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For: Mayr A, Schmid M. Boosting the concordance index for survival data--a unified framework to derive and evaluate biomarker combinations. PLoS One 2014;9:e84483. [PMID: 24400093 DOI: 10.1371/journal.pone.0084483] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2013] [Accepted: 11/14/2013] [Indexed: 11/30/2022]  Open
Number Cited by Other Article(s)
1
Klinkhammer H, Staerk C, Maj C, Krawitz PM, Mayr A. Genetic Prediction Modeling in Large Cohort Studies via Boosting Targeted Loss Functions. Stat Med 2024;43:5412-5430. [PMID: 39440393 PMCID: PMC11586906 DOI: 10.1002/sim.10249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Revised: 09/11/2024] [Accepted: 10/01/2024] [Indexed: 10/25/2024]
2
Wu Z, Mo S, Huang Z, Zheng B. Identification of Diagnostically Relevant Biomarkers in Patients with Coronary Artery Disease by Comprehensive Analysis. J Inflamm Res 2024;17:10495-10513. [PMID: 39654862 PMCID: PMC11627109 DOI: 10.2147/jir.s494438] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2024] [Accepted: 11/28/2024] [Indexed: 12/12/2024]  Open
3
Schmauch B, Elsoukkary SS, Moro A, Raj R, Wehrle CJ, Sasaki K, Calderaro J, Sin-Chan P, Aucejo F, Roberts DE. Combining a deep learning model with clinical data better predicts hepatocellular carcinoma behavior following surgery. J Pathol Inform 2024;15:100360. [PMID: 38292073 PMCID: PMC10825615 DOI: 10.1016/j.jpi.2023.100360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Revised: 12/10/2023] [Accepted: 12/23/2023] [Indexed: 02/01/2024]  Open
4
Niu Y, Wang N, Xu Q. Development of an Endoplasmic Reticulum Stress-Related Diagnostic Signature in Polycystic Ovary Syndrome. Reprod Sci 2024:10.1007/s43032-024-01619-3. [PMID: 38955938 DOI: 10.1007/s43032-024-01619-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Accepted: 06/03/2024] [Indexed: 07/04/2024]
5
Shugao H, Yinhang W, Jing Z, Zhanbo Q, Miao D. Action of m6A-related gene signatures on the prognosis and immune microenvironment of colonic adenocarcinoma. Heliyon 2024;10:e31441. [PMID: 38845921 PMCID: PMC11153101 DOI: 10.1016/j.heliyon.2024.e31441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Revised: 05/12/2024] [Accepted: 05/15/2024] [Indexed: 06/09/2024]  Open
6
Wang CK, Wang TW, Lu CF, Wu YT, Hua MW. Deciphering the Prognostic Efficacy of MRI Radiomics in Nasopharyngeal Carcinoma: A Comprehensive Meta-Analysis. Diagnostics (Basel) 2024;14:924. [PMID: 38732337 PMCID: PMC11082984 DOI: 10.3390/diagnostics14090924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2024] [Revised: 04/12/2024] [Accepted: 04/24/2024] [Indexed: 05/13/2024]  Open
7
Xiao W, Lai Y, Yang H, Que H. Predictive Role of a Novel Ferroptosis-Related lncRNA Pairs Model in the Prognosis of Papillary Thyroid Carcinoma. Biochem Genet 2024;62:775-797. [PMID: 37436560 DOI: 10.1007/s10528-023-10447-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Accepted: 06/29/2023] [Indexed: 07/13/2023]
8
Yue Q, Han W, Ling Lu Z. Nine-Gene Prognostic Signature Related to Gut Microflora for Predicting the Survival in Gastric Cancer Patients. THE TURKISH JOURNAL OF GASTROENTEROLOGY : THE OFFICIAL JOURNAL OF TURKISH SOCIETY OF GASTROENTEROLOGY 2024;35:102-111. [PMID: 38454241 PMCID: PMC10895821 DOI: 10.5152/tjg.2024.23063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Accepted: 04/20/2023] [Indexed: 03/09/2024]
9
Lv L, Huang Y, Li Q, Wu Y, Zheng L. A Comprehensive Prognostic Model for Colon Adenocarcinoma Depending on Nuclear-Mitochondrial-Related Genes. Technol Cancer Res Treat 2024;23:15330338241258570. [PMID: 38832431 PMCID: PMC11149454 DOI: 10.1177/15330338241258570] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2024]  Open
10
