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Rosing-Asvid A, Löytynoja A, Momigliano P, Hansen RG, Scharff-Olsen CH, Valtonen M, Kammonen J, Dietz R, Rigét FF, Ferguson SH, Lydersen C, Kovacs KM, Holland DM, Jernvall J, Auvinen P, Tange Olsen M. An evolutionarily distinct ringed seal in the Ilulissat Icefjord. Mol Ecol 2023; 32:5932-5943. [PMID: 37855154 DOI: 10.1111/mec.17163] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Revised: 09/20/2023] [Accepted: 10/02/2023] [Indexed: 10/20/2023]
Abstract
The Earth's polar regions are low rates of inter- and intraspecific diversification. An extreme mammalian example is the Arctic ringed seal (Pusa hispida hispida), which is assumed to be panmictic across its circumpolar Arctic range. Yet, local Inuit communities in Greenland and Canada recognize several regional variants; a finding supported by scientific studies of body size variation. It is however unclear whether this phenotypic variation reflects plasticity, morphs or distinct ecotypes. Here, we combine genomic, biologging and survey data, to document the existence of a unique ringed seal ecotype in the Ilulissat Icefjord (locally 'Kangia'), Greenland; a UNESCO World Heritage site, which is home to the most productive marine-terminating glacier in the Arctic. Genomic analyses reveal a divergence of Kangia ringed seals from other Arctic ringed seals about 240 kya, followed by secondary contact since the Last Glacial Maximum. Despite ongoing gene flow, multiple genomic regions appear under strong selection in Kangia ringed seals, including candidate genes associated with pelage coloration, growth and osmoregulation, potentially explaining the Kangia seal's phenotypic and behavioural uniqueness. The description of 'hidden' diversity and adaptations in yet another Arctic species merits a reassessment of the evolutionary processes that have shaped Arctic diversity and the traditional view of this region as an evolutionary freezer. Our study highlights the value of indigenous knowledge in guiding science and calls for efforts to identify distinct populations or ecotypes to understand how these might respond differently to environmental change.
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Affiliation(s)
| | - Ari Löytynoja
- Institute of Biotechnology, University of Helsinki, Helsinki, Finland
| | - Paolo Momigliano
- Department of Biochemistry, Genetics, and Immunology, Universidade de Vigo, Vigo, Spain
- Area of Ecology and Biodiversity, School of Biological Sciences, The University of Hong Kong, Pok Fu Lam, Hong Kong
| | | | | | - Mia Valtonen
- Wildlife Ecology Group, Natural Resources Institute Finland, Helsinki, Finland
| | - Juhana Kammonen
- Institute of Biotechnology, University of Helsinki, Helsinki, Finland
| | - Rune Dietz
- Department of Ecoscience, Aarhus University, Roskilde, Denmark
| | | | | | | | - Kit M Kovacs
- Norwegian Polar Institute, Fram Centre, Tromsø, Norway
| | - David M Holland
- Mathematics and Atmosphere/Ocean Science, Courant Institute of Mathematical Sciences, New York University, New York City, New York, USA
| | - Jukka Jernvall
- Institute of Biotechnology, University of Helsinki, Helsinki, Finland
| | - Petri Auvinen
- Institute of Biotechnology, University of Helsinki, Helsinki, Finland
| | - Morten Tange Olsen
- Section for Molecular Ecology and Evolution, Globe Institute, University of Copenhagen, Copenhagen, Denmark
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2
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Meschersky SI, Meschersky IG, Solovyeva MA, Rozhnov VV. Genetic Characteristics of the Baikal Seal Pusa sibirica Population. DOKLADY BIOLOGICAL SCIENCES : PROCEEDINGS OF THE ACADEMY OF SCIENCES OF THE USSR, BIOLOGICAL SCIENCES SECTIONS 2023; 511:247-250. [PMID: 37833580 DOI: 10.1134/s0012496623700400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Revised: 03/03/2023] [Accepted: 03/05/2023] [Indexed: 10/15/2023]
Abstract
Nucleotide sequence diversity in two mtDNA loci (the cytochrome b gene and the control region) was for the first time studied in the Baikal seal Pusa sibirica with the use of several spatiotemporal samples. The population was found to be evolutionarily young and to be in the stage of demographic expansion.
