Diversification and species boundaries of Rhinebothrium (Cestoda; Rhinebothriidea) in South American freshwater stingrays (Batoidea; Potamotrygonidae)

Diversity and ecological relationships of Cestoda and parasites of freshwater stingrays (Myliobatiformes, Potamotrygonidae), in the upper Paraná River, Brazil

The Neotropical freshwater stingrays of Potamotrygon genus present a unique and complex natural history and biogeographical pattern that can be traced to a marine origin and the colonization of the continental environment during the Miocene. During the evolution of potamotrygonids, several species of the parasitic fauna coevolved and co-opted concomitantly to their hosts during the colonization of the new environments. One striking example can be observed during the colonization of the upper Paraná River region. However, few studies explored the ecological and taxonomic aspects of potamotrygonid parasites. In this work, we investigate aspects of the ecology and taxonomy of the species of Monogenea and Cestoda that are parasites the species of freshwater stingrays of the genus Potamotrygon in the upper Paraná River. Our results indicate that at least six species of parasites are present in potamotrygonids in the region. Two of the observed parasites are putative new species and three of the parasitic species were identified for the first time in the region, hence expanding their geographic distributions. We quantified ecological aspects at different levels of communities for the collected parasite species. We compared the diversity in different locations and hosts and performed an exploratory analysis to investigate the differences in parasite abundance. Additionally, an identification key for the Monogenea and Cestoda species of the sampled region is provided.

Cestodes of Pseudobatos horkelii (Mller and Henle) (Rhinopristiformes) including Rhinebothrium quequense n. sp. (Rhinebothriidea) and Caulobothrium pieroi n. sp. (Tetraphyllidea) from the southwestern Atlantic

Two new species of cestodes were described from the Brazilian guitarfish, Pseudobatos horkelii (Mller and Henle) (Rhinopristiformes: Rhinobatidae), from coastal waters off Argentina in the southwestern Atlantic Ocean. Rhinebothrium quequense n. sp. (Rhinebothriidea) differs from its congeners by a combination of morphological characters, including the total number of loculi, the absence of loculi at the level of bothridial constriction, the number of testes per proglottid, and the number of proglottids per worm. Caulobothrium pieroi n. sp. (Tetraphyllidea) can be distinguished from the other members of the genus by the following set of morphological features including the presence of stalked bothridia with apical sucker, the number of loculi per bothridium, the number of testes per proglottid, and the number of proglottids per worm. The discovery of R. quequense n. sp. and C. pieroi n. sp. in the Brazilian guitarfish not only increases the number of rhinebothriideans and tetraphyllideans in the southwestern Atlantic, but also expands the elasmobranchs list to include P. horkelii for the first time as a new host record for cestodes globally. In addition, this is not only the first report of a species of Rhinebothrium in rhinobatids in the region, but it is also the first Caulobothrium species infecting a rhinopristiform batoid.

Gut microbiota of an Amazonian fish in a heterogeneous riverscape: integrating genotype, environment, and parasitic infections

A number of key factors can structure the gut microbiota of fish such as environment, diet, health state, and genotype. Mesonauta festivus, an Amazonian cichlid, is a relevant model organism to study the relative contribution of these factors on the community structure of fish gut microbiota. M. festivus has well-studied genetic populations and thrives in rivers with drastically divergent physicochemical characteristics. Here, we collected 167 fish from 12 study sites and used 16S and 18S rRNA metabarcoding approaches to characterize the gut microbiome structure of M. festivus. These data sets were analyzed in light of the host fish genotypes (genotyping-by-sequencing) and an extensive characterization of environmental physico-chemical parameters. We explored the relative contribution of environmental dissimilarity, the presence of parasitic taxa, and phylogenetic relatedness on structuring the gut microbiota. We documented occurrences of Nyctotherus sp. infecting a fish and linked its presence to a dysbiosis of the host gut microbiota. Moreover, we detected the presence of helminths which had a minor impact on the gut microbiota of their host. In addition, our results support a higher impact of the phylogenetic relatedness between fish rather than environmental similarity between sites of study on structuring the gut microbiota for this Amazonian cichlid. Our study in a heterogeneous riverscape integrates a wide range of factors known to structure fish gut microbiomes. It significantly improves understanding of the complex relationship between fish, their parasites, their microbiota, and the environment. IMPORTANCE The gut microbiota is known to play important roles in its host immunity, metabolism, and comportment. Its taxonomic composition is modulated by a complex interplay of factors that are hard to study simultaneously in natural systems. Mesonauta festivus, an Amazonian cichlid, is an interesting model to simultaneously study the influence of multiple variables on the gut microbiota. In this study, we explored the relative contribution of the environmental conditions, the presence of parasitic infections, and the genotype of the host on structuring the gut microbiota of M. festivus in Amazonia. Our results highlighted infections by a parasitic ciliate that caused a disruption of the gut microbiota and by parasitic worms that had a low impact on the microbiota. Finally, our results support a higher impact of the genotype than the environment on structuring the microbiota for this fish. These findings significantly improve understanding of the complex relationship among fish, their parasites, their microbiota, and the environment.

