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Diaz-Baca JA, Salaghi A, Fatehi P. Generation of Sulfonated Lignin-Starch Polymer and Its Use As a Flocculant. Biomacromolecules 2023; 24:1400-1416. [PMID: 36802502 DOI: 10.1021/acs.biomac.2c01437] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2023]
Abstract
This paper reports the polymerization of tall oil lignin (TOL), starch, and 2-methyl-2-propene-1-sulfonic acid sodium salt (MPSA), a sulfonate-containing monomer, in a three-component system to generate flocculants for colloidal systems. By utilizing the advanced 1H, COSY, HSQC, HSQC-TOCSY, and HMBC NMR techniques, it was confirmed that the phenolic substructures of TOL and the anhydroglucose unit of starch were covalently polymerized by the monomer to generate the three-block copolymer. The molecular weight, radius of gyration, and shape factor of the copolymers were fundamentally correlated to the structure of lignin and starch, as well as the polymerization outcomes. The deposition behavior of the copolymer, studied by a quartz crystal microbalance with dissipation (QCM-D) analysis, revealed that the copolymer with a larger molecular weight (ALS-5) deposited more and generated more compact adlayer than the copolymer with a smaller molecular weight on a solid surface. Owing to its higher charge density, molecular weight, and extended coil-like structure, ALS-5 produced larger flocs with faster sedimentation in the colloidal systems, regardless of the extent of agitation and gravitational force. The results of this work provide a new approach to preparing a lignin-starch polymer, i.e., a sustainable biomacromolecule with excellent flocculation performance in colloidal systems.
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Affiliation(s)
- Jonathan A Diaz-Baca
- Biorefining Research Institute and Chemical Engineering Department, Lakehead University, 955 Oliver Road, Thunder Bay, Ontario P7B SE1, Canada
| | - Ayyoub Salaghi
- Biorefining Research Institute and Chemical Engineering Department, Lakehead University, 955 Oliver Road, Thunder Bay, Ontario P7B SE1, Canada
| | - Pedram Fatehi
- Biorefining Research Institute and Chemical Engineering Department, Lakehead University, 955 Oliver Road, Thunder Bay, Ontario P7B SE1, Canada
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Haque S, Singh R, Harakeh S, Teklemariam AD, Tayeb HH, Deen PR, Srivastava UC, Srivastava M. Green synthesis of nanostructures from rice straw food waste to improve the antimicrobial efficiency: New insight. Int J Food Microbiol 2023; 386:110016. [PMID: 36435097 DOI: 10.1016/j.ijfoodmicro.2022.110016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2022] [Revised: 10/19/2022] [Accepted: 11/07/2022] [Indexed: 11/13/2022]
Abstract
Applications for nanotechnology, which is constantly gaining prominence, have been found in a variety of industrial applications. Due to the multiple benefits associated with it, including an eco-friendly, pollution-free, cost-effective, and non-toxic synthesis method, the green way to synthesize nanostructures utilizing waste biomasses has become one of the key focuses of the current researches globally. Additionally, lignocellulasic biomass (LCB), which is a waste of the food crops, can be used as one of the potential substrates for the synthesis of a variety of nanostructures. Among different types of LCB, rice straw is a potential food waste biomass and can be efficiently employed during the synthesis of different types of nanostructures for a range of technological applications. Here, diverse phenolic compounds found in rice straw as well as reducing sugars can be used as natural reducing and capping agents to prepare a range of nanostructures. Based on the aforementioned facts, the objective of this review is to investigate the viability of using rice straw to produce nanostructured materials using rice straw as a renewable biosource following an environmentally friendly method. Additionally, it is noted that various organic compounds present on the surface of nanostructures produced using rice straw extract/hydrolyzate through a green approach may be more successful in terms of antibacterial efficacy, which might be of considerable interest for a variety of biomedical applications. Based on the possibility of enhancing the antimicrobial activity of developed nanostructures, the review also provides overview on the feasibility, characteristics, and availability of using rice straw extract in the synthesis of nanostructures. Additionally, the constraints of the present and potential futures of the green synthesis methods using rice straw wastes have been explored.