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Affiliation(s)
- S I Meschersky
- Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Moscow, Russia.
| | - I G Meschersky
- Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Moscow, Russia
| | - M A Solovyeva
- Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Moscow, Russia
| | - V V Rozhnov
- Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Moscow, Russia
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3
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Heino MT, Nyman T, Palo JU, Harmoinen J, Valtonen M, Pilot M, Översti S, Salmela E, Kunnasranta M, Väinölä R, Hoelzel AR, Aspi J. Museum specimens of a landlocked pinniped reveal recent loss of genetic diversity and unexpected population connections. Ecol Evol 2023; 13:e9720. [PMID: 36699566 PMCID: PMC9849707 DOI: 10.1002/ece3.9720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2022] [Revised: 12/14/2022] [Accepted: 12/19/2022] [Indexed: 01/20/2023] Open
Abstract
The Saimaa ringed seal (Pusa hispida saimensis) is endemic to Lake Saimaa in Finland. The subspecies is thought to have originated when parts of the ringed seal population of the Baltic region were trapped in lakes emerging due to postglacial bedrock rebound around 9000 years ago. During the 20th century, the population experienced a drastic human-induced bottleneck. Today encompassing a little over 400 seals with extremely low genetic diversity, it is classified as endangered. We sequenced sections of the mitochondrial control region from 60 up to 125-years-old museum specimens of the Saimaa ringed seal. The generated dataset was combined with publicly available sequences. We studied how genetic variation has changed through time in this subspecies and how it is phylogenetically related to other ringed seal populations from the Baltic Sea, Lake Ladoga, North America, Svalbard, and the White Sea. We observed temporal fluctuations in haplotype frequencies and loss of haplotypes accompanied by a recent reduction in female effective population size. In apparent contrast with the traditionally held view of the Baltic origin of the population, the Saimaa ringed seal mtDNA variation also shows affinities to North American ringed seals. Our results suggest that the Saimaa ringed seal has experienced recent genetic drift associated with small population size. The results further suggest that extant Baltic ringed seal is not representative of the ancestral population of the Saimaa ringed seal, which calls for re-evaluation of the deep history of this subspecies.
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Affiliation(s)
- Matti T. Heino
- Ecology and Genetics Research UnitUniversity of OuluOuluFinland,Department of Forensic MedicineUniversity of HelsinkiHelsinkiFinland
| | - Tommi Nyman
- Department of Ecosystems in the Barents Region, Svanhovd Research StationNorwegian Institute of Bioeconomy ResearchSvanvikNorway
| | - Jukka U. Palo
- Department of Forensic MedicineUniversity of HelsinkiHelsinkiFinland,Forensic Chemistry Unit/Forensic GeneticsFinnish Institute for Health and WelfareHelsinkiFinland
| | - Jenni Harmoinen
- Ecology and Genetics Research UnitUniversity of OuluOuluFinland,Wildlife Ecology GroupNatural Resources Institute FinlandHelsinkiFinland
| | - Mia Valtonen
- Wildlife Ecology GroupNatural Resources Institute FinlandHelsinkiFinland,Department of Environmental and Biological SciencesUniversity of Eastern FinlandJoensuuFinland,Institute of BiotechnologyUniversity of HelsinkiHelsinkiFinland
| | - Małgorzata Pilot
- School of Biological and Biomedical SciencesDurham UniversityDurhamUK,Museum and Institute of ZoologyPolish Academy of SciencesGdańskPoland,Faculty of BiologyUniversity of GdańskGdańskPoland
| | - Sanni Översti
- Transmission, Infection, Diversification and Evolution GroupMax‐Planck Institute for the Science of Human HistoryJenaGermany,Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental SciencesUniversity of HelsinkiHelsinkiFinland
| | - Elina Salmela
- Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental SciencesUniversity of HelsinkiHelsinkiFinland,Department of Biology, Faculty of ScienceUniversity of TurkuTurkuFinland
| | - Mervi Kunnasranta
- University of Eastern FinlandJoensuuFinland,Natural Resources Institute FinlandJoensuuFinland
