Agricultural intensification exacerbates spillover effects on soil biogeochemistry in adjacent forest remnants

Soil chemistry and fungal communities are associated with dieback in an Endangered Australian shrub

BACKGROUND AND AIMS

Field surveys across known populations of the Endangered Persoonia hirsuta (Proteaceae) in 2019 suggested the soil environment may be associated with dieback in this species. To explore how characteristics of the soil environment (e.g., pathogens, nutrients, soil microbes) relate to dieback, a soil bioassay (Experiment 1) was conducted using field soils from two dieback effected P. hirsuta populations. Additionally, a nitrogen addition experiment (Experiment 2) was conducted to explore how the addition of soil nitrogen impacts dieback.

METHODS

The field soils were baited for pathogens, and soil physiochemical and microbial community characteristics were assessed and related to dieback among plants in the field and nursery-grown plants inoculated with the same field soils. Roots from inoculated plants were harvested to confirm the presence of soil pathogens and root-associated endophytes. Using these isolates, a dual culture antagonism assay was performed to examine competition among these microbes and identify candidate pathogens or pathogen antagonists.

RESULTS

Dieback among plants in the field and Experiment 1 was associated with soil physiochemical properties (nitrogen and potassium), and soil microbes were identified as significant indicators of healthy and dieback-affected plants. Plants in Experiment 2 exhibited greater dieback when treated with elevated nitrogen. Additionally, post-harvest culturing identified fungi and other soil pathogens, some of which exhibited antagonistic behavior.

CONCLUSION

This study identified candidate fungi and soil physiochemical properties associated with observed dieback and dieback resistance in an Endangered shrub and provides groundwork for further exploring what drives dieback and how it can be managed to promote the conservation of wild populations.

SUPPLEMENTARY INFORMATION

The online version contains supplementary material available at 10.1007/s11104-022-05724-7.

Local and downstream cumulative effects of traditional meadow management on stream-water quality and multiple riparian taxa

Water quality and riparian communities are among the most affected stream components by agriculture. However, little is known about the effects of riparian management for both aquatic and terrestrial taxa at different spatial scales. Here, we surveyed aquatic (diatoms) and terrestrial taxa (bryophytes, vascular plants, litter-dwelling snails, and ground and volant arthropods), to compare the abundance and richness of riparian taxa and chemical quality between reference and exposed sites in two stream reaches each of c. 3.5 km in northwestern Spain. Impacts in exposed sites were mainly due to traditional farming practices (TFPs), which included traditional meadow management, weirs built for now-unused water mills and sporadic timber harvesting. Therefore, we measured ten covariates and predictors related to the intensification of TFPs at local and within-stream scales and explored associations with riparian and water-quality measures to study the potential effects of TFPs in more detail. Reference and exposed sites did not differ significantly in water properties (diatom-biotic indices, conductivity, total organic carbon and nitrates), but exposed sites had less concentrations of soil metals Cd, Cu, Ni and Zn and less cover and richness of riparian trees, as inferred by the index QBR. Exposed sites had more volant insect decomposers and reference sites a greater abundance or richness of snails, ground predators and decomposers. Bryophyte richness was greater in reference sites. Our inferences may inform the joint cumulative downstream effects of weirs, meadow uses and riparian alterations but were generally consistent with most riparian taxa benefiting from having larger forested areas. Given the contrasting responses among taxa, we argue that land snails, terrestrial flies, and centipedes may be valuable additions to current riparian assessments mostly based on plants, beetles and spiders as indicator taxa. Our study also suggests caution when inferring farming impacts on streams from the surface area of pastoral land.

Livestock exclusion reduces the spillover effects of pastoral agriculture on soil bacterial communities in adjacent forest fragments

Forest-to-pasture conversion is known to cause global losses in plant and animal diversity, yet impacts of livestock management after such conversion on vital microbial communities in adjoining natural ecosystems remain poorly understood. We examined how pastoral land management practices impact soil microorganisms in adjacent native forest fragments, by comparing bacterial communities sampled along 21 transects bisecting pasture-forest boundaries. Our results revealed greater bacterial taxon richness in grazed pasture soils and the reduced dispersal of pasture-associated taxa into adjacent forest soils when land uses were separated by a boundary fence. Relative abundance distributions of forest-associated taxa (i.e., Proteobacteria and Nitrospirae) and a pasture-associated taxon (i.e., Firmicutes) also suggest a greater impact of pastoral land uses on forest fragment soil bacterial communities when no fence is present. Bacterial community richness and composition were most related to changes in soil physicochemical variables commonly associated with agricultural fertilization, including concentrations of Olsen P, total P, total Cd, delta ¹⁵ N and the ratio of C:P and N:P. Overall, our findings demonstrate clear, and potentially detrimental effects of agricultural disturbance on bacterial communities in forest soils adjacent to pastoral land. We provide evidence that simple land management decisions, such as livestock exclusion, can mitigate the effects of agriculture on adjacent soil microbial communities.