Tapeworms (Platyhelminthes, Cestoda) from marine chondrichthyans of the Southwestern Atlantic Ocean, and the sub-Antarctic and Antarctic islands: a checklist

A parasite-host list of cestodes parasitizing chondrichthyans in the Southwest Atlantic off Argentina and surrounding waters of Antarctica is compiled based on the available literature. The list is based on published descriptions and redescriptions of species, and newly collected worms during the current study. A total of 57 valid species belonging to 28 genera of the orders Cathetocephalidea, Diphyllidea, Gyrocotylidea, Lecanicephalidea, Onchoproteocephalidea, Phyllobothriidea, Rhinebothriidea, "Tetraphyllidea", and Trypanorhyncha is listed. Information on hosts, localities, specimens in collections and comments on tapeworms are also included. A host-parasite list including chimaeras (1 order, 1 genus), batoids (4 orders, 10 genera), and sharks (3 orders, 5 genera) is provided. Tapeworm diversity, distribution range, and host associations are discussed. The cestodes orders Phyllobothriidea and Rhinebothriidea exhibit the highest species richness, with 13 and 12 species, respectively. Onchoproteocephalideans and rhinebothriideans have the broadest geographic distribution in the study area. Regarding hosts, arhynchobatid skates are the group most frequently associated with cestodes. However, further collecting efforts are necessary to understand whether this data reflect the real diversity and host association of these parasites or is a result of a bias in sampling.

Fish tapeworms (Cestoda) in the molecular era: achievements, gaps and prospects

The tapeworms of fishes (Chondrichthyes and Actinopterygii) account one-third (1670 from around 5000) of the total tapeworm (Platyhelminthes: Cestoda) species diversity. In total 1186 species from 9 orders occur as adults in elasmobranchs (sharks, rays and chimaeras), and 484 species from 8 orders mature in ray-finned fishes (referred to here as teleosts). Teleost tapeworms are dominated by freshwater species (78%), but only 3% of elasmobranch tapeworms are known from freshwater rays of South America and Asia (Borneo). In the last 2 decades, vast progress has been made in understanding species diversity, host associations and interrelationships among fish tapeworms. In total, 172 new species have been described since 2017 (149 from elasmobranchs and 23 from teleosts; invalidly described taxa are not included, especially those from the Oriental region). Molecular data, however, largely limited to a few molecular markers (mainly 28S rDNA, but also 18S and cox1), are available for about 40% of fish tapeworm species. They allowed us to significantly improve our understanding of their interrelationships, including proposals of a new, more natural classification at the higher-taxonomy level (orders and families) as well as at the lower-taxonomy level (genera). In this review, we summarize the main advances and provide perspectives for future research.

Comparative Characterization of Mitogenomes From Five Orders of Cestodes (Eucestoda: Tapeworms)

The recognized potential of using mitogenomics in phylogenetics and the more accessible use of high-throughput sequencing (HTS) offer an opportunity to investigate groups of neglected organisms. Here, we leveraged HTS to execute the most comprehensive documentation of mitogenomes for cestodes based on the number of terminals sequenced. We adopted modern approaches to obtain the complete mitogenome sequences of 86 specimens representing five orders of cestodes (three reported for the first time: Phyllobothriidea, “Tetraphyllidea” and Trypanorhyncha). These complete mitogenomes represent an increase of 41% of the mitogenomes available for cestodes (61–147) and an addition of 33% in the representativeness of the cestode orders. The complete mitochondrial genomes are conserved, circular, encoded in the same strand, and transcribed in the same direction, following the pattern observed previously for tapeworms. Their length varies from 13,369 to 13,795 bp, containing 36 genes in total. Except for the Trypanorhyncha specimen, the gene order of the other four cestode orders sequenced here suggests that it could be a synapomorphy for the acetabulate group (with a reversion for taenids). Our results also suggest that no single gene can tell all the evolutionary history contained in the mitogenome. Therefore, cestodes phylogenies based on a single mitochondrial marker may fail to capture their evolutionary history. We predict that such phylogenies would be improved if conducted under a total evidence framework. The characterization of the new mitochondrial genomes is the first step to provide a valuable resource for future studies on the evolutionary relationships of these groups of parasites.