| | - Risto Väinölä
- Finnish Museum of Natural HistoryUniversity of HelsinkiHelsinkiFinland
| | | | - Jouni Aspi
- Ecology and Genetics Research UnitUniversity of OuluOuluFinland
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4
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Sundell T, Kammonen JI, Mustanoja E, Biard V, Kunnasranta M, Niemi M, Nykänen M, Nyman T, Palo JU, Valtonen M, Paulin L, Jernvall J, Auvinen P. Genomic evidence uncovers inbreeding and supports translocations in rescuing the genetic diversity of a landlocked seal population. CONSERV GENET 2023. [DOI: 10.1007/s10592-022-01497-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
AbstractFragmentation of isolated populations increases the risk of inbreeding and loss of genetic diversity. The endemic Saimaa ringed seal (Pusa hispida saimensis) is one of the most endangered pinnipeds in the world with a population of only ~ 400 individuals. The current genetic diversity of this subspecies, isolated in Lake Saimaa in Finland for ca. 1000 generations, is alarmingly low. We performed whole-genome sequencing on Saimaa ringed seals (N = 30) and analyzed the level of homozygosity and genetic composition across the individual genomes. Our results show that the Saimaa ringed seal population has a high number of runs of homozygosity (RoH) compared with the neighboring Baltic ringed seal (Pusa hispida botnica) reference population (p < 0.001). There is also a tendency for stillborn seal pups to have more pronounced RoH. Since the population is divided into semi-isolated subpopulations within the Lake Saimaa exposing the population to deleterious genomic effects, our results support augmented gene flow as a genetic conservation action. Based on our results suggesting inbreeding depression in the population, we recommend Pihlajavesi as a potential source and Southern Saimaa as a potential recipient subpopulation for translocating individuals. The Saimaa ringed seal is a recognized subspecies and therefore translocations should be considered only within the lake to avoid an unpredictable risk of disease, the introduction of deleterious alleles, and severe ecological issues for the population.
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5
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Virrueta Herrera S, Johnson KP, Sweet AD, Ylinen E, Kunnasranta M, Nyman T. High levels of inbreeding with spatial and host-associated structure in lice of an endangered freshwater seal. Mol Ecol 2022; 31:4593-4606. [PMID: 35726520 PMCID: PMC9544963 DOI: 10.1111/mec.16569] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2022] [Revised: 05/12/2022] [Accepted: 05/20/2022] [Indexed: 02/02/2023]
Abstract
Host-specialist parasites of endangered large vertebrates are in many cases more endangered than their hosts. In particular, low host population densities and reduced among-host transmission rates are expected to lead to inbreeding within parasite infrapopulations living on single host individuals. Furthermore, spatial population structures of directly-transmitted parasites should be concordant with those of their hosts. Using population genomic approaches, we investigated inbreeding and population structure in a host-specialist seal louse (Echinophthirius horridus) infesting the Saimaa ringed seal (Phoca hispida saimensis), which is endemic to Lake Saimaa in Finland, and is one of the most endangered pinnipeds in the world. We conducted genome resequencing of pairs of lice collected from 18 individual Saimaa ringed seals throughout the Lake Saimaa complex. Our analyses showed high genetic similarity and inbreeding between lice inhabiting the same individual seal host, indicating low among-host transmission rates. Across the lake, genetic differentiation among individual lice was correlated with their geographic distance, and assignment analyses revealed a marked break in the genetic variation of the lice in the middle of the lake, indicating substantial population structure. These findings indicate that movements of Saimaa ringed seals across the main breeding areas of the fragmented Lake Saimaa complex may in fact be more restricted than suggested by previous population-genetic analyses of the seals themselves.