Zhao ZY, Cao Y, Wang HL, Liu LY. A risk model based on lncRNA-miRNA-mRNA gene signature for predicting prognosis of patients with bladder cancer. Cancer Biomark 2024;39:277-287. [PMID: 38306023 DOI: 10.3233/cbm-230216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2024]
11
Dong L, Wang H, Miao Z, Yu Y, Gai D, Zhang G, Ge L, Shen X. Endoplasmic reticulum stress-related signature predicts prognosis and immune infiltration analysis in acute myeloid leukemia. Hematology 2023;28:2246268. [PMID: 37589214 DOI: 10.1080/16078454.2023.2246268] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2023] [Accepted: 08/02/2023] [Indexed: 08/18/2023]  Open
12
Liu J, Islam MT, Sang S, Qiu L, Xing L. Biology-aware mutation-based deep learning for outcome prediction of cancer immunotherapy with immune checkpoint inhibitors. NPJ Precis Oncol 2023;7:117. [PMID: 37932419 PMCID: PMC10628135 DOI: 10.1038/s41698-023-00468-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Accepted: 10/13/2023] [Indexed: 11/08/2023]  Open
13
Starke S, Zwanenburg A, Leger K, Lohaus F, Linge A, Kalinauskaite G, Tinhofer I, Guberina N, Guberina M, Balermpas P, von der Grün J, Ganswindt U, Belka C, Peeken JC, Combs SE, Boeke S, Zips D, Richter C, Troost EGC, Krause M, Baumann M, Löck S. Multitask Learning with Convolutional Neural Networks and Vision Transformers Can Improve Outcome Prediction for Head and Neck Cancer Patients. Cancers (Basel) 2023;15:4897. [PMID: 37835591 PMCID: PMC10571894 DOI: 10.3390/cancers15194897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Revised: 09/26/2023] [Accepted: 09/29/2023] [Indexed: 10/15/2023]  Open
14
Meng X, Zou T. Clinical applications of graph neural networks in computational histopathology: A review. Comput Biol Med 2023;164:107201. [PMID: 37517325 DOI: 10.1016/j.compbiomed.2023.107201] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2023] [Revised: 06/10/2023] [Accepted: 06/19/2023] [Indexed: 08/01/2023]
15
Wang TW, Hsu MS, Lin YH, Chiu HY, Chao HS, Liao CY, Lu CF, Wu YT, Huang JW, Chen YM. Application of Radiomics in Prognosing Lung Cancer Treated with Epidermal Growth Factor Receptor Tyrosine Kinase Inhibitors: A Systematic Review and Meta-Analysis. Cancers (Basel) 2023;15:3542. [PMID: 37509204 PMCID: PMC10377421 DOI: 10.3390/cancers15143542] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2023] [Revised: 07/01/2023] [Accepted: 07/06/2023] [Indexed: 07/30/2023]  Open
16
Zhao Y, Gao J, Fan Y, Xu H, Wang Y, Yao P. A risk score model based on endoplasmic reticulum stress related genes for predicting prognostic value of osteosarcoma. BMC Musculoskelet Disord 2023;24:519. [PMID: 37353812 DOI: 10.1186/s12891-023-06629-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Accepted: 06/12/2023] [Indexed: 06/25/2023]  Open
17
Liao CM, Su CT, Huang HC, Lin CM. Improved Survival Analyses Based on Characterized Time-Dependent Covariates to Predict Individual Chronic Kidney Disease Progression. Biomedicines 2023;11:1664. [PMID: 37371759 DOI: 10.3390/biomedicines11061664] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 06/01/2023] [Accepted: 06/05/2023] [Indexed: 06/29/2023]  Open
18
Di D, Zou C, Feng Y, Zhou H, Ji R, Dai Q, Gao Y. Generating Hypergraph-Based High-Order Representations of Whole-Slide Histopathological Images for Survival Prediction. IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE 2023;45:5800-5815. [PMID: 36155478 DOI: 10.1109/tpami.2022.3209652] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
19
Liu Y, Gao Z, Peng C, Jiang X. Construction of a 10-gene prognostic score model of predicting recurrence for laryngeal cancer. Eur J Med Res 2022;27:249. [DOI: 10.1186/s40001-022-00829-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2021] [Accepted: 09/26/2022] [Indexed: 11/15/2022]  Open
20
