA) combined with lateral flow dipstick (LFD). Specific primers and probes were designed and optimized for temperature, reaction time, and detection threshold. LFD produced clear visual results that were easily identifiable after a consistent incubation of 10-20 min at 37 °C. The whole process of DNA amplification by RPA and readout by LFD did not exceed 30 min. In addition, the detection limit is up to 9.5 × 10-4 ng/μL, and the detection of the artificially contaminated samples showed that the developed assay can effectively and specifically detect A. simplex (s. s.) and A. pegreffii, which fully meet the market's requirements for fish food safety supervision.
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Affiliation(s)
- Xiaoming Wang
- College of Life Sciences, China Jiliang University, Hangzhou 310018, China
- Zhejiang Museum of Natural History, Hangzhou 310018, China
| | - Ting Xu
- College of Life Sciences, China Jiliang University, Hangzhou 310018, China
| | - Siling Ding
- College of Life Sciences, China Jiliang University, Hangzhou 310018, China
| | - Ye Xu
- College of Life Sciences, China Jiliang University, Hangzhou 310018, China
| | - Xingsheng Jin
- Zhejiang Museum of Natural History, Hangzhou 310018, China
| | - Feng Guan
- College of Life Sciences, China Jiliang University, Hangzhou 310018, China
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2
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Kim J, Álvarez-Rodríguez A, Li Z, Radwanska M, Magez S. Recent Progress in the Detection of Surra, a Neglected Disease Caused by Trypanosoma evansi with a One Health Impact in Large Parts of the Tropic and Sub-Tropic World. Microorganisms 2023; 12:44. [PMID: 38257871 PMCID: PMC10819111 DOI: 10.3390/microorganisms12010044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Revised: 12/17/2023] [Accepted: 12/21/2023] [Indexed: 01/24/2024] Open
Abstract
Surra is a wasting disease triggered by infection with Trypanosoma evansi, a protozoan blood parasite that causes mortality and morbidity in a broad spectrum of wild and domestic animals and occasionally humans. Trypanosoma evansi has the widest geographical spread among all pathogenic trypanosomes, inflicting significant worldwide economic problems due to its adverse effects on meat and milk production. For diagnosis, most endemic countries continue to rely on traditional parasitological and serological techniques, such as the analysis of blood smears by microscopy and the Card Agglutination Test for T. evansi (CATT/T. evansi). Although these techniques suffer from a limited positive predictive value (PPV), resource constraints in endemic countries often hinder the adoption of more advanced diagnostic tools such as PCR. This paper addresses diverse diagnostic approaches for identifying T. evansi and assesses their viability in field settings. Moreover, it underscores the urgency of transitioning towards molecular diagnostic techniques such as Loop-Mediated Isothermal Amplification (LAMP) and Recombinase Polymerase Amplification (RPA) for dependable high-PPV point-of-care (POC) diagnostics. Finally, this review delves into strategies to enhance and refine next-generation diagnostics for Surra as part of a One Health approach.
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Affiliation(s)
- Jeongmin Kim
- Laboratory for Biomedical Research, Department of Environmental Technology, Food Technology and Molecular Biotechnology KR01, Ghent University Global Campus, Incheon 21985, Republic of Korea; (J.K.); (A.Á.-R.); (M.R.)
| | - Andrés Álvarez-Rodríguez
- Laboratory for Biomedical Research, Department of Environmental Technology, Food Technology and Molecular Biotechnology KR01, Ghent University Global Campus, Incheon 21985, Republic of Korea; (J.K.); (A.Á.-R.); (M.R.)
- Brussels Center for Immunology (BCIM), Department of Bioengineering Sciences (DBIT), Vrije Universiteit Brussel (VUB), 1050 Brussels, Belgium;
- Department of Biochemistry and Microbiology WE10, Ghent University, 9000 Ghent, Belgium
| | - Zeng Li
- Brussels Center for Immunology (BCIM), Department of Bioengineering Sciences (DBIT), Vrije Universiteit Brussel (VUB), 1050 Brussels, Belgium;
| | - Magdalena Radwanska
- Laboratory for Biomedical Research, Department of Environmental Technology, Food Technology and Molecular Biotechnology KR01, Ghent University Global Campus, Incheon 21985, Republic of Korea; (J.K.); (A.Á.-R.); (M.R.)
- Department of Biomedical Molecular Biology WE14, Ghent University, 9000 Ghent, Belgium
| | - Stefan Magez
- Laboratory for Biomedical Research, Department of Environmental Technology, Food Technology and Molecular Biotechnology KR01, Ghent University Global Campus, Incheon 21985, Republic of Korea; (J.K.); (A.Á.-R.); (M.R.)