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Affiliation(s)
- Stephany Virrueta Herrera
- Illinois Natural History Survey, Prairie Research Institute, University of Illinois, Champaign, Illinois, USA.,Program in Ecology, Evolution, and Conservation, University of Illinois, Urbana, Illinois, USA
| | - Kevin P Johnson
- Illinois Natural History Survey, Prairie Research Institute, University of Illinois, Champaign, Illinois, USA
| | - Andrew D Sweet
- Department of Biological Sciences, Arkansas State University, Jonesboro, Arkansas, USA
| | - Eeva Ylinen
- Department of Environmental and Biological Sciences, University of Eastern Finland, Joensuu, Finland
| | - Mervi Kunnasranta
- Department of Environmental and Biological Sciences, University of Eastern Finland, Joensuu, Finland.,Natural Resources Institute Finland, Joensuu, Finland
| | - Tommi Nyman
- Department of Ecosystems in the Barents Region, Svanhovd Research Station, Norwegian Institute of Bioeconomy Research, Svanvik, Norway
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6
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Lindsay JM, Laidre KL, Conn PB, Moreland EE, Boveng PL. Modeling ringed seal Pusa hispida habitat and lair emergence timing in the eastern Bering and Chukchi Seas. ENDANGER SPECIES RES 2021. [DOI: 10.3354/esr01140] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
Ringed seals Pusa hispida are reliant on snow and sea ice for denning, and a better understanding of ringed seal habitat selection and timing of emergence from snow dens (also called lairs) is needed to quantify and predict effects of climate change in the Arctic. We used generalized additive models to assess relationships between ringed seal counts, from spring aerial surveys in the Bering Sea (2012 and 2013) and Chukchi Sea (2016), and spatiotemporal covariates including survey date, remotely sensed snow and sea-ice values, and short-term weather data. We produced separate models for total ringed seal counts and for pup counts within each region. Our models showed that in both areas, total ringed seal counts increased over the course of the spring, especially after 15 May, indicating emergence from lairs and/or the onset of basking behavior. For the more northerly Chukchi Sea, we found a substantial unimodal effect of snow melt progression and a positive effect of snow depth on total ringed seal counts. In contrast, Bering Sea total ringed seal counts and pup counts in both regions were affected much more strongly by date than by habitat variables. Overall, our findings demonstrate that snow depth and melt play an important role in the timing of ringed seal den emergence, particularly in the Chukchi Sea, and suggest that ringed seal denning may be affected by continued shifts in melt and snow depth associated with climate change.
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Affiliation(s)
- JM Lindsay
- School of Aquatic and Fishery Sciences, University of Washington, Seattle, WA 98105, USA
| | - KL Laidre
- School of Aquatic and Fishery Sciences, University of Washington, Seattle, WA 98105, USA
- Polar Science Center, Applied Physics Laboratory, University of Washington, Seattle, WA 98105, USA
| | - PB Conn
- Marine Mammal Laboratory, Alaska Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA 98115, USA
| | - EE Moreland
- Marine Mammal Laboratory, Alaska Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA 98115, USA
| | - PL Boveng
- Marine Mammal Laboratory, Alaska Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA 98115, USA
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7
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Gousy-Leblanc M, Yannic G, Therrien JF, Lecomte N. Mapping our knowledge on birds of prey population genetics. CONSERV GENET 2021. [DOI: 10.1007/s10592-021-01368-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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8
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Lang AR, Boveng P, Quakenbush L, Robertson K, Lauf M, Rode KD, Ziel H, Taylor BL. Re-examination of population structure in Arctic ringed seals using DArTseq genotyping. ENDANGER SPECIES RES 2021. [DOI: 10.3354/esr01087] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
Although Arctic ringed seals Phoca hispida hispida are currently abundant and broadly distributed, their numbers are projected to decline substantially by the year 2100 due to climate warming. While understanding population structure could provide insight into the impact of environmental changes on this subspecies, detecting demographically important levels of exchange can be difficult in taxa with high abundance. We used a next-generation sequencing approach (DArTseq) to genotype ~5700 single nucleotide polymorphisms in 79 seals from 4 Pacific Arctic regions. Comparison of the 2 most geographically separated strata (eastern Bering vs. northeastern Chukchi-Beaufort Seas) revealed a statistically significant level of genetic differentiation (FST = 0.001, p = 0.005) that, while small, was 1 to 2 orders of magnitude greater than expected based on divergence estimated for similarly sized populations connected by low (1% yr-1) dispersal. A relatively high proportion (72 to 88%) of individuals within these strata could be genetically assigned to their stratum of origin. These results indicate that demographically important structure may be present among Arctic ringed seals breeding in different areas, increasing the risk that declines in the number of seals breeding in areas most negatively affected by environmental warming could occur.