Sonabend R, Bender A, Vollmer S. Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures. Bioinformatics 2022;38:4178-4184. [PMID: 35818973 PMCID: PMC9438958 DOI: 10.1093/bioinformatics/btac451] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Revised: 06/17/2022] [Accepted: 07/11/2022] [Indexed: 12/24/2022]  Open
21
Liu Y, Li A, Liu J, Meng G, Wang M. TSDLPP: A Novel Two-Stage Deep Learning Framework For Prognosis Prediction Based on Whole Slide Histopathological Images. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2022;19:2523-2532. [PMID: 33989155 DOI: 10.1109/tcbb.2021.3080295] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
22
Meng M, Gu B, Bi L, Song S, Feng DD, Kim J. DeepMTS: Deep Multi-task Learning for Survival Prediction in Patients With Advanced Nasopharyngeal Carcinoma Using Pretreatment PET/CT. IEEE J Biomed Health Inform 2022;26:4497-4507. [PMID: 35696469 DOI: 10.1109/jbhi.2022.3181791] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
23
Gong Y, Wu S, Dong S, Chen S, Cai G, Bao K, Yang H, Jiao Y. Development of a prognostic metabolic signature in stomach adenocarcinoma. Clin Transl Oncol 2022;24:1615-1630. [PMID: 35355155 DOI: 10.1007/s12094-022-02809-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Accepted: 02/19/2022] [Indexed: 02/07/2023]
24
Magnetic Resonance Imaging-Based Radiomics for the Prediction of Progression-Free Survival in Patients with Nasopharyngeal Carcinoma: A Systematic Review and Meta-Analysis. Cancers (Basel) 2022;14:cancers14030653. [PMID: 35158921 PMCID: PMC8833585 DOI: 10.3390/cancers14030653] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Revised: 01/21/2022] [Accepted: 01/26/2022] [Indexed: 02/04/2023]  Open
25
Ran X, Luo J, Zuo C, Huang Y, Sui Y, Cen J, Tang S. Developing metabolic gene signatures to predict intrahepatic cholangiocarcinoma prognosis and mining a miRNA regulatory network. J Clin Lab Anal 2021;36:e24107. [PMID: 34871464 PMCID: PMC8761474 DOI: 10.1002/jcla.24107] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2021] [Revised: 10/14/2021] [Accepted: 10/25/2021] [Indexed: 11/10/2022]  Open
26
Tsai YT, Hsu CM, Chang GH, Tsai MS, Lee YC, Huang EI, Lai CH, Fang KH. Advanced Lung Cancer Inflammation Index Predicts Survival Outcomes of Patients With Oral Cavity Cancer Following Curative Surgery. Front Oncol 2021;11:609314. [PMID: 34660250 PMCID: PMC8514840 DOI: 10.3389/fonc.2021.609314] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Accepted: 09/13/2021] [Indexed: 12/13/2022]  Open
27
Kuruc F, Binder H, Hess M. Stratified neural networks in a time-to-event setting. Brief Bioinform 2021;23:6377517. [PMID: 34585236 DOI: 10.1093/bib/bbab392] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Revised: 08/25/2021] [Accepted: 08/30/2021] [Indexed: 12/28/2022]  Open
28
Yang QF, Wu D, Wang J, Ba L, Tian C, Liu YT, Hu Y, Liu L. Development and validation of an individualized immune prognostic model in stage I-III lung squamous cell carcinoma. Sci Rep 2021;11:12727. [PMID: 34135424 PMCID: PMC8209222 DOI: 10.1038/s41598-021-92115-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Accepted: 06/03/2021] [Indexed: 02/05/2023]  Open
29
Zhang M, Liang M, Chen S, Tan N, Li Y, Xiao Y. Novel physiologic nomogram discriminates symptom outcome in patients with erosive esophagitis. Esophagus 2021;18:407-415. [PMID: 33156447 DOI: 10.1007/s10388-020-00793-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Accepted: 10/23/2020] [Indexed: 02/03/2023]
30
Aastha, Huang P, Liu Y. DeepCompete : A deep learning approach to competing risks in continuous time domain. AMIA ... ANNUAL SYMPOSIUM PROCEEDINGS. AMIA SYMPOSIUM 2021;2020:177-186. [PMID: 33936389 PMCID: PMC8075516] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
31