- Brussels Center for Immunology (BCIM), Department of Bioengineering Sciences (DBIT), Vrije Universiteit Brussel (VUB), 1050 Brussels, Belgium;
- Department of Biochemistry and Microbiology WE10, Ghent University, 9000 Ghent, Belgium
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3
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Tan M, Liao C, Liang L, Yi X, Zhou Z, Wei G. Recent advances in recombinase polymerase amplification: Principle, advantages, disadvantages and applications. Front Cell Infect Microbiol 2022; 12:1019071. [PMID: 36519130 PMCID: PMC9742450 DOI: 10.3389/fcimb.2022.1019071] [Citation(s) in RCA: 40] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2022] [Accepted: 11/03/2022] [Indexed: 11/29/2022] Open
Abstract
After the outbreak of SARS-CoV-2, nucleic acid testing quickly entered people's lives. In addition to the polymerase chain reaction (PCR) which was commonly used in nucleic acid testing, isothermal amplification methods were also important nucleic acid testing methods. Among several common isothermal amplification methods like displaced amplification, rolling circle amplification, and so on, recombinase polymerase amplification (RPA) was recently paid more attention to. It had the advantages like a simple operation, fast amplification speed, and reaction at 37-42°C, et al. So it was very suitable for field detection. However, there were still some disadvantages to RPA. Herein, our review mainly summarized the principle, advantages, and disadvantages of RPA. The specific applications of RPA in bacterial detection, fungi detection, virus detection, parasite detection, drug resistance gene detection, genetically modified food detection, and SARS-CoV-2 detection were also described. It was hoped that the latest research progress on RPA could be better delivered to the readers who were interested in RPA.
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Álvarez-Rodríguez A, Jin BK, Radwanska M, Magez S. Recent progress in diagnosis and treatment of Human African Trypanosomiasis has made the elimination of this disease a realistic target by 2030. Front Med (Lausanne) 2022; 9:1037094. [PMID: 36405602 PMCID: PMC9669443 DOI: 10.3389/fmed.2022.1037094] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2022] [Accepted: 10/19/2022] [Indexed: 11/06/2022] Open
Abstract
Human African Trypanosomiasis (HAT) is caused by unicellular flagellated protozoan parasites of the genus Trypanosoma brucei. The subspecies T. b. gambiense is mainly responsible for mostly chronic anthroponotic infections in West- and Central Africa, accounting for roughly 95% of all HAT cases. Trypanosoma b. rhodesiense results in more acute zoonotic infections in East-Africa. Because HAT has a two-stage pathogenesis, treatment depends on clinical assessment of patients and the determination whether or not parasites have crossed the blood brain barrier. Today, ultimate confirmation of parasitemia is still done by microscopy analysis. However, the introduction of diagnostic lateral flow devices has been a major contributor to the recent dramatic drop in T. b. gambiense HAT. Other techniques such as loop mediated isothermal amplification (LAMP) and recombinant polymerase amplification (RPA)-based tests have been published but are still not widely used in the field. Most recently, CRISPR-Cas technology has been proposed to improve the intrinsic diagnostic characteristics of molecular approaches. This will become crucial in the near future, as preventing the resurgence of HAT will be a priority and will require tools with extreme high positive and negative predicted values, as well as excellent sensitivity and specificity. As for treatment, pentamidine and suramin have historically been the drugs of choice for the treatment of blood-stage gambiense-HAT and rhodesiense-HAT, respectively. For treatment of second-stage infections, drugs that pass the blood brain barrier are needed, and melarsoprol has been effectively used for both forms of HAT in the past. However, due to the high occurrence of post-treatment encephalopathy, the drug is not recommended for use in T. b. gambiense HAT. Here, a combination therapy of eflornithine and nifurtimox (NECT) has been the choice of treatment since 2009. As this treatment requires IV perfusion of eflornithine, efforts were launched in 2003 by the drugs for neglected disease initiative (DNDi) to find an oral-only therapy solution, suitable for rural sub-Saharan Africa treatment conditions. In 2019 this resulted in the introduction of fexinidazole, with a treatment regimen suitable for both the blood-stage and non-severe second-stage T. b. gambiense infections. Experimental treatment of T. b. rhodesiense HAT has now been initiated as well.