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Affiliation(s)
- AR Lang
- Ocean Associates, Inc., Arlington, VA 22207, USA, under contract to the Southwest Fisheries Science Center, NOAA Fisheries, La Jolla, CA 92037, USA
| | - P Boveng
- Marine Mammal Laboratory, Alaska Fisheries Science Center, NOAA Fisheries, Seattle, WA 98115, USA
| | - L Quakenbush
- Arctic Marine Mammal Program, Alaska Department of Fish and Game, Fairbanks, AK 99701, USA
| | - K Robertson
- Marine Mammal and Turtle Division, Southwest Fisheries Science Center, NOAA Fisheries, La Jolla, CA 92037, USA
| | - M Lauf
- Ocean Associates, Inc., Arlington, VA 22207, USA, under contract to the Southwest Fisheries Science Center, NOAA Fisheries, La Jolla, CA 92037, USA
| | - KD Rode
- Alaska Science Center, US Geological Survey, Anchorage, AK 99508, USA
| | - H Ziel
- Marine Mammal Laboratory, Alaska Fisheries Science Center, NOAA Fisheries, Seattle, WA 98115, USA
| | - BL Taylor
- Marine Mammal and Turtle Division, Southwest Fisheries Science Center, NOAA Fisheries, La Jolla, CA 92037, USA
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Villegas‐Ríos D, Freitas C, Moland E, Thorbjørnsen SH, Olsen EM. Inferring individual fate from aquatic acoustic telemetry data. Methods Ecol Evol 2020. [DOI: 10.1111/2041-210x.13446] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- David Villegas‐Ríos
- Department of Ecology and Marine Resources Instituto Mediterráneo de Estudios Avanzados (CSIC‐UiB) Esporles Spain
- Department of Ecology and Marine Resources Instituto de Investigaciones Marinas (CSIC) Vigo Spain
| | - Carla Freitas
- Institute of Marine Research His Norway
- Marine and Environmental Sciences Center MARE Funchal Portugal
| | - Even Moland
- Institute of Marine Research His Norway
- Department of Natural Sciences Centre for Coastal Research (CCR) University of Agder Kristiansand Norway
| | - Susanna Huneide Thorbjørnsen
- Institute of Marine Research His Norway
- Department of Natural Sciences Centre for Coastal Research (CCR) University of Agder Kristiansand Norway
| | - Esben M. Olsen
- Institute of Marine Research His Norway
- Department of Natural Sciences Centre for Coastal Research (CCR) University of Agder Kristiansand Norway
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10
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Laakkonen J, Jernvall J. Muscles of Mastication and the Temporo-Mandibular Joint of the Saimaa (Pusa hispida saimensis) and Baltic (Pusa hispida botnica) Ringed Seals. ANN ZOOL FENN 2020. [DOI: 10.5735/086.057.0103] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
- Juha Laakkonen
- Division of Veterinary Anatomy and Developmental Biology, Department of Veterinary Biosciences, Faculty of Veterinary Medicine, P.O. Box 66, FI-00014 University of Helsinki, Finland
| | - Jukka Jernvall
- Institute of Biotechnology, P.O. Box 56, FI-00014 University of Helsinki, Finland
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11
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Ferguson SH, Yurkowski DJ, Young BG, Willing C, Zhu X, Muir DCG, Fisk AT, Thiemann GW. Do intraspecific life history patterns follow interspecific predictions? A test using latitudinal variation in ringed seals. POPUL ECOL 2019. [DOI: 10.1002/1438-390x.12008] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Steven H. Ferguson
- Department of Fisheries and Oceans Canada Winnipeg Manitoba Canada
- Department of Biological Sciences University of Manitoba Winnipeg Manitoba Canada
| | - David J. Yurkowski
- Department of Fisheries and Oceans Canada Winnipeg Manitoba Canada
- Department of Biological Sciences University of Manitoba Winnipeg Manitoba Canada
| | - Brent G. Young
- Department of Fisheries and Oceans Canada Winnipeg Manitoba Canada
| | - Cornelia Willing
- Department of Biological Sciences University of Manitoba Winnipeg Manitoba Canada
- Centre for Earth Observation Science University of Manitoba Winnipeg Manitoba Canada
| | - Xinhua Zhu
- Department of Fisheries and Oceans Canada Winnipeg Manitoba Canada
- Great Lakes Institute for Environmental Research University of Windsor Windsor Ontario Canada
| | - Derek C. G. Muir
- Environment and Climate Change Canada Aquatic Contaminants Research Division Burlington Ontario Canada
| | - Aaron T. Fisk
- Great Lakes Institute for Environmental Research University of Windsor Windsor Ontario Canada
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12
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Ferguson SH, Zhu X, Young BG, Yurkowski DJ, Thiemann GW, Fisk AT, Muir DC. Geographic variation in ringed seal (Pusa hispida) growth rate and body size. CAN J ZOOL 2018. [DOI: 10.1139/cjz-2017-0213] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
We summarize geographical patterns in ringed seal (Pusa hispida (Schreber, 1775)) body length and girth growth using 3012 samples collected by Inuit hunters in the eastern Canadian Arctic from 1990 to 2016. Spatial structure was detected using cluster analysis of environmental variables separating a northern region in the eastern Canadian High Arctic and a southern region in Hudson Bay. The north was characterized by more fast ice, multiyear ice, greater snow depth, colder temperatures, and greater sea-ice concentration in the spring seal breeding season. Hierarchical Bayesian models described length and axillary girth growth of northern seals as slower than in the south, reaching asymptotic size 5–7 years later. Northern females were larger than males (asymptotic length of 149 versus 140 cm, respectively) and both were larger than southern seals (males and females 126 cm). We conclude that environmental variation was best represented by regions rather than latitude, regional body size differences were driven by differential growth rates, and northern ringed seals may be characterized by reverse sexual size dimorphism.