Two new species of Scalithrium (Cestoda: Rhinebothriidea) from rajiform batoids of the Argentine Sea

Two new species of Scalithrium Ball, Neifar Euzet, 2003 were found in rajiform batoids of the Argentine Sea: Scalithrium kirchneri sp. nov., parasite of the Rio skate Rioraja agassizii (Mller Henle) from waters off Buenos Aires Province, and Scalithrium ivanovae sp. nov., parasite of the La Plata skate Atlantoraja platana (Gnther) from waters off Ro Negro Province. Scalithrium kirchneri sp. nov. and S. ivanovae sp. nov. differ from their congeners by having a particular combination of features including: total length, number of loculi on the distal bothridial surface, absence of bilobed bothridia and number of testes. Additionally, S. kirchneri sp. nov. can be distinguished from S. ivanovae sp. nov. by the presence of a vaginal sphincter and seminal receptacle, by the position of the entrance of the vas deferens into the cirrus sac, and by the microthrix pattern on the proximal bothridial surface. Based on this and previous studies, we conclude that some morphological traits may not be considered as key characters for the generic diagnosis of Scalithrium due to their variability within the genus. These characters include the musculature disposition in bothridial transverse septa and position of the entrance of the vas deferens into the cirrus sac, which certainly complement other diagnostic characters at a specific level. The discovery of these two species represents the first record of the genus Scalithrium in temperate waters of the Southern Hemisphere. In addition, this study is the first to undoubtedly identify batoids from the order Rajiformes as hosts for Scalithrium.

Three New Species of Rhinebothrium (Cestoda: Rhinebothriidea) from the Leopard Whipray, Himantura Leoparda, in Australia

Examination of 4 specimens of the leopard whipray Himantura leoparda, a dasyatid stingray from northern Australia, led to the discovery of 3 new species of Rhinebothrium. Rhinebothrium leopardensis n. sp., Rhinebothrium nandoi n. sp., and Rhinebothrium ruhnkei n. sp. are described, increasing the diversity of the genus to 51 species globally. All 3 new species differ from their congeners in terms of testis number, proglottid number, loculus number, and size. With respect to one another, R. leopardensis n. sp. has bothridia that are weakly constricted at their centers and has a greater number of proglottids than the other 2 species (93-108 vs. 11-15, and 48-78, respectively). Rhinebothrium nandoi n. sp. is the smallest of the 3 species found in H. leoparda (3.6-5 vs. 10-15 mm and 10.1-15.8 mm in total length [TL], respectively) and bears bothridia that are constricted at their centers. Rhinebothrium ruhnkei n. sp. bears bothridia that are conspicuously constricted at their centers and has more testes than R. leopardensis and fewer than R. nandoi (7-10 vs. fewer than 7 and 21-33, respectively). Before this study, 56% (27 of 48) of Rhinebothrium species had been described from the freshwater river systems of South America and the marine waters surrounding South and North America. In contrast, despite the remarkably diverse nature of its batoid fauna, only 19 species were known from the Indo-Pacific region. Our work increases this number to 22, emphasizing the highly underestimated nature of Rhinebothrium diversity in this region of the globe. The discovery of these 3 new species was not unexpected, given the relatively poor status of our current knowledge of the cestode faunas of dasyatid stingrays in the Indo-Pacific region, and given the fact that it is common for a single batoid species to host 2 or more species of Rhinebothrium. Our results suggest that additional work on the cestode faunas of the batoids, especially dasyatids, from the Indo-Pacific region is likely to be highly productive in terms of contributing to the knowledge of Rhinebothrium diversity.