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Affiliation(s)
- Andrés Álvarez-Rodríguez
- Laboratory for Biomedical Research, Ghent University Global Campus, Incheon, South Korea
- Laboratory of Cellular and Molecular Immunology, Vrije Universiteit Brussel, Brussels, Belgium
| | - Bo-Kyung Jin
- Laboratory for Biomedical Research, Ghent University Global Campus, Incheon, South Korea
| | - Magdalena Radwanska
- Laboratory for Biomedical Research, Ghent University Global Campus, Incheon, South Korea
- Department of Biomedical Molecular Biology, Ghent University, Ghent, Belgium
| | - Stefan Magez
- Laboratory for Biomedical Research, Ghent University Global Campus, Incheon, South Korea
- Laboratory of Cellular and Molecular Immunology, Vrije Universiteit Brussel, Brussels, Belgium
- Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium
- *Correspondence: Stefan Magez,
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5
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Boulangé A, Lejon V, Berthier D, Thévenon S, Gimonneau G, Desquesnes M, Abah S, Agboho P, Chilongo K, Gebre T, Fall AG, Kaba D, Magez S, Masiga D, Matovu E, Moukhtar A, Neves L, Olet PA, Pagabeleguem S, Shereni W, Sorli B, Taioe MO, Tejedor Junco MT, Yagi R, Solano P, Cecchi G. The COMBAT project: controlling and progressively minimizing the burden of vector-borne animal trypanosomosis in Africa. OPEN RESEARCH EUROPE 2022; 2:67. [PMID: 37645305 PMCID: PMC10445831 DOI: 10.12688/openreseurope.14759.1] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 08/02/2022] [Indexed: 11/23/2023]
Abstract
Vector-borne diseases affecting livestock have serious impacts in Africa. Trypanosomosis is caused by parasites transmitted by tsetse flies and other blood-sucking Diptera. The animal form of the disease is a scourge for African livestock keepers, is already present in Latin America and Asia, and has the potential to spread further. A human form of the disease also exists, known as human African trypanosomosis or sleeping sickness. Controlling and progressively minimizing the burden of animal trypanosomosis (COMBAT) is a four-year research and innovation project funded by the European Commission, whose ultimate goal is to reduce the burden of animal trypanosomosis (AT) in Africa. The project builds on the progressive control pathway (PCP), a risk-based, step-wise approach to disease reduction or elimination. COMBAT will strengthen AT control and prevention by improving basic knowledge of AT, developing innovative control tools, reinforcing surveillance, rationalizing control strategies, building capacity, and raising awareness. Knowledge gaps on disease epidemiology, vector ecology and competence, and biological aspects of trypanotolerant livestock will be addressed. Environmentally friendly vector control technologies and more effective and adapted diagnostic tools will be developed. Surveillance will be enhanced by developing information systems, strengthening reporting, and mapping and modelling disease risk in Africa and beyond. The socio-economic burden of AT will be assessed at a range of geographical scales. Guidelines for the PCP and harmonized national control strategies and roadmaps will be developed. Gender equality and ethics will be pivotal in all project activities. The COMBAT project benefits from the expertise of African and European research institutions, national veterinary authorities, and international organizations. The project consortium comprises 21 participants, including a geographically balanced representation from 13 African countries, and it will engage a larger number of AT-affected countries through regional initiatives.
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Affiliation(s)
- Alain Boulangé
- CIRAD, UMR INTERTRYP, Bouaké, 01 BP 1500, Cote d'Ivoire
- CIRAD, IRD, INTERTRYP, Univ of Montpellier, Montpellier, F-34398, France
| | - Veerle Lejon
- CIRAD, IRD, UMR INTERTRYP, Univ of Montpellier, Montpellier, F-34398, France
| | - David Berthier
- CIRAD, IRD, INTERTRYP, Univ of Montpellier, Montpellier, F-34398, France
- CIRAD, UMR INTERTRYP, Montpellier, F-34398, France
| | - Sophie Thévenon
- CIRAD, IRD, INTERTRYP, Univ of Montpellier, Montpellier, F-34398, France
- CIRAD, UMR INTERTRYP, Montpellier, F-34398, France
| | - Geoffrey Gimonneau
- CIRAD, IRD, INTERTRYP, Univ of Montpellier, Montpellier, F-34398, France
- CIRAD, UMR INTERTRYP, Dakar-Hann, BP 2057, Senegal
| | - Marc Desquesnes
- CIRAD, IRD, INTERTRYP, Univ of Montpellier, Montpellier, F-34398, France
- CIRAD, UMR INTERTRYP, Toulouse, F-31076, France
| | - Samuel Abah
- Mission Spéciale D'Eradication des Glossines (MSEG), Ministère de l'Elevage, des Pêches et des Industries Animales, Ngaoundéré, BP 263, Cameroon
| | - Prudenciène Agboho
- Centre International de Recherche-Développement sur l’Elevage en zone Subhumide (CIRDES), Bobo-Dioulasso, 01 BP 454, Burkina Faso
| | - Kalinga Chilongo
