Local competition and metapopulation processes drive long-term seagrass-epiphyte population dynamics

Environment predicts seagrass genotype, phenotype, and associated biodiversity in a temperate ecosystem

Coastal vegetative ecosystems are among the most threatened in the world, facing multiple anthropogenic stressors. A good example of this is seagrass, which supports carbon capture, coastal stabilization, and biodiversity, but is declining globally at an alarming rate. To understand the causes and consequences of changes to these ecosystems, we need to determine the linkages between different biotic and abiotic components. We used data on the seagrass, Zostera marina, collected by citizen scientists across 300 km of the south coast of the United Kingdom as a case study. We assembled data on seagrass genotype, phenotype, infauna, and associated bathymetry, light, sea surface temperature, and wave and current energy to test hypotheses on the distribution and diversity of this temperate sub-tidal ecosystem. We found spatial structure in population genetics, evident through local assortment of genotypes and isolation by distance across a broader geographic scale. By integrating our molecular data with information on seagrass phenotype and infauna, we demonstrate that these ecosystem components are primarily linked indirectly through the effects of shared environmental factors. It is unusual to examine genotypic, phenotypic, and environmental data in a single study, but this approach can inform both conservation and restoration of seagrass, as well as giving new insights into a widespread and important ecosystem.

Heterogeneity within and among co-occurring foundation species increases biodiversity

Habitat heterogeneity is considered a primary causal driver underpinning patterns of diversity, yet the universal role of heterogeneity in structuring biodiversity is unclear due to a lack of coordinated experiments testing its effects across geographic scales and habitat types. Furthermore, key species interactions that can enhance heterogeneity, such as facilitation cascades of foundation species, have been largely overlooked in general biodiversity models. Here, we performed 22 geographically distributed experiments in different ecosystems and biogeographical regions to assess the extent to which variation in biodiversity is explained by three axes of habitat heterogeneity: the amount of habitat, its morphological complexity, and capacity to provide ecological resources (e.g. food) within and between co-occurring foundation species. We show that positive and additive effects across the three axes of heterogeneity are common, providing a compelling mechanistic insight into the universal importance of habitat heterogeneity in promoting biodiversity via cascades of facilitative interactions. Because many aspects of habitat heterogeneity can be controlled through restoration and management interventions, our findings are directly relevant to biodiversity conservation.

Species interactions that can enhance habitat heterogeneity such as facilitation cascades of foundation species have been overlooked in biodiversity models. This study conducted 22 geographically distributed experiments in different ecosystems and biogeographical regions to assess the extent to which biodiversity is explained by three axes of habitat heterogeneity in facilitation cascades.

The Second Skin of Seagrass Leaves: A Comparison of Microalgae Epiphytic Communities Between Two Different Species Across Two Seagrass Meadows in Lesser Sunda Islands

Epiphytes as the important features in the seagrass ecosystems have been studied widely, and their functions as a primary producer, influence rates of herbivory grazer, and prevent seagrass leaf from desiccation is well known. However, patterns and distribution among seagrasses especially in Indonesia, which was known as hotspot marine biodiversity is not well understood. Therefore, this study aimed to examined epiphytic assemblages on two seagrass species with different morphological and longevity, Enhalus acoroides and Cymodocea rotundata, in two different meadows (conservation area and non-conservation area) in Lesser Sunda Islands (Bali and Lombok). A total of 22 taxa of microalgae epiphytes species were identified from eight sites and 2 different species of seagrass. The highest number of collected species between class was from Bacillariophyceae (18), followed by Cyanophyceae (3) and Fragilariophyceae (1). Analysis of similarity (ANOSIM) revealed a significant difference of microalgae epiphytes assemblages between sites and seagrasses. Epiphytes assemblages in conservation area were more abundant than non-conservation area, both in Bali and Lombok. On seagrass comparison, Enhalus acoroides showed higher abundance of epiphytes assemblages than those on Cymodocea rotundata. Based on principal component analysis (PCA), this study highlights the microalgae epiphytic communities strongly influenced by seawater temperature, phosphate's concentration, and pH in sediment. This study also demonstrated that the assemblages of microalgae epiphytic communities affected by differences of seagrass morphological and longevity.

