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For: Goldar A, Marsolier-Kergoat MC, Hyrien O. Universal temporal profile of replication origin activation in eukaryotes. PLoS One 2009;4:e5899. [PMID: 19521533 DOI: 10.1371/journal.pone.0005899] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2009] [Accepted: 05/20/2009] [Indexed: 01/25/2023]  Open
Number Cited by Other Article(s)
1
Pflug FG, Bhat D, Pigolotti S. Genome replication in asynchronously growing microbial populations. PLoS Comput Biol 2024;20:e1011753. [PMID: 38181054 PMCID: PMC10796026 DOI: 10.1371/journal.pcbi.1011753] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 01/18/2024] [Accepted: 12/11/2023] [Indexed: 01/07/2024]  Open
2
Haccard O, Ciardo D, Narrissamprakash H, Bronchain O, Kumagai A, Dunphy WG, Goldar A, Marheineke K. Rif1 restrains the rate of replication origin firing in Xenopus laevis. Commun Biol 2023;6:788. [PMID: 37516798 PMCID: PMC10387115 DOI: 10.1038/s42003-023-05172-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Accepted: 07/24/2023] [Indexed: 07/31/2023]  Open
3
Birtwistle MR. Modeling the Dynamics of Eukaryotic DNA Synthesis in Remembrance of Tunde Ogunnaike. Ind Eng Chem Res 2023. [DOI: 10.1021/acs.iecr.2c02856] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
4
Rhind N. DNA replication timing: Biochemical mechanisms and biological significance. Bioessays 2022;44:e2200097. [PMID: 36125226 PMCID: PMC9783711 DOI: 10.1002/bies.202200097] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Revised: 08/31/2022] [Accepted: 09/02/2022] [Indexed: 12/27/2022]
5
Organization of DNA Replication Origin Firing in Xenopus Egg Extracts: The Role of Intra-S Checkpoint. Genes (Basel) 2021;12:genes12081224. [PMID: 34440398 PMCID: PMC8394201 DOI: 10.3390/genes12081224] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Revised: 08/02/2021] [Accepted: 08/04/2021] [Indexed: 12/11/2022]  Open
6
Wang W, Klein KN, Proesmans K, Yang H, Marchal C, Zhu X, Borrman T, Hastie A, Weng Z, Bechhoefer J, Chen CL, Gilbert DM, Rhind N. Genome-wide mapping of human DNA replication by optical replication mapping supports a stochastic model of eukaryotic replication. Mol Cell 2021;81:2975-2988.e6. [PMID: 34157308 DOI: 10.1016/j.molcel.2021.05.024] [Citation(s) in RCA: 45] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2020] [Revised: 03/08/2021] [Accepted: 05/20/2021] [Indexed: 12/27/2022]
7
Lee PH, Osley M. Chromatin structure restricts origin utilization when quiescent cells re-enter the cell cycle. Nucleic Acids Res 2021;49:864-878. [PMID: 33367871 PMCID: PMC7826286 DOI: 10.1093/nar/gkaa1148] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Revised: 11/04/2020] [Accepted: 12/21/2020] [Indexed: 12/12/2022]  Open
8
Zhao PA, Sasaki T, Gilbert DM. High-resolution Repli-Seq defines the temporal choreography of initiation, elongation and termination of replication in mammalian cells. Genome Biol 2020;21:76. [PMID: 32209126 PMCID: PMC7092589 DOI: 10.1186/s13059-020-01983-8] [Citation(s) in RCA: 68] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2020] [Accepted: 03/04/2020] [Indexed: 12/16/2022]  Open
9
Ciardo D, Goldar A, Marheineke K. On the Interplay of the DNA Replication Program and the Intra-S Phase Checkpoint Pathway. Genes (Basel) 2019;10:E94. [PMID: 30700024 PMCID: PMC6410103 DOI: 10.3390/genes10020094] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Revised: 01/23/2019] [Accepted: 01/25/2019] [Indexed: 12/12/2022]  Open
10
Arbona JM, Goldar A, Hyrien O, Arneodo A, Audit B. The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation. eLife 2018;7:35192. [PMID: 29856315 PMCID: PMC6033540 DOI: 10.7554/elife.35192] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2018] [Accepted: 05/31/2018] [Indexed: 01/22/2023]  Open
11