- Tsetse and Trypanosomosis Control Unit (TTCU), Ministry of Fisheries and Livestock, P.O Box 50197, Lusaka, 10101, Zambia
| | - Tsegaye Gebre
- National Institute for Control and Eradication of Tsetse and Trypanosomosis (NICETT), P.O Box 19917, Addis Ababa, Ethiopia
| | - Assane Gueye Fall
- Institut Sénégalais de Recherches Agricoles (ISRA), Dakar-Hann, BP 2057, Senegal
| | - Dramane Kaba
- Institut Pierre Richet (IPR), Institut National de Santé Publique, Bouaké, 01 BP 1500, Cote d'Ivoire
| | - Stefan Magez
- Laboratory of Cellular and Molecular Immunology, Vrije Universiteit Brussel (VUB), Brussels, B-1050, Belgium
| | - Daniel Masiga
- International Centre of Insect Physiology and Ecology (ICIPE), Nairobi, 00100, Kenya
| | | | - Aldjibert Moukhtar
- Institut de Recherche en Elevage pour le Développement (IRED), N'Djamena, Route de Farcha, BP 433, Chad
| | - Luis Neves
- Centro de Biotecnologia, Universidade Eduardo Mondlane, Maputo, 00200, Mozambique
- Department of Veterinary Tropical Diseases, Faculty of Veterinary Sciences, University of Pretoria, Onderstepoort, 0110, South Africa
| | - Pamela A. Olet
- Kenya Tsetse and Trypanosomosis Eradication Council (KENTTEC), Nairobi, 00800, Kenya
| | - Soumaïla Pagabeleguem
- Insectarium de Bobo-Dioulasso – Campagne d'Eradication de la mouche Tsé-tsé et de la Trypanosomose (IBD-CETT), Ministère des ressources animales et halieutiques, Bobo-Dioulasso, 01 BP 1087, Burkina Faso
| | - William Shereni
- Division of Tsetse Control Services (TCD), Ministry of Lands, Agriculture, Fisheries, Water and Rural Development, P.O Box CY52, Harare, Zimbabwe
| | - Brice Sorli
- Institut d'Electronique et des Systèmes (IES), Université de Montpellier, Montpellier, F-34090, France
| | - Moeti O. Taioe
- Onderstepoort Veterinary Research, Agricultural Research Council (ARC), Pretoria, 0110, South Africa
| | | | - Rehab Yagi
- Central Veterinary Research Laboratory (CVRL), Animal Resources Research Corporation, Khartoum, 12217, Sudan
| | - Philippe Solano
- CIRAD, IRD, UMR INTERTRYP, Univ of Montpellier, Montpellier, F-34398, France
| | - Giuliano Cecchi
- Animal Production and Health Division, Food and Agriculture Organization of the United Nations (FAO), Rome, 00153, Italy
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Boulangé A, Lejon V, Berthier D, Thévenon S, Gimonneau G, Desquesnes M, Abah S, Agboho P, Chilongo K, Gebre T, Fall AG, Kaba D, Magez S, Masiga D, Matovu E, Moukhtar A, Neves L, Olet PA, Pagabeleguem S, Shereni W, Sorli B, Taioe MO, Tejedor Junco MT, Yagi R, Solano P, Cecchi G. The COMBAT project: controlling and progressively minimizing the burden of vector-borne animal trypanosomosis in Africa. OPEN RESEARCH EUROPE 2022; 2:67. [PMID: 37645305 PMCID: PMC10445831 DOI: 10.12688/openreseurope.14759.2] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 08/02/2022] [Indexed: 08/31/2023]
Abstract
Vector-borne diseases affecting livestock have serious impacts in Africa. Trypanosomosis is caused by parasites transmitted by tsetse flies and other blood-sucking Diptera. The animal form of the disease is a scourge for African livestock keepers, is already present in Latin America and Asia, and has the potential to spread further. A human form of the disease also exists, known as human African trypanosomosis or sleeping sickness. Controlling and progressively minimizing the burden of animal trypanosomosis (COMBAT) is a four-year research and innovation project funded by the European Commission, whose ultimate goal is to reduce the burden of animal trypanosomosis (AT) in Africa. The project builds on the progressive control pathway (PCP), a risk-based, step-wise approach to disease reduction or elimination. COMBAT will strengthen AT control and prevention by improving basic knowledge of AT, developing innovative control tools, reinforcing surveillance, rationalizing control strategies, building capacity, and raising awareness. Knowledge gaps on disease epidemiology, vector ecology and competence, and biological aspects of trypanotolerant livestock will be addressed. Environmentally friendly vector control technologies and more effective and adapted diagnostic tools will be developed. Surveillance will be enhanced by developing information systems, strengthening reporting, and mapping and modelling disease risk in Africa and beyond. The socio-economic burden of AT will be assessed at a range of geographical scales. Guidelines for the PCP and harmonized national control strategies and roadmaps will be developed. Gender equality and ethics will be pivotal in all project activities. The COMBAT project benefits from the expertise of African and European research institutions, national veterinary authorities, and international organizations. The project consortium comprises 21 participants, including a geographically balanced representation from 13 African countries, and it will engage a larger number of AT-affected countries through regional initiatives.