The First Report and Description of a New Species of Rhinebothrium from a Dasyatid Stingray from the Brazilian Northeastern Coast with a Review of the Distribution of the Genus throughout Endemic Marine Ecoregions

Here we describe a new species of RhinebothriumLinton, 1890, from Hypanus guttatus (Bloch and Schneider). Rhinebothrium ramosi n. sp. can be differentiated from all 51 valid species of the genus by having 4-5 testes and uterus that extends throughout the entire length of the proglottid. Only 8 of the above species closely resemble R. ramosi in total length (Rhinebothrium bunburyense, Rhinebothrium chollaense, Rhinebothrium corbatai, Rhinebothrium dasyatidis, Rhinebothrium kruppi, Rhinebothrium lintoni, Rhinebothrium margaritense, and Rhinebothrium reydai). Despite the resemblance, R. bunburyense, R. corbatai, R. dasyatidis, R. lintoni, and R. margaritense can be distinguished from the new species by possessing a larger number of proglottids. The remaining 3 species (R. chollaense, R. kruppi, and R. reydai) overlap in total length and number of proglottids with R. ramosi. However, they can be distinguished from the new species by possessing a single posterior-most bothridial loculus instead of arranged as a pair, as found in the new species. This is the first report of the genus from the coastal waters of Brazil and brings to 52 the number of valid species for this genus. Additionally, we use the patterns of infection and distribution for species of Rhinebothrium to make predictions of expected diversity within the genus, especially for unsurveyed hosts in endemic marine ecoregions of the world.

Systematics and diversification of Anindobothrium Marques, Brooks & Lasso, 2001 (Eucestoda: Rhinebothriidea)

Tapeworms of the genus Anindobothrium Marques, Brooks & Lasso, 2001 are found in both marine and Neotropical freshwater stingrays of the family Potamotrygonidae. The patterns of host association within the genus support the most recent hypothesis about the history of diversification of potamotrygonids, which suggests that the ancestor of freshwater lineages of the Potamotrygonidae colonized South American river systems through marine incursion events. Despite the relevance of the genus Anindobothrium to understand the history of colonization and diversification of potamotrygonids, no additional efforts were done to better investigate the phylogenetic relationship of this taxon with other lineages of cestodes since its erection. This study is a result of recent collecting efforts to sample members of the genus in marine and freshwater potamotrygonids that enabled the most extensive documentation of the fauna of Anindobothrium parasitizing species of Styracura de Carvalho, Loboda & da Silva, Potamotrygon schroederi Fernández-Yépez, P. orbignyi (Castelnau) and P. yepezi Castex & Castello from six different countries, representing the eastern Pacific Ocean, Caribbean Sea, and river basins in South America (Rio Negro, Orinoco, and Maracaibo). The newly collected material provided additional specimens for morphological studies and molecular samples for subsequent phylogenetic analyses that allowed us to address the phylogenetic position of Anindobothrium and provide molecular and morphological evidence to recognize two additional species for the genus. The taxonomic actions that followed our analyses included the proposition of a new family, Anindobothriidae fam. n., to accommodate the genus Anindobothrium in the order Rhinebothriidea Healy, Caira, Jensen, Webster & Littlewood, 2009 and the description of two new species-one from the eastern Pacific Ocean, A. carrioni sp. n., and the other from the Caribbean Sea, A. inexpectatum sp. n. In addition, we also present a redescription of the type species of the genus, A. anacolum (Brooks, 1977) Marques, Brooks & Lasso, 2001, and of A. lisae Marques, Brooks & Lasso, 2001. Finally, we discuss the paleogeographical events mostly linked with the diversification of the genus and the protocols adopted to uncover cryptic diversity in Anindobothrium.

Annotated checklist of fish cestodes from South America

An exhaustive literature search supplemented by a critical examination of records made it possible to present an annotated checklist of tapeworms (Cestoda) that, as adults or larvae (metacestodes), parasitize freshwater, brackish water and marine fishes, i.e. cartilaginous and bony fishes, in South America. The current knowledge of their species diversity, host associations and geographical distribution is reviewed. Taxonomic problems are discussed based on a critical evaluation of the literature and information on DNA sequences of individual taxa is provided to facilitate future taxonomic and phylogenetic studies. As expected, the current knowledge is quite uneven regarding the number of taxa and host-associations reported from the principal river basins and marine ecoregions. These differences may not only reflect the actual cestode richness but may also be due to the research effort that has been devoted to unravelling the diversity of these endoparasitic helminths in individual countries. A total of 297 valid species, 61 taxa identified to the generic level, in addition to unidentified cestodes, were recorded from 401 species of fish hosts. Among the recognized cestode orders, 13 have been recorded in South America, with the Onchoproteocephalidea displaying the highest species richness, representing c. 50% of all species diversity. The majority of records include teleost fish hosts (79%) that harbour larval and adult stages of cestodes, whereas stingrays (Myliobatiformes) exhibit the highest proportion of records (39%) among the elasmobranch hosts. Fish cestodes are ubiquitous in South America, being mostly recorded from the Warm Temperate Southeastern Pacific (WTSP; 31%) for marine hosts and the Amazon River basin (45%) for freshwater ones. The following problems were detected during the compilation of literary data: (i) unreliability of many records; (ii) poor taxonomic resolution, i.e. identification made only to the genus or even family level; (iii) doubtful host identification; and (iv) the absence of voucher specimens that would enable us to verify identification. It is thus strongly recommended to always deposit representative specimens in any type of studies, including faunal surveys and ecological studies. An analysis of the proportion of three basic types of studies, i.e. surveys, taxonomic and ecological papers, has shown a considerable increase of ecological studies over the last decade.