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Affiliation(s)
- Steven H. Ferguson
- Fisheries and Oceans Canada, 501 University Crescent, Winnipeg, MB R3T 2N6, Canada
- Department of Biological Sciences, University of Manitoba, Winnipeg, MB R3T 2N2, Canada
| | - Xinhua Zhu
- Fisheries and Oceans Canada, 501 University Crescent, Winnipeg, MB R3T 2N6, Canada
| | - Brent G. Young
- Fisheries and Oceans Canada, 501 University Crescent, Winnipeg, MB R3T 2N6, Canada
| | - David J. Yurkowski
- Fisheries and Oceans Canada, 501 University Crescent, Winnipeg, MB R3T 2N6, Canada
- Department of Biological Sciences, University of Manitoba, Winnipeg, MB R3T 2N2, Canada
| | - Gregory W. Thiemann
- Faculty of Environmental Studies, York University, Toronto, ON M3J 1P3, Canada
| | - Aaron T. Fisk
- Great Lakes Institute for Environmental Research, University of Windsor, 401 Sunset Avenue, Windsor, ON N9B 3P4, Canada
| | - Derek C.G. Muir
- Environment Climate Change Canada, Aquatic Contaminants Research Division, Burlington, ON L7S 1A1, Canada
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13
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Hamilton CD, Kovacs KM, Ims RA, Lydersen C. Haul-out behaviour of Arctic ringed seals (Pusa hispida): inter-annual patterns and impacts of current environmental change. Polar Biol 2018. [DOI: 10.1007/s00300-018-2260-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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14
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Oksanen SM, Niemi M, Ahola MP, Kunnasranta M. Identifying foraging habitats of Baltic ringed seals using movement data. MOVEMENT ECOLOGY 2015; 3:33. [PMID: 26401285 PMCID: PMC4580415 DOI: 10.1186/s40462-015-0058-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/29/2015] [Accepted: 09/06/2015] [Indexed: 06/05/2023]
Abstract
BACKGROUND Identification of key foraging habitats of aquatic top predators is essential for designing effective management and conservation strategies. The Baltic ringed seal (Phoca hispida botnica) interacts with anthropogenic activities and knowledge of its spatial ecology is needed for planning population management and mitigating interactions with coastal fisheries. We investigated habitat use and foraging habitats of ringed seals (n = 26) with satellite telemetry in the northern Baltic Sea during autumn, which is important time for foraging for ringed seals. We used first passage time (FPT) approach to identify the areas of high residency corresponding to foraging areas. RESULTS Tracked seals showed considerable movement; mean (±SD) home ranges (95 % adaptive local nearest-neighbour convex hull, a-LoCoH) were 8030 ± 4796 km(2). Two seals moved randomly and foraging areas could not be identified for them. The majority (24/26) of the studied seals occupied 1-6 main foraging areas, where they spent 47 ± 22 % of their total time. Typically the foraging areas of individuals had a mean distance of 254 ± 194 km. Most of the seals (n = 17) were "long-range foragers" which occupied several spatially remote foraging areas (mean distance 328 ± 180 km) or, in the case of two individuals, did not concentrate foraging to any particular area. The other seals (n = 9) were "local foragers" having only one foraging area or the mean distance between several areas was shorter (67 ± 26 km). Foraging areas of all seals were characterised by shallow bathymetry (median ± SD: 13 ± 49 m) and proximity to the mainland (10 ± 14 km), partly overlapping with protected areas and coastal fisheries. CONCLUSIONS Our results indicate that in general the ringed seals range over large areas and concentrate feeding to different-often remote-areas during the open water season. Therefore, removal of individuals near the fishing gear may not be a locally effective method to mitigate seal depredation. Overlap of foraging areas with protected areas indicate that management of key foraging and resting habitats could to some extent be implemented within the existing network of marine protected areas.