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Affiliation(s)
- Alain Boulangé
- CIRAD, UMR INTERTRYP, Bouaké, 01 BP 1500, Cote d'Ivoire
- CIRAD, IRD, INTERTRYP, Univ of Montpellier, Montpellier, F-34398, France
| | - Veerle Lejon
- CIRAD, IRD, UMR INTERTRYP, Univ of Montpellier, Montpellier, F-34398, France
| | - David Berthier
- CIRAD, IRD, INTERTRYP, Univ of Montpellier, Montpellier, F-34398, France
- CIRAD, UMR INTERTRYP, Montpellier, F-34398, France
| | - Sophie Thévenon
- CIRAD, IRD, INTERTRYP, Univ of Montpellier, Montpellier, F-34398, France
- CIRAD, UMR INTERTRYP, Montpellier, F-34398, France
| | - Geoffrey Gimonneau
- CIRAD, IRD, INTERTRYP, Univ of Montpellier, Montpellier, F-34398, France
- CIRAD, UMR INTERTRYP, Dakar-Hann, BP 2057, Senegal
| | - Marc Desquesnes
- CIRAD, IRD, INTERTRYP, Univ of Montpellier, Montpellier, F-34398, France
- CIRAD, UMR INTERTRYP, Toulouse, F-31076, France
| | - Samuel Abah
- Mission Spéciale D'Eradication des Glossines (MSEG), Ministère de l'Elevage, des Pêches et des Industries Animales, Ngaoundéré, BP 263, Cameroon
| | - Prudenciène Agboho
- Centre International de Recherche-Développement sur l’Elevage en zone Subhumide (CIRDES), Bobo-Dioulasso, 01 BP 454, Burkina Faso
| | - Kalinga Chilongo
- Tsetse and Trypanosomosis Control Unit (TTCU), Ministry of Fisheries and Livestock, P.O Box 50197, Lusaka, 10101, Zambia
| | - Tsegaye Gebre
- National Institute for Control and Eradication of Tsetse and Trypanosomosis (NICETT), P.O Box 19917, Addis Ababa, Ethiopia
| | - Assane Gueye Fall
- Institut Sénégalais de Recherches Agricoles (ISRA), Dakar-Hann, BP 2057, Senegal
| | - Dramane Kaba
- Institut Pierre Richet (IPR), Institut National de Santé Publique, Bouaké, 01 BP 1500, Cote d'Ivoire
| | - Stefan Magez
- Laboratory of Cellular and Molecular Immunology, Vrije Universiteit Brussel (VUB), Brussels, B-1050, Belgium
| | - Daniel Masiga
- International Centre of Insect Physiology and Ecology (ICIPE), Nairobi, 00100, Kenya
| | | | - Aldjibert Moukhtar
- Institut de Recherche en Elevage pour le Développement (IRED), N'Djamena, Route de Farcha, BP 433, Chad
| | - Luis Neves
- Centro de Biotecnologia, Universidade Eduardo Mondlane, Maputo, 00200, Mozambique
- Department of Veterinary Tropical Diseases, Faculty of Veterinary Sciences, University of Pretoria, Onderstepoort, 0110, South Africa
| | - Pamela A. Olet
- Kenya Tsetse and Trypanosomosis Eradication Council (KENTTEC), Nairobi, 00800, Kenya
| | - Soumaïla Pagabeleguem
- Insectarium de Bobo-Dioulasso – Campagne d'Eradication de la mouche Tsé-tsé et de la Trypanosomose (IBD-CETT), Ministère des ressources animales et halieutiques, Bobo-Dioulasso, 01 BP 1087, Burkina Faso
| | - William Shereni
- Division of Tsetse Control Services (TCD), Ministry of Lands, Agriculture, Fisheries, Water and Rural Development, P.O Box CY52, Harare, Zimbabwe
| | - Brice Sorli
- Institut d'Electronique et des Systèmes (IES), Université de Montpellier, Montpellier, F-34090, France
| | - Moeti O. Taioe
- Onderstepoort Veterinary Research, Agricultural Research Council (ARC), Pretoria, 0110, South Africa
| | | | - Rehab Yagi
- Central Veterinary Research Laboratory (CVRL), Animal Resources Research Corporation, Khartoum, 12217, Sudan
| | - Philippe Solano
- CIRAD, IRD, UMR INTERTRYP, Univ of Montpellier, Montpellier, F-34398, France
| | - Giuliano Cecchi
- Animal Production and Health Division, Food and Agriculture Organization of the United Nations (FAO), Rome, 00153, Italy
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7
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Jiao J, Qi Y, He P, Wan W, OuYang X, Yu Y, Wen B, Xiong X. Development of a Lateral Flow Strip-Based Recombinase-Aided Amplification for Active Chlamydia psittaci Infection. Front Microbiol 2022; 13:928025. [PMID: 35770169 PMCID: PMC9234530 DOI: 10.3389/fmicb.2022.928025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2022] [Accepted: 05/27/2022] [Indexed: 11/13/2022] Open
Abstract
Chlamydia psittaci is the causative agent of psittacosis, a worldwide zoonotic disease. A rapid, specific, and sensitive diagnostic assay would be benefit for C. psittaci infection control. In this study, an assay combining recombinase-aided amplification and a lateral flow strip (RAA-LF) for the detection of active C. psittaci infection was developed. The RAA-LF assay targeted the CPSIT_RS02830 gene of C. psittaci and could be accomplished in 15 min at a single temperature (39°C). The analytical sensitivity of the assay was as low as 1 × 100 copies/μl and no cross-reaction with some other intracellular pathogens was observed. Moreover, all feces samples from mice infected with C. psittaci at day-1 post-infection were positive in the RAA-LF assay. In conclusion, the RAA-LF assay provides a convenient, rapid, specific and sensitive method for detection of active C. psittaci infection and it is also suitable for C. psittaci detection in field.
