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Garcia-Dias R, Scarpazza C, Baecker L, Vieira S, Pinaya WHL, Corvin A, Redolfi A, Nelson B, Crespo-Facorro B, McDonald C, Tordesillas-Gutiérrez D, Cannon D, Mothersill D, Hernaus D, Morris D, Setien-Suero E, Donohoe G, Frisoni G, Tronchin G, Sato J, Marcelis M, Kempton M, van Haren NEM, Gruber O, McGorry P, Amminger P, McGuire P, Gong Q, Kahn RS, Ayesa-Arriola R, van Amelsvoort T, Ortiz-García de la Foz V, Calhoun V, Cahn W, Mechelli A. Neuroharmony: A new tool for harmonizing volumetric MRI data from unseen scanners. Neuroimage 2020; 220:117127. [PMID: 32634595 PMCID: PMC7573655 DOI: 10.1016/j.neuroimage.2020.117127] [Citation(s) in RCA: 43] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2020] [Revised: 06/08/2020] [Accepted: 06/30/2020] [Indexed: 02/05/2023] Open
Abstract
•We present Neuroharmony, a harmonization tool for images from unseen scanners. •We developed Neuroharmony using a total of 15,026 sMRI images. •The tool was able to reduce scanner-related bias from unseen scans. •Neuroharmony represents a significant step towards imaging-based clinical tools. •Neuroharmony is available at https://github.com/garciadias/Neuroharmony .
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Affiliation(s)
- Rafael Garcia-Dias
- Department of Psychosis Studies, Institute of Psychiatry, Psychology & Neuroscience, King's College London, 16 De Crespigny Park, SE5 8AF, United Kingdom.
| | - Cristina Scarpazza
- Department of Psychosis Studies, Institute of Psychiatry, Psychology & Neuroscience, King's College London, 16 De Crespigny Park, SE5 8AF, United Kingdom; Department of General Psychology, University of Padova, Via Venezia 8, Padova, Italy
| | - Lea Baecker
- Department of Psychosis Studies, Institute of Psychiatry, Psychology & Neuroscience, King's College London, 16 De Crespigny Park, SE5 8AF, United Kingdom
| | - Sandra Vieira
- Department of Psychosis Studies, Institute of Psychiatry, Psychology & Neuroscience, King's College London, 16 De Crespigny Park, SE5 8AF, United Kingdom
| | - Walter H L Pinaya
- Department of Psychosis Studies, Institute of Psychiatry, Psychology & Neuroscience, King's College London, 16 De Crespigny Park, SE5 8AF, United Kingdom; Center of Mathematics, Computing, and Cognition, Universidade Federal do ABC, Santo André, Brazil
| | - Aiden Corvin
- Department of Psychiatry, School of Medicine, Trinity College Dublin, Dublin, Ireland
| | - Alberto Redolfi
- Laboratory of Neuroinformatics, IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy
| | - Barnaby Nelson
- Orygen, The National Centre of Excellence in Youth Mental Health, University of Melbourne, Melbourne, Victoria, Australia; Centre for Youth Mental Health, University of Melbourne, Melbourne, Victoria, Australia
| | - Benedicto Crespo-Facorro
- Centro Investigación Biomédica en Red de Salud Mental (CIBERSAM), Spain; Departamento de Psiquiatria, Universidad de Sevilla, Instituto de Biomedicina de Sevilla (IBIS), Spain; Hospital Universitario Virgen del Rocío, Sevilla, Spain; Department of Psychiatry, Marqués de Valdecilla University Hospital, IDIVAL, School of Medicine, University of Cantabria, Santander, Spain
| | - Colm McDonald
- Clinical Neuroimaging Laboratory, School of Medicine & Center for Neuroimaging and Cognitive Genomics, NUI Galway University, Galway, Ireland
| | - Diana Tordesillas-Gutiérrez
- Centro Investigación Biomédica en Red de Salud Mental (CIBERSAM), Spain; Neuroimaging Unit, Technological Facilities, Valdecilla Biomedical Research Institute IDIVAL, Spain
| | - Dara Cannon
- Clinical Neuroimaging Laboratory, School of Medicine & Center for Neuroimaging and Cognitive Genomics, NUI Galway University, Galway, Ireland
| | - David Mothersill
- School of Psychology & Center for Neuroimaging and Cognitive Genomics, NUI Galway University, Galway, Ireland
| | - Dennis Hernaus
- Department of Psychiatry and Neuropsychology, School of Mental Health and Neuroscience, Maastricht, the Netherlands
| | - Derek Morris
- Discipline of Biochemistry & Center for Neuroimaging and Cognitive Genomics, NUI Galway University, Galway, Ireland
| | - Esther Setien-Suero
- Centro Investigación Biomédica en Red de Salud Mental (CIBERSAM), Spain; Department of Psychiatry, Marqués de Valdecilla University Hospital, IDIVAL, School of Medicine, University of Cantabria, Santander, Spain
| | - Gary Donohoe
- School of Psychology & Center for Neuroimaging and Cognitive Genomics, NUI Galway University, Galway, Ireland
| | - Giovanni Frisoni
- Memory Clinic and LANVIE-Laboratory of Neuroimaging of Ageing, University Hospitals and University of Geneva, Geneva, Switzerland; Laboratory of Alzheimer's Neuroimaging and Epidemiology - LANE, IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy
| | - Giulia Tronchin
- Clinical Neuroimaging Laboratory, School of Medicine & Center for Neuroimaging and Cognitive Genomics, NUI Galway University, Galway, Ireland
| | - João Sato
- Center of Mathematics, Computing, and Cognition, Universidade Federal do ABC, Santo André, Brazil
| | - Machteld Marcelis
- Department of Psychiatry and Neuropsychology, School of Mental Health and Neuroscience, Maastricht, the Netherlands
| | - Matthew Kempton
- Department of Psychosis Studies, Institute of Psychiatry, Psychology & Neuroscience, King's College London, 16 De Crespigny Park, SE5 8AF, United Kingdom