Iyer DR, Rhind N. Replication fork slowing and stalling are distinct, checkpoint-independent consequences of replicating damaged DNA. PLoS Genet 2017;13:e1006958. [PMID: 28806726 PMCID: PMC5570505 DOI: 10.1371/journal.pgen.1006958] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Revised: 08/24/2017] [Accepted: 08/04/2017] [Indexed: 11/30/2022]  Open
12
Gispan A, Carmi M, Barkai N. Model-based analysis of DNA replication profiles: predicting replication fork velocity and initiation rate by profiling free-cycling cells. Genome Res 2016;27:310-319. [PMID: 28028072 PMCID: PMC5287236 DOI: 10.1101/gr.205849.116] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2016] [Accepted: 12/12/2016] [Indexed: 12/24/2022]
13
Hyrien O. How MCM loading and spreading specify eukaryotic DNA replication initiation sites. F1000Res 2016;5. [PMID: 27635237 PMCID: PMC5007759 DOI: 10.12688/f1000research.9008.1] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 08/19/2016] [Indexed: 12/14/2022]  Open
14
Löb D, Lengert N, Chagin VO, Reinhart M, Casas-Delucchi CS, Cardoso MC, Drossel B. 3D replicon distributions arise from stochastic initiation and domino-like DNA replication progression. Nat Commun 2016;7:11207. [PMID: 27052359 PMCID: PMC4829661 DOI: 10.1038/ncomms11207] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2015] [Accepted: 03/02/2016] [Indexed: 01/02/2023]  Open
15
Deciphering DNA replication dynamics in eukaryotic cell populations in relation with their averaged chromatin conformations. Sci Rep 2016;6:22469. [PMID: 26935043 PMCID: PMC4776152 DOI: 10.1038/srep22469] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2015] [Accepted: 02/16/2016] [Indexed: 12/16/2022]  Open
16
Petryk N, Kahli M, d'Aubenton-Carafa Y, Jaszczyszyn Y, Shen Y, Silvain M, Thermes C, Chen CL, Hyrien O. Replication landscape of the human genome. Nat Commun 2016;7:10208. [PMID: 26751768 PMCID: PMC4729899 DOI: 10.1038/ncomms10208] [Citation(s) in RCA: 201] [Impact Index Per Article: 25.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2015] [Accepted: 11/13/2015] [Indexed: 12/21/2022]  Open
17
Platel M, Goldar A, Wiggins JM, Barbosa P, Libeau P, Priam P, Narassimprakash H, Grodzenski X, Marheineke K. Tight Chk1 Levels Control Replication Cluster Activation in Xenopus. PLoS One 2015;10:e0129090. [PMID: 26046346 PMCID: PMC4457610 DOI: 10.1371/journal.pone.0129090] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2015] [Accepted: 05/05/2015] [Indexed: 12/03/2022]  Open
18
Kaykov A, Nurse P. The spatial and temporal organization of origin firing during the S-phase of fission yeast. Genome Res 2015;25:391-401. [PMID: 25650245 PMCID: PMC4352884 DOI: 10.1101/gr.180372.114] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2014] [Accepted: 12/29/2014] [Indexed: 11/25/2022]
19
Embryonic stem cell specific "master" replication origins at the heart of the loss of pluripotency. PLoS Comput Biol 2015;11:e1003969. [PMID: 25658386 PMCID: PMC4319821 DOI: 10.1371/journal.pcbi.1003969] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2014] [Accepted: 10/06/2014] [Indexed: 11/29/2022]  Open
20
Flickinger RA. Possible role of H1 histone in replication timing. Dev Growth Differ 2014;57:1-9. [PMID: 25495214 DOI: 10.1111/dgd.12190] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2014] [Revised: 11/03/2014] [Accepted: 11/04/2014] [Indexed: 01/02/2023]
21
Zaghloul L, Drillon G, Boulos RE, Argoul F, Thermes C, Arneodo A, Audit B. Large replication skew domains delimit GC-poor gene deserts in human. Comput Biol Chem 2014;53 Pt A:153-65. [PMID: 25224847 DOI: 10.1016/j.compbiolchem.2014.08.020] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/11/2014] [Indexed: 01/25/2023]
22
Koren A. DNA replication timing: Coordinating genome stability with genome regulation on the X chromosome and beyond. Bioessays 2014;36:997-1004. [PMID: 25138663 DOI: 10.1002/bies.201400077] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
23