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Affiliation(s)
- Jun Jiao
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China
| | - Yong Qi
- Huadong Research Institute for Medicine and Biotechniques, Nanjing, China
| | - Peisheng He
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China
| | - Weiqiang Wan
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China
| | - Xuan OuYang
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China
| | - Yonghui Yu
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China
| | - Bohai Wen
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China
| | - Xiaolu Xiong
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China
- *Correspondence: Xiaolu Xiong,
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8
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Nordstrom B, Mitchell N, Byrne M, Jarman S. A review of applications of environmental DNA for reptile conservation and management. Ecol Evol 2022; 12:e8995. [PMID: 35784065 PMCID: PMC9168342 DOI: 10.1002/ece3.8995] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2022] [Revised: 05/15/2022] [Accepted: 05/19/2022] [Indexed: 11/28/2022] Open
Abstract
Reptile populations are in decline globally, with total reptile abundance halving in the past half century, and approximately a fifth of species currently threatened with extinction. Research on reptile distributions, population trends, and trophic interactions can greatly improve the accuracy of conservation listings and planning for species recovery, but data deficiency is an impediment for many species. Environmental DNA (eDNA) can detect species and measure community diversity at diverse spatio‐temporal scales, and is especially useful for detection of elusive, cryptic, or rare species, making it potentially very valuable in herpetology. We aim to summarize the utility of eDNA as a tool for informing reptile conservation and management and discuss the benefits and limitations of this approach. A literature review was conducted to collect all studies that used eDNA and focus on reptile ecology, conservation, or management. Results of the literature search are summarized into key discussion points, and the review also draws on eDNA studies from other taxa to highlight methodological challenges and to identify future research directions. eDNA has had limited application to reptiles, relative to other vertebrate groups, and little use in regions with high species richness. eDNA techniques have been more successfully applied to aquatic reptiles than to terrestrial reptiles, and most (64%) of studies focused on aquatic habitats. Two of the four reptilian orders dominate the existing eDNA studies (56% Testudines, 49% Squamata, 5% Crocodilia, 0% Rhynchocephalia). Our review provides direction for the application of eDNA as an emerging tool in reptile ecology and conservation, especially when it can be paired with traditional monitoring approaches. Technologies associated with eDNA are rapidly advancing, and as techniques become more sensitive and accessible, we expect eDNA will be increasingly valuable for addressing key knowledge gaps for reptiles.
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Affiliation(s)
- Bethany Nordstrom
- School of Biological Sciences The University of Western Australia Crawley Western Australia Australia
| | - Nicola Mitchell
- School of Biological Sciences The University of Western Australia Crawley Western Australia Australia
| | - Margaret Byrne
- School of Biological Sciences The University of Western Australia Crawley Western Australia Australia
- Department of Biodiversity, Conservation and Attractions Biodiversity and Conservation Science Perth Western Australia Australia
| | - Simon Jarman
- School of Biological Sciences The University of Western Australia Crawley Western Australia Australia
- UWA Oceans Institute The University of Western Australia Crawley Western Australia Australia
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Molecular Analysis of Trypanosome Infections in Algerian Camels. Acta Parasitol 2022; 67:1246-1253. [PMID: 35657485 PMCID: PMC9399045 DOI: 10.1007/s11686-022-00577-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Accepted: 05/10/2022] [Indexed: 11/01/2022]
Abstract
PURPOSE Surra is an economically important livestock disease in many low- and middle-income countries, including those of Northern Africa. The disease is caused by the biting fly-transmitted subspecies Trypanosoma brucei evansi, which is very closely related to the tsetse-transmitted subspecies T. b. brucei and the sexually transmitted subspecies T. b. equiperdum. At least two phylogenetically distinct groups of T. b. evansi can be distinguished, called type A and type B. These evolved from T. b. brucei independently. The close relationships between the T. brucei subspecies and the multiple evolutionary origins of T. b. evansi pose diagnostic challenges. METHODS Here we use previously established and newly developed PCR assays based on nuclear and mitochondrial genetic markers to type the causative agent of recent trypanosome infections of camels in Southern Algeria. RESULTS/CONCLUSION We confirm that these infections have been caused by T. b. evansi type A. We also report a newly designed PCR assay specific for T. b. evansi type A that we expect will be of diagnostic use for the community.