A new genus of rhinebothriidean cestodes from batoid elasmobranchs, with the description of five new species and two new combinations

Survey work of batoid elasmobranchs in the eastern Atlantic and Indo-Pacific revealed multiple species of a new genus of cestode. Stillabothrium Healy et Reyda gen. n. (Rhinebothriidea: Escherbothriidae) is unique in its possession of an even number of non-medial longitudinal septa in the posterior portion of the bothridia, resulting in a series of loculi that are longer than wide (i.e. vertically oriented) and are arranged in columns. Five new species of Stillabothrium are described, S. ashleyae Willsey et Reyda sp. n., S. davidcynthiaorum Daigler et Reyda sp. n., S. campbelli Delgado, Dedrick et Reyda sp. n., S. hyphantoseptum Herzog, Bergman et Reyda sp. n., S. jeanfortiae Forti, Aprill et Reyda sp. n., and two species are formally transferred to the genus, S. amuletum (Butler, 1987) comb. n., and S. cadenati (Euzet, 1954) comb. n., the latter of which is redescribed. The species differ in the configuration of the other bothridial septa and in proglottid anatomy. Species of Stillabothrium were found parasitising a total of 17 species of batoid elasmobranchs of the genera Dasyatis Rafinesque, Glaucostegus Bonaparte, Himantura Müller et Henle, Pastinachus Rüppell, Rhinobatos Linck and Zanobatus Garman, including several host species that are likely new to science. A phylogenetic hypothesis based on Bayesian analysis of 1 084 aligned positions of the D1-D3 region of 28S rDNA for 27 specimens representing 10 species of Stillabothrium and two outgroup species supported the monophyly of Stillabothrium. These results also supported morphologically determined species boundaries in all cases in which more than one specimen of a putative species was included in the analysis. Host specificity appears to vary across species of Stillabothrium, with the number of host species parasitised by each species of Stillabothrium ranging from one to four. The geographic distribution of species of Stillabothrium spans the eastern Hemisphere, including the eastern Atlantic (coastal Senegal) and several locations in the Indo-Pacific (coastal Vietnam, Borneo and Australia). In addition, Phyllobothrium biacetabulatum Yamaguti, 1960 is formally transferred into family Escherbothriidae, although its generic placement remains uncertain (species incertae sedis).

Two new species of Rhinebothrium (Cestoda: Rhinebothriidea) from granulated guitarfish Glaucostegusgranulatus in the Gulf of Oman

During a study of the rhinebothriideans of rays in the Gulf of Oman, two new species of Rhinebothrium Linton, 1890, Rhinebothrium kruppi sp. n. and R. persicum sp. n., were identified in Glaucostegus granulatus (Cuvier). Some significant features that distinguish R.kruppi sp. n. from R. persicum sp. n. include: scolex characteristics (hinged with 42–46 loculi vs. fusiform with 68–62 loculi), number of testes (4–5 vs. 20–27), genital pore position (61.1–76.9% of proglottid length vs. 47.2–63.3%), ovarian morphology (lobulated vs. follicular), cirrus-sac expansion (past midline of proglottid vs. limited to poral side of proglottid), vas deferens configuration (spanning posteriorly to near ovarian isthmus vs. to the level of ovarian anterior margins) and details of microthrix morphology. In addition, a combination of the aforementioned characteristics can be used to distinguish these two new species from other valid species of Rhinebothrium. These are the first species of rhinebothriidean cestodes to be described systematically from the Gulf of Oman, Iran. The two new species reported here increase the number of valid species of Rhinebothrium to 43.