Jing B, Deng Y, Zhang T, Hou D, Li B, Qiang M, Liu K, Ke L, Li T, Sun Y, Lv X, Li C. Deep learning for risk prediction in patients with nasopharyngeal carcinoma using multi-parametric MRIs. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2020;197:105684. [PMID: 32781421 DOI: 10.1016/j.cmpb.2020.105684] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2019] [Accepted: 07/28/2020] [Indexed: 06/11/2023]
32
Kothari G, Korte J, Lehrer EJ, Zaorsky NG, Lazarakis S, Kron T, Hardcastle N, Siva S. A systematic review and meta-analysis of the prognostic value of radiomics based models in non-small cell lung cancer treated with curative radiotherapy. Radiother Oncol 2020;155:188-203. [PMID: 33096167 DOI: 10.1016/j.radonc.2020.10.023] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Revised: 10/14/2020] [Accepted: 10/15/2020] [Indexed: 12/16/2022]
33
Jin LP, Liu T, Meng FQ, Tai JD. Prognosis prediction model based on competing endogenous RNAs for recurrence of colon adenocarcinoma. BMC Cancer 2020;20:968. [PMID: 33028275 PMCID: PMC7541229 DOI: 10.1186/s12885-020-07163-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2020] [Accepted: 07/10/2020] [Indexed: 01/05/2023]  Open
34
Yao J, Zhu X, Jonnagaddala J, Hawkins N, Huang J. Whole slide images based cancer survival prediction using attention guided deep multiple instance learning networks. Med Image Anal 2020;65:101789. [DOI: 10.1016/j.media.2020.101789] [Citation(s) in RCA: 80] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2019] [Revised: 06/29/2020] [Accepted: 07/16/2020] [Indexed: 01/25/2023]
35
Starke S, Leger S, Zwanenburg A, Leger K, Lohaus F, Linge A, Schreiber A, Kalinauskaite G, Tinhofer I, Guberina N, Guberina M, Balermpas P, von der Grün J, Ganswindt U, Belka C, Peeken JC, Combs SE, Boeke S, Zips D, Richter C, Troost EGC, Krause M, Baumann M, Löck S. 2D and 3D convolutional neural networks for outcome modelling of locally advanced head and neck squamous cell carcinoma. Sci Rep 2020;10:15625. [PMID: 32973220 PMCID: PMC7518264 DOI: 10.1038/s41598-020-70542-9] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2020] [Accepted: 07/20/2020] [Indexed: 12/14/2022]  Open
36
Yan Y, Lin J, Zhang M, Liu H, Zhou Q, Chen R, Wen K, Wang J, Xiao Z, Mao K. A Novel Staging System to Forecast the Cancer-Specific Survival of Patients With Resected Gallbladder Cancer. Front Oncol 2020;10:1281. [PMID: 32850391 PMCID: PMC7399135 DOI: 10.3389/fonc.2020.01281] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2019] [Accepted: 06/19/2020] [Indexed: 12/16/2022]  Open
37
Meier A, Nekolla K, Hewitt LC, Earle S, Yoshikawa T, Oshima T, Miyagi Y, Huss R, Schmidt G, Grabsch HI. Hypothesis-free deep survival learning applied to the tumour microenvironment in gastric cancer. JOURNAL OF PATHOLOGY CLINICAL RESEARCH 2020;6:273-282. [PMID: 32592447 PMCID: PMC7578283 DOI: 10.1002/cjp2.170] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/05/2019] [Revised: 04/14/2020] [Accepted: 04/20/2020] [Indexed: 02/06/2023]
38
A potential prognostic prediction model of colon adenocarcinoma with recurrence based on prognostic lncRNA signatures. Hum Genomics 2020;14:24. [PMID: 32522293 PMCID: PMC7288433 DOI: 10.1186/s40246-020-00270-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2019] [Accepted: 05/13/2020] [Indexed: 12/18/2022]  Open
39
Wu G, Zhang M. A novel risk score model based on eight genes and a nomogram for predicting overall survival of patients with osteosarcoma. BMC Cancer 2020;20:456. [PMID: 32448271 PMCID: PMC7245838 DOI: 10.1186/s12885-020-06741-4] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Accepted: 03/12/2020] [Indexed: 12/19/2022]  Open
40
Huang Z, Johnson TS, Han Z, Helm B, Cao S, Zhang C, Salama P, Rizkalla M, Yu CY, Cheng J, Xiang S, Zhan X, Zhang J, Huang K. Deep learning-based cancer survival prognosis from RNA-seq data: approaches and evaluations. BMC Med Genomics 2020;13:41. [PMID: 32241264 PMCID: PMC7118823 DOI: 10.1186/s12920-020-0686-1] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]  Open