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10
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Recombinase Polymerase Amplification Combined with Real-Time Fluorescent Probe for Mycoplasma pneumoniae Detection. J Clin Med 2022; 11:jcm11071780. [PMID: 35407388 PMCID: PMC9000086 DOI: 10.3390/jcm11071780] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2022] [Revised: 03/10/2022] [Accepted: 03/11/2022] [Indexed: 02/04/2023] Open
Abstract
Mycoplasma pneumoniae (M. pneumoniae) is one of the major causes of community-acquired pneumonia, accounting for 20-40% of total cases. Rapid and accurate detection of M. pneumoniae is crucial for the diagnosis and rational selection of antibiotics. In this study, we set up a real-time recombinase polymerase amplification (RPA) assay to detect the conserved gene CARDS of M. pneumoniae. The amplification can be finished in 20 min at a wide temperature range from 37-41 °C. The limit of detection of RPA assay was 10 fg per microliter. Cross-reaction with commonly detected respiratory pathogens was not observed using RPA assay. Among clinical sputum samples, the detection rate of RPA assay and real-time PCR assay was 48.4% (92/190) and 46.3% (88/190), respectively (p = 0.68). Therefore, the RPA assay for M. pneumoniae detection is rapid and easy to use and may serve as a promising test for early diagnosis of M. pneumoniae infection.
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Salivarian Trypanosomes Have Adopted Intricate Host-Pathogen Interaction Mechanisms That Ensure Survival in Plain Sight of the Adaptive Immune System. Pathogens 2021; 10:pathogens10060679. [PMID: 34072674 PMCID: PMC8229994 DOI: 10.3390/pathogens10060679] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Revised: 05/24/2021] [Accepted: 05/28/2021] [Indexed: 12/21/2022] Open
Abstract
Salivarian trypanosomes are extracellular parasites affecting humans, livestock and game animals. Trypanosoma brucei rhodesiense and Trypanosoma brucei gambiense are human infective sub-species of T. brucei causing human African trypanosomiasis (HAT—sleeping sickness). The related T. b. brucei parasite lacks the resistance to survive in human serum, and only inflicts animal infections. Animal trypanosomiasis (AT) is not restricted to Africa, but is present on all continents. T. congolense and T. vivax are the most widespread pathogenic trypanosomes in sub-Saharan Africa. Through mechanical transmission, T. vivax has also been introduced into South America. T. evansi is a unique animal trypanosome that is found in vast territories around the world and can cause atypical human trypanosomiasis (aHT). All salivarian trypanosomes are well adapted to survival inside the host’s immune system. This is not a hostile environment for these parasites, but the place where they thrive. Here we provide an overview of the latest insights into the host-parasite interaction and the unique survival strategies that allow trypanosomes to outsmart the immune system. In addition, we review new developments in treatment and diagnosis as well as the issues that have hampered the development of field-applicable anti-trypanosome vaccines for the implementation of sustainable disease control.
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12
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Boutellis A, Bellabidi M, Benaissa MH, Harrat Z, Brahmi K, Drali R, Kernif T. New Haplotypes of Trypanosoma evansi Identified in Dromedary Camels from Algeria. Acta Parasitol 2021; 66:294-302. [PMID: 33389544 DOI: 10.1007/s11686-020-00316-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2020] [Accepted: 11/13/2020] [Indexed: 11/30/2022]
Abstract
PURPOSE Surra is a zoonotic disease caused by Trypanosoma evansi (Trypanozoon), a salivary trypanosome native to Africa which affects a wide range of mammals worldwide and causes mortality and significant economic loss. The present study was devoted to the molecular characterization of T. evansi derived from naturally infected dromedary camels in Algeria. METHODS A total of 148 blood samples were collected from mixed age camels living in one of four geographic regions (Ouargla, El Oued, Biskra and Ghardaia) of Algeria. Samples underwent PCR amplification and sequencing of the internal transcribed spacer 1 (ITS1) complete sequence. RESULTS DNA of Trypanosoma spp. was found in 19 camels (12.84%). Trypanosoma spp. molecular positivity was not affected by sex (p = 0.50), age (p = 0.08), or geographic location (p = 0.12). Based on multiple sequence alignment of the obtained DNA sequences with representative T. evansi ITS1 sequences available globally, the Algerian sequences were grouped within four different haplotypes including two which were original. CONCLUSION Results of this study provide preliminary data on which future studies of genetic diversity and molecular epidemiology of T. evansi can be based.