Skreti G, Bei ES, Kalantzaki K, Zervakis M. Temporal and Spatial Patterns of Gene Profiles during Chondrogenic Differentiation. IEEE J Biomed Health Inform 2014;18:799-809. [DOI: 10.1109/jbhi.2014.2305770] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
24
Gindin Y, Valenzuela MS, Aladjem MI, Meltzer PS, Bilke S. A chromatin structure-based model accurately predicts DNA replication timing in human cells. Mol Syst Biol 2014;10:722. [PMID: 24682507 PMCID: PMC4017678 DOI: 10.1002/msb.134859] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
25
Julienne H, Zoufir A, Audit B, Arneodo A. Human genome replication proceeds through four chromatin states. PLoS Comput Biol 2013;9:e1003233. [PMID: 24130466 PMCID: PMC3794905 DOI: 10.1371/journal.pcbi.1003233] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2013] [Accepted: 08/06/2013] [Indexed: 12/26/2022]  Open
26
Hyrien O, Rappailles A, Guilbaud G, Baker A, Chen CL, Goldar A, Petryk N, Kahli M, Ma E, d'Aubenton-Carafa Y, Audit B, Thermes C, Arneodo A. From simple bacterial and archaeal replicons to replication N/U-domains. J Mol Biol 2013;425:4673-89. [PMID: 24095859 DOI: 10.1016/j.jmb.2013.09.021] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2013] [Revised: 09/15/2013] [Accepted: 09/19/2013] [Indexed: 10/26/2022]
27
Koren A, McCarroll SA. Random replication of the inactive X chromosome. Genome Res 2013;24:64-9. [PMID: 24065775 PMCID: PMC3875862 DOI: 10.1101/gr.161828.113] [Citation(s) in RCA: 58] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
28
A pool of peptides extracted from wheat bud chromatin inhibits tumor cell growth by causing defective DNA synthesis. Cell Div 2013;8:11. [PMID: 23915323 PMCID: PMC3750333 DOI: 10.1186/1747-1028-8-11] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2013] [Accepted: 08/02/2013] [Indexed: 01/06/2023]  Open
29
Rhind N, Gilbert DM. DNA replication timing. Cold Spring Harb Perspect Biol 2013;5:a010132. [PMID: 23838440 DOI: 10.1101/cshperspect.a010132] [Citation(s) in RCA: 219] [Impact Index Per Article: 19.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
30
Supady A, Klipp E, Barberis M. A variable fork rate affects timing of origin firing and S phase dynamics in Saccharomyces cerevisiae. J Biotechnol 2013;168:174-84. [PMID: 23850861 DOI: 10.1016/j.jbiotec.2013.06.022] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2012] [Revised: 05/23/2013] [Accepted: 06/27/2013] [Indexed: 10/26/2022]
31
Audit B, Baker A, Chen CL, Rappailles A, Guilbaud G, Julienne H, Goldar A, d'Aubenton-Carafa Y, Hyrien O, Thermes C, Arneodo A. Multiscale analysis of genome-wide replication timing profiles using a wavelet-based signal-processing algorithm. Nat Protoc 2012;8:98-110. [PMID: 23237832 DOI: 10.1038/nprot.2012.145] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
32
Retkute R, Nieduszynski CA, de Moura A. Mathematical modeling of genome replication. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012;86:031916. [PMID: 23030953 PMCID: PMC3671344 DOI: 10.1103/physreve.86.031916] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2012] [Revised: 08/15/2012] [Indexed: 06/01/2023]
33
Demczuk A, Gauthier MG, Veras I, Kosiyatrakul S, Schildkraut CL, Busslinger M, Bechhoefer J, Norio P. Regulation of DNA replication within the immunoglobulin heavy-chain locus during B cell commitment. PLoS Biol 2012;10:e1001360. [PMID: 22807655 PMCID: PMC3393677 DOI: 10.1371/journal.pbio.1001360] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2012] [Accepted: 05/30/2012] [Indexed: 12/03/2022]  Open
34
Gidvani RD, Sudmant P, Li G, DaSilva LF, McConkey BJ, Duncker BP, Ingalls BP. A quantitative model of the initiation of DNA replication in Saccharomyces cerevisiae predicts the effects of system perturbations. BMC SYSTEMS BIOLOGY 2012;6:78. [PMID: 22738223 PMCID: PMC3439281 DOI: 10.1186/1752-0509-6-78] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/07/2012] [Accepted: 06/05/2012] [Indexed: 11/17/2022]