Unravelling the Spatial and Temporal Plasticity of Eelgrass Meadows

The phenotypic plasticity of seagrasses enables them to adapt to changes in environmental conditions and withstand or recover from disturbance. This plasticity was demonstrated in the large variation recorded throughout a suite of bioindicators measured within Zostera marina meadows around Wales and SW England, United Kingdom. Short-term spatial data were analysed alongside long-term monitoring data to determine which bioindicators best described the status of eelgrass meadows subjected to a range of environmental and anthropogenic drivers. Shoot density, leaf length, leaf nutrients (C:N ratio, %N, %P) including stable isotope of δ¹³C and δ¹⁵N provided insight into the longer-term status of the meadows studied and a good indication of the causes of long-term decline. Meadows ranged from those in the Isles of Scilly with little evidence of impact to those in Littlewick in Milford Haven, Wales that showed the highest levels of impacts of all sites. Bioindicators at Littlewick showed clear warning signs of nutrient loading reflected in the long-term decline in shoot density, and prevalence of wasting disease. This study highlights the need for continuous consistent monitoring and the benefits of using extra tools in the form of shoot nutrient analysis to determine causes of decline.

The role of seagrass vegetation and local environmental conditions in shaping benthic bacterial and macroinvertebrate communities in a tropical coastal lagoon

We investigated the influence of seagrass canopies on the benthic biodiversity of bacteria and macroinvertebrates in a Red Sea tropical lagoon. Changes in abundance, number of taxa and assemblage structure were analyzed in response to seagrass densities (low, SLD; high, SHD; seagrasses with algae, SA), and compared with unvegetated sediments. Biological and environmental variables were examined in these four habitats (hereafter called treatments), both in the underlaying sediments and overlaying waters, at three randomly picked locations in March 2017. Differences between treatments were more apparent in the benthic habitat than in the overlaying waters. The presence of vegetation (more than its cover) and changes in sedimentary features (grain size and metals) at local scales influenced the observed biological patterns, particularly for macroinvertebrates. Of note, the highest percentage of exclusive macroinvertebrate taxa (18% of the gamma diversity) was observed in the SHD treatment peaking in the SA for bacteria. Benthic macroinvertebrates and bacteria shared a generally low number of taxa across treatments and locations; approximately, 25% of the gamma diversity was shared among all treatments and locations for macrofauna, dropping to 11% for bacteria. Given the low overlap in the species distribution across the lagoon, sustaining the connectivity among heterogeneous soft sediment habitats appears to be essential for maintaining regional biodiversity. This study addresses a current scientific gap related to the relative contributions of vegetated and unvegetated habitats to biodiversity in tropical regions.

Low genotypic diversity and long-term ecological decline in a spatially structured seagrass population

In isolated or declining populations, viability may be compromised further by loss of genetic diversity. Therefore, it is important to understand the relationship between long-term ecological trajectories and population genetic structure. However, opportunities to combine these types of data are rare, especially in natural systems. Using an existing panel of 15 microsatellites, we estimated allelic diversity in seagrass, Zostera marina, at five sites around the Isles of Scilly Special Area of Conservation, UK, in 2010 and compared this to 23 years of annual ecological monitoring (1996–2018). We found low diversity and long-term declines in abundance in this relatively pristine but isolated location. Inclusion of the snapshot of genotypic, but less-so genetic, diversity improved prediction of abundance trajectories; however, this was spatial scale-dependent. Selection of the appropriate level of genetic organization and spatial scale for monitoring is, therefore, important to identify drivers of eco-evolutionary dynamics. This has implications for the use of population genetic information in conservation, management, and spatial planning.