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Affiliation(s)
- Sari M. Oksanen
- />Department of Biology, University of Eastern Finland, PO Box 111, FI-80101 Joensuu, Finland
| | - Marja Niemi
- />Department of Biology, University of Eastern Finland, PO Box 111, FI-80101 Joensuu, Finland
| | - Markus P. Ahola
- />The Natural Resources Institute Finland, Itäinen Pitkäkatu 3, FI-20520 Turku, Finland
| | - Mervi Kunnasranta
- />Department of Biology, University of Eastern Finland, PO Box 111, FI-80101 Joensuu, Finland
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15
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Valtonen M, Heino M, Aspi J, Buuri H, Kokkonen T, Kunnasranta M, Palo JU, Nyman T. Genetic Monitoring of a Critically-Endangered Seal Population Based on Field-Collected Placentas. ANN ZOOL FENN 2015. [DOI: 10.5735/086.052.0205] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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16
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Pilfold NW, Derocher AE, Stirling I, Richardson E. Multi-temporal factors influence predation for polar bears in a changing climate. OIKOS 2015. [DOI: 10.1111/oik.02000] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | - Andrew E. Derocher
- Dept of Biological Sciences; Univ. of Alberta; Edmonton, AB T6G 2E9 Canada
| | - Ian Stirling
- Dept of Biological Sciences; Univ. of Alberta; Edmonton, AB T6G 2E9 Canada
- Wildlife Research Division; Science and Technology Branch, Environment Canada; Edmonton, AB T6G 2E9 Canada
| | - Evan Richardson
- Wildlife Research Division; Science and Technology Branch, Environment Canada; Edmonton, AB T6G 2E9 Canada
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17
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Nyman T, Valtonen M, Aspi J, Ruokonen M, Kunnasranta M, Palo JU. Demographic histories and genetic diversities of Fennoscandian marine and landlocked ringed seal subspecies. Ecol Evol 2014; 4:3420-34. [PMID: 25535558 PMCID: PMC4228616 DOI: 10.1002/ece3.1193] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2014] [Revised: 07/21/2014] [Accepted: 07/22/2014] [Indexed: 11/18/2022] Open
Abstract
Island populations are on average smaller, genetically less diverse, and at a higher risk to go extinct than mainland populations. Low genetic diversity may elevate extinction probability, but the genetic component of the risk can be affected by the mode of diversity loss, which, in turn, is connected to the demographic history of the population. Here, we examined the history of genetic erosion in three Fennoscandian ringed seal subspecies, of which one inhabits the Baltic Sea 'mainland' and two the 'aquatic islands' composed of Lake Saimaa in Finland and Lake Ladoga in Russia. Both lakes were colonized by marine seals after their formation c. 9500 years ago, but Lake Ladoga is larger and more contiguous than Lake Saimaa. All three populations suffered dramatic declines during the 20th century, but the bottleneck was particularly severe in Lake Saimaa. Data from 17 microsatellite loci and mitochondrial control-region sequences show that Saimaa ringed seals have lost most of the genetic diversity present in their Baltic ancestors, while the Ladoga population has experienced only minor reductions. Using Approximate Bayesian computing analyses, we show that the genetic uniformity of the Saimaa subspecies derives from an extended founder event and subsequent slow erosion, rather than from the recent bottleneck. This suggests that the population has persisted for nearly 10,000 years despite having low genetic variation. The relatively high diversity of the Ladoga population appears to result from a high number of initial colonizers and a high post-colonization population size, but possibly also by a shorter isolation period and/or occasional gene flow from the Baltic Sea.