| | - Neeltje E M van Haren
- Department of Child and Adolescent Psychiatry/Psychology, Erasmus Medical Centre - Sophia Children's Hospital, Rotterdam, Netherlands
| | - Oliver Gruber
- Section for Experimental Psychopathology and Neuroimaging, Department of General Psychiatry, Heidelberg University, Germany; Center for Translational Research in Systems Neuroscience and Psychiatry, Department of Psychiatry and Psychotherapy, University Medical Center Göttingen, Germany
| | - Patrick McGorry
- Orygen, The National Centre of Excellence in Youth Mental Health, University of Melbourne, Melbourne, Victoria, Australia; Centre for Youth Mental Health, University of Melbourne, Melbourne, Victoria, Australia
| | - Paul Amminger
- Orygen, The National Centre of Excellence in Youth Mental Health, University of Melbourne, Melbourne, Victoria, Australia; Centre for Youth Mental Health, University of Melbourne, Melbourne, Victoria, Australia
| | - Philip McGuire
- Department of Psychosis Studies, Institute of Psychiatry, Psychology & Neuroscience, King's College London, 16 De Crespigny Park, SE5 8AF, United Kingdom
| | - Qiyong Gong
- Huaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu, China; Psychoradiology Research Unit of Chinese Academy of Medical Sciences, West China Hospital of Sichuan University, Chengdu, Sichuan, China; Department of Radiology, Shengjing Hospital of China Medical University, Shenyang, Liaoning, China
| | - René S Kahn
- Department of Psychiatry, University Medical Center Utrecht Brain Center, Utrecht, the Netherlands; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA
| | - Rosa Ayesa-Arriola
- Centro Investigación Biomédica en Red de Salud Mental (CIBERSAM), Spain; Department of Psychiatry, Marqués de Valdecilla University Hospital, IDIVAL, School of Medicine, University of Cantabria, Santander, Spain
| | - Therese van Amelsvoort
- Department of Psychiatry and Neuropsychology, School of Mental Health and Neuroscience, Maastricht, the Netherlands
| | - Victor Ortiz-García de la Foz
- Centro Investigación Biomédica en Red de Salud Mental (CIBERSAM), Spain; Department of Psychiatry, Marqués de Valdecilla University Hospital, IDIVAL, School of Medicine, University of Cantabria, Santander, Spain
| | - Vince Calhoun
- Tri-institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia; State University, Georgia Institute of Technology, Emory University, Atlanta, GA, USA
| | - Wiepke Cahn
- Department of Psychiatry, University Medical Center Utrecht Brain Center, Utrecht, the Netherlands
| | - Andrea Mechelli
- Department of Psychosis Studies, Institute of Psychiatry, Psychology & Neuroscience, King's College London, 16 De Crespigny Park, SE5 8AF, United Kingdom
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Schapiro AC, McDevitt EA, Rogers TT, Mednick SC, Norman KA. Human hippocampal replay during rest prioritizes weakly learned information and predicts memory performance. Nat Commun 2018; 9:3920. [PMID: 30254219 PMCID: PMC6156217 DOI: 10.1038/s41467-018-06213-1] [Citation(s) in RCA: 124] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2018] [Accepted: 08/20/2018] [Indexed: 12/20/2022] Open
Abstract
The hippocampus replays experiences during quiet rest periods, and this replay benefits subsequent memory. A critical open question is how memories are prioritized for this replay. We used functional magnetic resonance imaging (fMRI) pattern analysis to track item-level replay in the hippocampus during an awake rest period after participants studied 15 objects and completed a memory test. Objects that were remembered less well were replayed more during the subsequent rest period, suggesting a prioritization process in which weaker memories—memories most vulnerable to forgetting—are selected for replay. In a second session 12 hours later, more replay of an object during a rest period predicted better subsequent memory for that object. Replay predicted memory improvement across sessions only for participants who slept during that interval. Our results provide evidence that replay in the human hippocampus prioritizes weakly learned information, predicts subsequent memory performance, and relates to memory improvement across a delay with sleep. The hippocampus is known to 'replay' experiences and memories during rest periods, but it is unclear how particular memories are prioritized for replay. Here, the authors show that information that is remembered less well is replayed more often, suggesting that weaker memories are selected for replay.
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Affiliation(s)
- Anna C Schapiro
- Department of Psychiatry, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, MA, 02215, USA.
| | - Elizabeth A McDevitt
- Princeton Neuroscience Institute and Department of Psychology, Princeton University, Princeton, NJ, 08544, USA
| | - Timothy T Rogers
- Department of Psychology, University of Wisconsin-Madison, Madison, WI, 53706, USA
| | - Sara C Mednick
- Department of Cognitive Sciences, University of California-Irvine, Irvine, CA, 92617, USA
| | - Kenneth A Norman
- Princeton Neuroscience Institute and Department of Psychology, Princeton University, Princeton, NJ, 08544, USA
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