Development of an epiphyte indicator of nutrient enrichment: threshold values for seagrass epiphyte load

Metrics of epiphyte load on macrophytes were evaluated for use as quantitative biological indicators for nutrient impacts in estuarine waters, based on review and analysis of the literature on epiphytes and macrophytes, primarily seagrasses, but including some brackish and freshwater rooted macrophyte species. An approach is presented that empirically derives threshold epiphyte loads which are likely to cause specified levels of decrease in macrophyte response metrics such as biomass, shoot density, percent cover, production and growth. Data from 36 studies of 10 macrophyte species were pooled to derive relationships between epiphyte load and -25 and -50% seagrass response levels, which are proposed as the primary basis for establishment of critical threshold values. Given multiple sources of variability in the response data, threshold ranges based on the range of values falling between the median and the 75^th quantiles of observations at a given seagrass response level are proposed rather than single, critical point values. Four epiphyte load threshold categories - low, moderate, high, very high, are proposed. Comparison of values of epiphyte loads associated with 25 and 50% reductions in light to macrophytes suggest that the threshold ranges are realistic both in terms of the principle mechanism of impact to macrophytes and in terms of the magnitude of resultant impacts expressed by the macrophytes. Some variability in response levels was observed among climate regions, and additional data collected with a standardized approach could help in the development of regionalized threshold ranges for the epiphyte load indicator.

Fractal measures of spatial pattern as a heuristic for return rate in vegetative systems

Measurement of population persistence is a long-standing problem in ecology; in particular, whether it is possible to gain insights into persistence without long time-series. Fractal measurements of spatial patterns, such as the Korcak exponent or boundary dimension, have been proposed as indicators of the persistence of underlying dynamics. Here we explore under what conditions a predictive relationship between fractal measures and persistence exists. We combine theoretical arguments with an aerial snapshot and time series from a long-term study of seagrass. For this form of vegetative growth, we find that the expected relationship between the Korcak exponent and persistence is evident at survey sites where the population return rate can be measured. This highlights a limitation of the use of power-law patch-size distributions and other indicators based on spatial snapshots. Moreover, our numeric simulations show that for a single species and a range of environmental conditions that the Korcak-persistence relationship provides a link between temporal dynamics and spatial pattern; however, this relationship is specific to demographic factors, so we cannot use this methodology to compare between species.

Microspatial variability in community structure and photophysiology of calcified macroalgal microbiomes revealed by coupling of hyperspectral and high-resolution fluorescence imaging

Calcifying coralline macroalgae provide biogenic habitats colonised by epiphytic microalgae that contribute significantly to community productivity. Georeferenced hyperspectral and high-resolution fluorescence imaging were coupled to microspatially mapped community composition and relative biomass of macroalgal host and epiphyte microalgal groups, and their weighted contributions to productivity within host fronds of Corallina officinalis on upper and lower zones of a rocky shore were determined. Lower shore epiphytes were dominated by filamentous diatoms (Bacillariophyta), confined to the apex of the frond structure, which were low light acclimated but retained a high capacity for photoprotective down regulation and contributed up to 51% of total community productivity. Upper shore epiphytes were dominated by green algae (Chlorophyta) and single-celled diatoms (principally Cocconeis spp.), which were high light acclimated but present at far lower relative biomass and contributed negligibly to productivity. The host, C. officinalis was the main primary producer. Variation in light environment resulting from differences in shore height and shading within the host macroalga, likely play a large role in determining patterns in epiphyte community structure, biomass and productivity observed. Additionally, microspatial gradients in photophysiological parameters along the host macroalga likely resulted from age-dependent variation in pigments as well as the gradient in light environment.

The roles of flowering, overwinter survival and sea surface temperature in the long-term population dynamics of Zostera marina around the Isles of Scilly, UK

Interaction between biotic and abiotic drivers of dynamics is an important topic in ecology. Despite numerous short-term studies, there is a paucity of evidence about how environmental structure modifies dynamics in marine systems. We quantified Zostera marina flowering and non-flowering shoot density annually from 1996 to 2012 around the Isles of Scilly, UK, parameterizing a population dynamic model. Flowering is structured in time and space, with temperature and flowering positively associated at some locations only. We found no evidence that flower production contributes to seagrass density but 'patchiness' was positively associated with flowering in the previous year. With evidence of substantial overwinter survival, findings support the hypothesis that local populations are maintained largely through vegetative reproduction but sexual reproduction may contribute to colonisation of vacant habitat. This long-term study (1) tests validity of shorter-term investigations, (2) quantifies interaction between biotic and abiotic factors and (3) promotes seagrass as a model ecosystem.