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Affiliation(s)
- Amina Boutellis
- Laboratoire de Biodiversité Et Environnement: Interaction, Génomes, Faculté Des Sciences Biologiques, Université Des Sciences Et de La Technologie Houari Boumediene Bab Ezzouar, 16111, Algiers, Algeria
| | - Meriem Bellabidi
- Faculté Des Sciences de La Nature Et de La Vie, Laboratoire Des Bio Ressources Sahariennes, Université Kasdi Merbah Ouargla, 30000, Ouargla, Algeria
- Laboratoire D'Eco-Épidémiologie Parasitaire Et Génétique Des Populations, Institut Pasteur D'Algérie, 01 Rue du Petit Staouéli Dely-Brahim, 16302, Algiers, Algeria
| | - Mohammed Hocine Benaissa
- Centre de Recherche Scientifique Et Technique Sur Les Régions Arides (CRSTRA), 30002, Touggourt, Algeria
| | - Zoubir Harrat
- Laboratoire D'Eco-Épidémiologie Parasitaire Et Génétique Des Populations, Institut Pasteur D'Algérie, 01 Rue du Petit Staouéli Dely-Brahim, 16302, Algiers, Algeria
| | - Karima Brahmi
- Faculté Des Sciences Biologiques Et Des Sciences Agronomiques, Département de Biologie, Université Mouloud Mammeri, 15000, Tizi Ouzou, Algeria
| | - Rezak Drali
- Plateforme Génomique, Bioinformatique, Institut Pasteur D'Algérie, 16302, Algiers, Algeria
| | - Tahar Kernif
- Laboratoire D'Eco-Épidémiologie Parasitaire Et Génétique Des Populations, Institut Pasteur D'Algérie, 01 Rue du Petit Staouéli Dely-Brahim, 16302, Algiers, Algeria.
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Bushmeat Species Identification: Recombinase Polymerase Amplification (RPA) Combined with Lateral Flow (LF) Strip for Identification of Formosan Reeves' Muntjac ( Muntiacus reevesi micrurus). Animals (Basel) 2021; 11:ani11020426. [PMID: 33562213 PMCID: PMC7914887 DOI: 10.3390/ani11020426] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2021] [Accepted: 02/02/2021] [Indexed: 11/16/2022] Open
Abstract
Simple Summary Illegal hunting of wild animals and the consumption of bushmeat are recognized not only as a threat to biodiversity, but also as a risk for transmitting zoonotic diseases. Illegal sales of meat products from Formosan Reeves’ muntjac (Muntiacus reevesi micrurus) is a growing issue in Taiwan, bringing forth the demand for a fast and cost-effective technique for meat species identification. In this study, a new recombinase polymerase amplification combined with a lateral flow strip to identify Formosan Reeves’ muntjac in meat products was described. This method only requires minimal sample preparation and an isothermal heating process. The result can be interpreted by the naked eye within 30 min. The system we designed efficiently detected a variety of meat products, and no cross-reactions were observed with other animal species. This simple assay provides a sensitive and specific method to identify bushmeat sources in various meat products, which holds the potential for on-field application in the future. Abstract The identification of animal species of meat in meat products is of great concern for various reasons, such as public health, religious beliefs, food allergies, legal perspectives, and bushmeat control. In this study, we developed a new technique to identify Formosan Reeves’ muntjac in meat using recombinase polymerase amplification (RPA) in combination with a lateral flow (LF) strip. The DNA extracted from a piece of Formosan Reeves’ muntjac meat was amplified by a pair of specific primers based on its mitochondrial cytochrome b gene for 10 min at a constant temperature ranging from 30 to 45 °C using RPA. Using the specific probe added to the RPA reaction system, the amplified products were visualized on the LF strip within 5 min. The total operating time from quick DNA extraction to visualizing the result was approximately 30 min. The RPA-LF system we designed was efficient when using boiled, pan-fried, roasted, stir-fried, or stewed samples. The advantages of simple operation, speediness, and cost-effectiveness make our RPA-LF method a promising molecular detection tool for meat species identification of either raw or variously cooked Formosan Reeves’ muntjac meat. It is also possible to apply this method to identify the meat of other wildlife sources.
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An Unbiased Immunization Strategy Results in the Identification of Enolase as a Potential Marker for Nanobody-Based Detection of Trypanosoma evansi. Vaccines (Basel) 2020; 8:vaccines8030415. [PMID: 32722150 PMCID: PMC7565430 DOI: 10.3390/vaccines8030415] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Revised: 07/16/2020] [Accepted: 07/20/2020] [Indexed: 12/16/2022] Open
Abstract
Trypanosoma evansi is a widely spread parasite that causes the debilitating disease “surra” in several types of ungulates. This severely challenges livestock rearing and heavily weighs on the socio-economic development in the affected areas, which include countries on five continents. Active case finding requires a sensitive and specific diagnostic test. In this paper, we describe the application of an unbiased immunization strategy to identify potential biomarkers for Nanobody (Nb)-based detection of T. evansi infections. Alpaca immunization with soluble lysates from different T. evansi strains followed by panning against T. evansi secretome resulted in the selection of a single Nb (Nb11). By combining Nb11-mediated immuno-capturing with mass spectrometry, the T. evansi target antigen was identified as the glycolytic enzyme enolase. Four additional anti-enolase binders were subsequently generated by immunizing another alpaca with the recombinant target enzyme. Together with Nb11, these binders were evaluated for their potential use in a heterologous sandwich detection format. Three Nb pairs were identified as candidates for the further development of an antigen-based assay for Nb-mediated diagnosis of T. evansi infection.
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