Human-Mediated Land Use Change Drives Intraspecific Plant Trait Variation

In the Anthropocene, more than three quarters of ice-free land has experienced some form of human-driven habitat modification, with agriculture dominating 40% of the Earth's surface. This land use change alters the quality, availability, and configuration of habitat resources, affecting the community composition of plants and insects, as well as their interactions with each other. Landscapes dominated by agriculture are known to support a lower abundance and diversity of pollinators and frequently larger populations of key herbivore pests. In turn, insect communities subsidized by agriculture may spill into remaining natural habitats with consequences for wild plants persisting in (semi) natural habitats. Adaptive responses by wild plants may allow them to persist in highly modified landscapes; yet how landscape-mediated variation in insect communities affects wild plant traits related to reproduction and defense remains largely unknown. We synthesize the evidence for plant trait changes across land use gradients and propose potential mechanisms by which landscape-mediated changes in insect communities may be driving these trait changes. Further, we present results from a common garden experiment on three wild Brassica species demonstrating variation in both defensive and reproductive traits along an agricultural land use gradient. Our framework illustrates the potential for plant adaptation under land use change and predicts how defense and reproduction trait expression may shift in low diversity landscapes. We highlight areas of future research into plant population and community effects of land use change.

Riparian Vegetation Structure Influences Terrestrial Invertebrate Communities in an Agricultural Landscape

Stream and terrestrial ecosystems are intimately connected by riparian zones that support high biodiversity but are also vulnerable to human impacts. Landscape disturbances, overgrazing, and diffuse pollution of agrochemicals threaten riparian biodiversity and the delivery of ecosystem services in agricultural landscapes. We assessed how terrestrial invertebrate communities respond to changes in riparian vegetation in Romanian agricultural catchments, with a focus on the role of forested riparian buffers. Riparian invertebrates were sampled in 10 paired sites, with each pair consisting of an unbuffered upstream reach and a downstream reach buffered with woody riparian vegetation. Our results revealed distinct invertebrate community structures in the two site types. Out of 33 invertebrate families, 13 were unique to either forested (6) or unbuffered (7) sites. Thomisidae, Clubionidae, Tetragnathidae, Curculionidae, Culicidae, and Cicadidae were associated with forested buffers, while Lycosidae, Chrysomelidae, Staphylinidae, Coccinellidae, Tettigoniidae, Formicidae, and Eutichuridae were more abundant in unbuffered sites. Despite statistically equivocal results, invertebrate diversity was generally higher in forested riparian buffers. Local riparian attributes significantly influenced patterns in invertebrate community composition. Our findings highlight the importance of local woody riparian buffers in maintaining terrestrial invertebrate diversity and their potential contribution as a multifunctional management tool in agricultural landscapes.

High density of white-faced capuchins (Cebus capucinus) and habitat quality in the Taboga Forest of Costa Rica

Across the globe, primates are threatened by human activities. This is especially true for species found in tropical dry forests, which remain largely unprotected. Our ability to predict primate abundance in the face of human activity depends on different species' sensitivities as well as on the characteristics of the forest itself. We studied plant and primate distribution and abundance in the Taboga Forest, a 516-ha tropical dry forest surrounded by agricultural fields in northwestern Costa Rica. We found that the density of white-faced capuchins (Cebus capucinus) at Taboga is 2-6 times higher than reported for other long-term white-faced capuchin sites. Using plant transects, we also found relatively high species richness, diversity, and equitability compared with other tropical dry forests. Edge transects (i.e., within 100 m from the forest boundary) differed from interior transects in two ways: (a) tree species associated with dry forest succession were well-established in the edge and (b) canopy cover in the edge was maintained year-round, while the interior forest was deciduous. Sighting rates for capuchins were higher near water sources but did not vary between the edge and interior forest. For comparison, we also found the same to be true for the only other primate in the Taboga Forest, mantled howler monkeys (Alouatta palliata). Year-round access to water might explain why some primate species can flourish even alongside anthropogenic disturbance. Forest fragments like Taboga may support high densities of some species because they provide a mosaic of habitats and key resources that buffer adverse ecological conditions.