35
Bechhoefer J, Rhind N. Replication timing and its emergence from stochastic processes. Trends Genet 2012;28:374-81. [PMID: 22520729 DOI: 10.1016/j.tig.2012.03.011] [Citation(s) in RCA: 68] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2012] [Revised: 03/21/2012] [Accepted: 03/22/2012] [Indexed: 01/28/2023]
36
Baker A, Audit B, Chen CL, Moindrot B, Leleu A, Guilbaud G, Rappailles A, Vaillant C, Goldar A, Mongelard F, d'Aubenton-Carafa Y, Hyrien O, Thermes C, Arneodo A. Replication fork polarity gradients revealed by megabase-sized U-shaped replication timing domains in human cell lines. PLoS Comput Biol 2012;8:e1002443. [PMID: 22496629 PMCID: PMC3320577 DOI: 10.1371/journal.pcbi.1002443] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2011] [Accepted: 02/09/2012] [Indexed: 12/26/2022]  Open
37
Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome. PLoS Comput Biol 2011;7:e1002322. [PMID: 22219720 PMCID: PMC3248390 DOI: 10.1371/journal.pcbi.1002322] [Citation(s) in RCA: 117] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2011] [Accepted: 11/07/2011] [Indexed: 12/28/2022]  Open
38
Ma E, Hyrien O, Goldar A. Do replication forks control late origin firing in Saccharomyces cerevisiae? Nucleic Acids Res 2011;40:2010-9. [PMID: 22086957 PMCID: PMC3300028 DOI: 10.1093/nar/gkr982] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
39
Herrick J. Genetic variation and DNA replication timing, or why is there late replicating DNA? Evolution 2011;65:3031-47. [PMID: 22023572 DOI: 10.1111/j.1558-5646.2011.01407.x] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
40
Yang SCH, Rhind N, Bechhoefer J. Modeling genome-wide replication kinetics reveals a mechanism for regulation of replication timing. Mol Syst Biol 2011;6:404. [PMID: 20739926 PMCID: PMC2950085 DOI: 10.1038/msb.2010.61] [Citation(s) in RCA: 80] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2009] [Accepted: 07/16/2010] [Indexed: 11/09/2022]  Open
41
Lee TJ, Pascuzzi PE, Settlage SB, Shultz RW, Tanurdzic M, Rabinowicz PD, Menges M, Zheng P, Main D, Murray JAH, Sosinski B, Allen GC, Martienssen RA, Hanley-Bowdoin L, Vaughn MW, Thompson WF. Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state. PLoS Genet 2010;6:e1000982. [PMID: 20548960 PMCID: PMC2883604 DOI: 10.1371/journal.pgen.1000982] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2010] [Accepted: 05/12/2010] [Indexed: 12/23/2022]  Open
42
Raghuraman MK, Brewer BJ. Molecular analysis of the replication program in unicellular model organisms. Chromosome Res 2010;18:19-34. [PMID: 20012185 DOI: 10.1007/s10577-009-9099-x] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
43
S-phase progression in mammalian cells: modelling the influence of nuclear organization. Chromosome Res 2010;18:163-78. [PMID: 20155315 DOI: 10.1007/s10577-010-9114-2] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
44
Hyrien O, Goldar A. Mathematical modelling of eukaryotic DNA replication. Chromosome Res 2010;18:147-61. [PMID: 20205354 DOI: 10.1007/s10577-009-9092-4] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
45
Reconciling stochastic origin firing with defined replication timing. Chromosome Res 2010;18:35-43. [PMID: 20205352 DOI: 10.1007/s10577-009-9093-3] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
46
de Moura APS, Retkute R, Hawkins M, Nieduszynski CA. Mathematical modelling of whole chromosome replication. Nucleic Acids Res 2010;38:5623-33. [PMID: 20457753 PMCID: PMC2943597 DOI: 10.1093/nar/gkq343] [Citation(s) in RCA: 80] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]  Open
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Herrick J. The dynamic replicon: adapting to a changing cellular environment. Bioessays 2010;32:153-64. [DOI: 10.1002/bies.200900129] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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