41
Xu Z, Sun Y, Xu T, Shi Y, Liang L, Liu P, Ge J. MGUS Predicts Worse Prognosis in Patients with Coronary Artery Disease. J Cardiovasc Transl Res 2020;13:806-812. [PMID: 31900894 PMCID: PMC7541390 DOI: 10.1007/s12265-019-09950-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/28/2019] [Accepted: 12/11/2019] [Indexed: 11/29/2022]
42
Yi B, Tang C, Tao Y, Zhao Z. Definition of a novel vascular invasion-associated multi-gene signature for predicting survival in patients with hepatocellular carcinoma. Oncol Lett 2020;19:147-158. [PMID: 31897125 PMCID: PMC6923904 DOI: 10.3892/ol.2019.11072] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2019] [Accepted: 09/11/2019] [Indexed: 12/12/2022]  Open
43
Yan Y, Zhou Q, Zhang M, Liu H, Lin J, Liu Q, Shi B, Wen K, Chen R, Wang J, Mao K, Xiao Z. Integrated Nomograms for Preoperative Prediction of Microvascular Invasion and Lymph Node Metastasis Risk in Hepatocellular Carcinoma Patients. Ann Surg Oncol 2019;27:1361-1371. [PMID: 31773517 DOI: 10.1245/s10434-019-08071-7] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2019] [Indexed: 12/24/2022]
44
Mubeen S, Hoyt CT, Gemünd A, Hofmann-Apitius M, Fröhlich H, Domingo-Fernández D. The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling. Front Genet 2019;10:1203. [PMID: 31824580 PMCID: PMC6883970 DOI: 10.3389/fgene.2019.01203] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2019] [Accepted: 10/30/2019] [Indexed: 02/04/2023]  Open
45
Cao XH, Han C, Glass LM, Kindman A, Obradovic Z. Time-to-event estimation by re-defining time. J Biomed Inform 2019;100:103326. [PMID: 31678589 DOI: 10.1016/j.jbi.2019.103326] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2019] [Revised: 09/05/2019] [Accepted: 10/28/2019] [Indexed: 11/26/2022]
46
Forghani R, Savadjiev P, Chatterjee A, Muthukrishnan N, Reinhold C, Forghani B. Radiomics and Artificial Intelligence for Biomarker and Prediction Model Development in Oncology. Comput Struct Biotechnol J 2019;17:995-1008. [PMID: 31388413 PMCID: PMC6667772 DOI: 10.1016/j.csbj.2019.07.001] [Citation(s) in RCA: 110] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2019] [Revised: 07/06/2019] [Accepted: 07/07/2019] [Indexed: 12/14/2022]  Open
47
Tang W, Putluri V, Ambati CR, Dorsey TH, Putluri N, Ambs S. Liver- and Microbiome-derived Bile Acids Accumulate in Human Breast Tumors and Inhibit Growth and Improve Patient Survival. Clin Cancer Res 2019;25:5972-5983. [PMID: 31296531 DOI: 10.1158/1078-0432.ccr-19-0094] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Revised: 05/24/2019] [Accepted: 07/08/2019] [Indexed: 01/08/2023]
48
Zhang A, Li A, He J, Wang M. LSCDFS-MKL: A multiple kernel based method for lung squamous cell carcinomas disease-free survival prediction with pathological and genomic data. J Biomed Inform 2019;94:103194. [PMID: 31048071 DOI: 10.1016/j.jbi.2019.103194] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2018] [Revised: 04/14/2019] [Accepted: 04/29/2019] [Indexed: 11/18/2022]
49
Xiao Z, Yan Y, Zhou Q, Liu H, Huang P, Zhou Q, Lai C, Zhang J, Wang J, Mao K. Development and external validation of prognostic nomograms in hepatocellular carcinoma patients: a population based study. Cancer Manag Res 2019;11:2691-2708. [PMID: 31118768 PMCID: PMC6489568 DOI: 10.2147/cmar.s191287] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2018] [Accepted: 02/25/2019] [Indexed: 12/14/2022]  Open
50
Mubeen S, Hoyt CT, Gemünd A, Hofmann-Apitius M, Fröhlich H, Domingo-Fernández D. The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling. Front Genet 2019. [PMID: 31824580 DOI: 10.3389/fgene.2019.01203/bibtex] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]  Open
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