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Affiliation(s)
- Shafiul Haque
- Research and Scientific Studies Unit, College of Nursing and Allied Health Sciences, Jazan University, Jazan 45142, Saudi Arabia
| | - Rajeev Singh
- Department of Environmental Studies, Satyawati College, University of Delhi, Delhi 110052, India; Department of Environmental Science, Jamia Millia Islamia (A Central University), New Delhi 110025, India.
| | - Steve Harakeh
- King Fahd Medical Research Center and Yousef Abdullatif Jameel Chair of Prophetic Medicine Application, Faculty of Medicine, King Abdulaziz University, Jeddah, Saudi Arabia
| | - Addisu Demeke Teklemariam
- Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia
| | - Hossam H Tayeb
- Department of Medical Laboratory Sciences, Faculty of Applied Medical Sciences, King Abdulaziz University, Jeddah 21589, Saudi Arabia; Nanomedicine Unit, Center of Innovation in Personalized Medicine, King Abdulaziz University, 21589 Jeddah, Saudi Arabia
| | - Prakash Ranjan Deen
- Department of Physics, Purnea College, Purnea University, Purnea, Bihar 854301, India
| | - Umesh Chandra Srivastava
- Department of Physics, Amity Institute of Applied Sciences, Amity University, Noida, UP 201303, India
| | - Manish Srivastava
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU), Varanasi 221005, India; LCB Fertilizer Pvt. Ltd., Shyam Vihar Phase 2, Rani Sati Mandir Road, Lachchhipur, Gorakhpur, Uttar Pradesh-273015.
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Theillet FX, Luchinat E. In-cell NMR: Why and how? PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2022; 132-133:1-112. [PMID: 36496255 DOI: 10.1016/j.pnmrs.2022.04.002] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Revised: 04/19/2022] [Accepted: 04/27/2022] [Indexed: 06/17/2023]
Abstract
NMR spectroscopy has been applied to cells and tissues analysis since its beginnings, as early as 1950. We have attempted to gather here in a didactic fashion the broad diversity of data and ideas that emerged from NMR investigations on living cells. Covering a large proportion of the periodic table, NMR spectroscopy permits scrutiny of a great variety of atomic nuclei in all living organisms non-invasively. It has thus provided quantitative information on cellular atoms and their chemical environment, dynamics, or interactions. We will show that NMR studies have generated valuable knowledge on a vast array of cellular molecules and events, from water, salts, metabolites, cell walls, proteins, nucleic acids, drugs and drug targets, to pH, redox equilibria and chemical reactions. The characterization of such a multitude of objects at the atomic scale has thus shaped our mental representation of cellular life at multiple levels, together with major techniques like mass-spectrometry or microscopies. NMR studies on cells has accompanied the developments of MRI and metabolomics, and various subfields have flourished, coined with appealing names: fluxomics, foodomics, MRI and MRS (i.e. imaging and localized spectroscopy of living tissues, respectively), whole-cell NMR, on-cell ligand-based NMR, systems NMR, cellular structural biology, in-cell NMR… All these have not grown separately, but rather by reinforcing each other like a braided trunk. Hence, we try here to provide an analytical account of a large ensemble of intricately linked approaches, whose integration has been and will be key to their success. We present extensive overviews, firstly on the various types of information provided by NMR in a cellular environment (the "why", oriented towards a broad readership), and secondly on the employed NMR techniques and setups (the "how", where we discuss the past, current and future methods). Each subsection is constructed as a historical anthology, showing how the intrinsic properties of NMR spectroscopy and its developments structured the accessible knowledge on cellular phenomena. Using this systematic approach, we sought i) to make this review accessible to the broadest audience and ii) to highlight some early techniques that may find renewed interest. Finally, we present a brief discussion on what may be potential and desirable developments in the context of integrative studies in biology.
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Affiliation(s)
- Francois-Xavier Theillet
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198 Gif-sur-Yvette, France.
| | - Enrico Luchinat
- Dipartimento di Scienze e Tecnologie Agro-Alimentari, Alma Mater Studiorum - Università di Bologna, Piazza Goidanich 60, 47521 Cesena, Italy; CERM - Magnetic Resonance Center, and Neurofarba Department, Università degli Studi di Firenze, 50019 Sesto Fiorentino, Italy
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Sui W, Li S, Zhou X, Dou Z, Liu R, Wu T, Jia H, Wang G, Zhang M. Potential Hydrothermal-Humification of Vegetable Wastes by Steam Explosion and Structural Characteristics of Humified Fractions. Molecules 2021; 26:molecules26133841. [PMID: 34202485 PMCID: PMC8270290 DOI: 10.3390/molecules26133841] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Revised: 06/19/2021] [Accepted: 06/20/2021] [Indexed: 11/16/2022] Open
Abstract
In this work, steam explosion (SE) was exploited as a potential hydrothermal-humification process of vegetable wastes to deconstruct their structure and accelerate their decomposition to prepare humified substances. Results indicated that the SE process led to the removal of hemicellulose, re-condensation of lignin, degradation of the cellulosic amorphous region, and the enhancement of thermal stability of broccoli wastes, which provided transformable substrates and a thermal-acidic reaction environment for humification. After SE treatment, total humic substances (HS), humic acids (HAs), and fulvic acids (FAs) contents of broccoli samples accounted for up to 198.3 g/kg, 42.3 g/kg, and 166.6 g/kg, and their purification were also facilitated. With the increment of SE severity, structural characteristics of HAs presented the loss of aliphatic compounds, carbohydrates, and carboxylic acids and the enrichment of aromatic structures and N-containing groups. Lignin substructures were proved to be the predominant aromatic structures and gluconoxylans were the main carbohydrates associated with lignin in HAs, both of their signals were enhanced by SE. Above results suggested that SE could promote the decomposition of easily biodegradable matters and further polycondensation, aromatization, and nitrogen-fixation reactions during humification, which were conducive to the formation of HAs.