Forest fragmentation and impacts of intensive agriculture: Responses from different tree functional groups

Agricultural landscapes are seen as areas of extreme importance for studying and developing strategies which integrate biodiversity conservation and ecosystem services with food production. The main strategies for intensifying agriculture are based on conventional agricultural practices of frequently using inputs for fertilization and correcting soil pH. Some studies show that these practices generate impacts on nearby forest fragments through soil contamination and increasing nutrient content. The objective of this study was to identify the impacts on the functional groups of sciophilous (late successional/shade-tolerant species) and heliophilous (pioneer/sun-loving) species of a tree community of 14 forest fragments near pasture areas and agricultural areas under conventional practices, raising the hypothesis that higher-fertility forest fragments adjacent to intensive agriculture modify the floristic composition of the tree community. Consequently, this study is based on the following questions: i) Do forest fragments within intensive farming environments present differences in floristic composition of species?; ii) Does the soil fertility influence the tree species composition?; iii) Which variables influence species abundance and richness in the forest fragments with different types of use around their environment? The floristic composition of fragments close to agricultural areas are more similar to each other than the composition of fragments close to pasture areas. Furthermore, the General Linear Model (GLM) results show a clear influence of the intensive farming environment on the richness and abundance of the two functional groups in the forest fragments, directly benefiting the abundance of heliophilous species, which are also benefited by the greater declivity and smaller fragment area, while the abundance of sciophytes is negatively correlated with these last two variables. The increase of calcium content is beneficial for the richness of heliophilous species, while the increase in phosphorus content influences a reduction in the richness of sciophyte species, which also strongly respond to the isolation between fragments. The results indicate a dominance trend of pioneer species in fragments with nutritionally enriched soils, providing evidence that the intense adoption of inputs in cultivated areas causes concrete impacts on the diversity of the tree community.

The environmental costs and benefits of high-yield farming

How we manage farming and food systems to meet rising demand is pivotal to the future of biodiversity. Extensive field data suggest impacts on wild populations would be greatly reduced through boosting yields on existing farmland so as to spare remaining natural habitats. High-yield farming raises other concerns because expressed per unit area it can generate high levels of externalities such as greenhouse gas (GHG) emissions and nutrient losses. However, such metrics underestimate the overall impacts of lower-yield systems, so here we develop a framework that instead compares externality and land costs per unit production. Applying this to diverse datasets describing the externalities of four major farm sectors reveals that, rather than involving trade-offs, the externality and land costs of alternative production systems can co-vary positively: per unit production, land-efficient systems often produce lower externalities. For GHG emissions these associations become more strongly positive once forgone sequestration is included. Our conclusions are limited: remarkably few studies report externalities alongside yields; many important externalities and farming systems are inadequately measured; and realising the environmental benefits of high-yield systems typically requires additional measures to limit farmland expansion. Yet our results nevertheless suggest that trade-offs among key cost metrics are not as ubiquitous as sometimes perceived.

Compositional diversity of rehabilitated tropical lands supports multiple ecosystem services and buffers uncertainties

High landscape diversity is assumed to increase the number and level of ecosystem services. However, the interactions between ecosystem service provision, disturbance and landscape composition are poorly understood. Here we present a novel approach to include uncertainty in the optimization of land allocation for improving the provision of multiple ecosystem services. We refer to the rehabilitation of abandoned agricultural lands in Ecuador including two types of both afforestation and pasture rehabilitation, together with a succession option. Our results show that high compositional landscape diversity supports multiple ecosystem services (multifunction effect). This implicitly provides a buffer against uncertainty. Our work shows that active integration of uncertainty is only important when optimizing single or highly correlated ecosystem services and that the multifunction effect on landscape diversity is stronger than the uncertainty effect. This is an important insight to support a land-use planning based on ecosystem services.

Land use becomes more diverse when it considers uncertain interactions of multiple ecosystem services. Here, Knoke and colleagues show that uncertainty plays a larger role if ecosystem services are optimized only for a single service, or if services correlate.

Magnesium capability to attenuate the toxicity of aluminum on the growth of Saccharomyces cerevisiae PE-2

Summary The magnesium (Mg) capability to attenuate the toxicity of aluminum (Al) for the trehalose content, anaerobic growth, viability and budding rate of Saccharomyces cerevisiae, was studied in this work. Fermentations were carried out in triplicate with sterilized and diluted sugar cane media (4% total reducing sugars/pH 4.0) containing different Al (0.0, 50, 100 and 150 mg L-1) and Mg (0.0, 50 and 100 mg L-1) concentrations. The media were inoculated with 1 mL of 1% (wet basis) yeast suspension and incubated at 30ºC, 70 rpm for 20 hours in orbital shaker. At specific times during fermentation portions of cell suspension were taken out and the biomass concentration, yeast viability, budding rate and trehalose content on cells determined. The increase of Al levels, from 0.0 up to 150 mg L-1, showed a reduction on the yeast growth of approximately 95%, 55% and 18% as Mg increased from 0.0 to 50 and 100 mg L-1, respectively. The trehalose content experienced its lowest reduction when greater amounts of Mg were added to the fermentation process. Cell viability showed greater reductions as the content of Al in the media increased. Magnesium effectively protected yeast cells against the deleterious effects of Al on cell growth, viability, budding and trehalose content.