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Affiliation(s)
- Tommi Nyman
- Department of Biology, University of Eastern FinlandPO Box 111, Joensuu, FI-80101, Finland
- Institute for Systematic Botany, University of Zurich, Zollikerstrasse 107Zurich, CH-8008, Switzerland
| | - Mia Valtonen
- Department of Biology, University of Eastern FinlandPO Box 111, Joensuu, FI-80101, Finland
| | - Jouni Aspi
- Department of Biology, University of OuluPO Box 3000, Oulu, FI-90014, Finland
| | - Minna Ruokonen
- Department of Biology, University of OuluPO Box 3000, Oulu, FI-90014, Finland
| | - Mervi Kunnasranta
- Department of Biology, University of Eastern FinlandPO Box 111, Joensuu, FI-80101, Finland
| | - Jukka U Palo
- Laboratory of Forensic Biology, Hjelt Institute, University of HelsinkiPO Box 40, Helsinki, FI-00014, Finland
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18
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Klimova A, Phillips CD, Fietz K, Olsen MT, Harwood J, Amos W, Hoffman JI. Global population structure and demographic history of the grey seal. Mol Ecol 2014; 23:3999-4017. [PMID: 25041117 DOI: 10.1111/mec.12850] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2014] [Revised: 06/04/2014] [Accepted: 06/25/2014] [Indexed: 02/06/2023]
Abstract
Although the grey seal Halichoerus grypus is one of the most familiar and intensively studied of all pinniped species, its global population structure remains to be elucidated. Little is also known about how the species as a whole may have historically responded to climate-driven changes in habitat availability and anthropogenic exploitation. We therefore analysed samples from over 1500 individuals collected from 22 colonies spanning the Western and Eastern Atlantic and the Baltic Sea regions, represented by 350 bp of the mitochondrial hypervariable region and up to nine microsatellites. Strong population structure was observed at both types of marker, and highly asymmetrical patterns of gene flow were also inferred, with the Orkney Islands being identified as a source of emigrants to other areas in the Eastern Atlantic. The Baltic and Eastern Atlantic regions were estimated to have diverged a little over 10 000 years ago, consistent with the last proposed isolation of the Baltic Sea. Approximate Bayesian computation also identified genetic signals consistent with postglacial population expansion across much of the species range, suggesting that grey seals are highly responsive to changes in habitat availability.
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Affiliation(s)
- A Klimova
- Department of Animal Behaviour, University of Bielefeld, Postfach 100131, 33501, Bielefeld, Germany
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19
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Valtonen M, Palo JU, Aspi J, Ruokonen M, Kunnasranta M, Nyman T. Causes and consequences of fine-scale population structure in a critically endangered freshwater seal. BMC Ecol 2014; 14:22. [PMID: 25005257 PMCID: PMC4106222 DOI: 10.1186/1472-6785-14-22] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2014] [Accepted: 07/03/2014] [Indexed: 11/10/2022] Open
Abstract
Background Small, genetically uniform populations may face an elevated risk of extinction due to reduced environmental adaptability and individual fitness. Fragmentation can intensify these genetic adversities and, therefore, dispersal and gene flow among subpopulations within an isolated population is often essential for maintaining its viability. Using microsatellite and mtDNA data, we examined genetic diversity, spatial differentiation, interregional gene flow, and effective population sizes in the critically endangered Saimaa ringed seal (Phoca hispida saimensis), which is endemic to the large but highly fragmented Lake Saimaa in southeastern Finland. Results Microsatellite diversity within the subspecies (HE = 0.36) ranks among the lowest thus far recorded within the order Pinnipedia, with signs of ongoing loss of individual heterozygosity, reflecting very low effective subpopulation sizes. Bayesian assignment analyses of the microsatellite data revealed clear genetic differentiation among the main breeding areas, but interregional structuring was substantially weaker in biparentally inherited microsatellites (FST = 0.107) than in maternally inherited mtDNA (FST = 0.444), indicating a sevenfold difference in the gene flow mediated by males versus females. Conclusions Genetic structuring in the population appears to arise from the joint effects of multiple factors, including small effective subpopulation sizes, a fragmented lacustrine habitat, and behavioural dispersal limitation. The fine-scale differentiation found in the landlocked Saimaa ringed seal is especially surprising when contrasted with marine ringed seals, which often exhibit near-panmixia among subpopulations separated by hundreds or even thousands of kilometres. Our results demonstrate that population structures of endangered animals cannot be predicted based on data on even closely related species or subspecies.
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Affiliation(s)
- Mia Valtonen
- Department of Biology, University of Eastern Finland, Joensuu, Finland.
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