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Affiliation(s)
- Wenjie Sui
- State Key Laboratory of Food Nutrition and Safety, College of Food Science and Engineering, Tianjin University of Science & Technology, Tianjin 300457, China; (W.S.); (S.L.); (X.Z.); (Z.D.); (R.L.); (T.W.)
| | - Shunqin Li
- State Key Laboratory of Food Nutrition and Safety, College of Food Science and Engineering, Tianjin University of Science & Technology, Tianjin 300457, China; (W.S.); (S.L.); (X.Z.); (Z.D.); (R.L.); (T.W.)
| | - Xiaodan Zhou
- State Key Laboratory of Food Nutrition and Safety, College of Food Science and Engineering, Tianjin University of Science & Technology, Tianjin 300457, China; (W.S.); (S.L.); (X.Z.); (Z.D.); (R.L.); (T.W.)
| | - Zishan Dou
- State Key Laboratory of Food Nutrition and Safety, College of Food Science and Engineering, Tianjin University of Science & Technology, Tianjin 300457, China; (W.S.); (S.L.); (X.Z.); (Z.D.); (R.L.); (T.W.)
| | - Rui Liu
- State Key Laboratory of Food Nutrition and Safety, College of Food Science and Engineering, Tianjin University of Science & Technology, Tianjin 300457, China; (W.S.); (S.L.); (X.Z.); (Z.D.); (R.L.); (T.W.)
| | - Tao Wu
- State Key Laboratory of Food Nutrition and Safety, College of Food Science and Engineering, Tianjin University of Science & Technology, Tianjin 300457, China; (W.S.); (S.L.); (X.Z.); (Z.D.); (R.L.); (T.W.)
| | - Hongyu Jia
- Shandong Academy of Agricultural Sciences Institute of Agricultural Resources and Environment, Jinan 250132, China
- Correspondence: (H.J.); (G.W.); (M.Z.); Tel.: +86-022-60912430 (M.Z.)
| | - Guanhua Wang
- Tianjin Key Laboratory of Pulp and Paper, College of Light Industry Science and Engineering, Tianjin University of Science and Technology, Tianjin 300457, China
- Correspondence: (H.J.); (G.W.); (M.Z.); Tel.: +86-022-60912430 (M.Z.)
| | - Min Zhang
- State Key Laboratory of Food Nutrition and Safety, College of Food Science and Engineering, Tianjin University of Science & Technology, Tianjin 300457, China; (W.S.); (S.L.); (X.Z.); (Z.D.); (R.L.); (T.W.)
- College of Food Science and Bioengineering, Tianjin Agricultural University, Tianjin 300392, China
- Correspondence: (H.J.); (G.W.); (M.Z.); Tel.: +86-022-60912430 (M.Z.)
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Breeding Targets to Improve Biomass Quality in Miscanthus. Molecules 2021; 26:molecules26020254. [PMID: 33419100 PMCID: PMC7825460 DOI: 10.3390/molecules26020254] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2020] [Revised: 12/31/2020] [Accepted: 01/01/2021] [Indexed: 01/02/2023] Open
Abstract
Lignocellulosic crops are attractive bioresources for energy and chemicals production within a sustainable, carbon circular society. Miscanthus is one of the perennial grasses that exhibits great potential as a dedicated feedstock for conversion to biobased products in integrated biorefineries. The current biorefinery strategies are primarily focused on polysaccharide valorization and require severe pretreatments to overcome the lignin barrier. The need for such pretreatments represents an economic burden and impacts the overall sustainability of the biorefinery. Hence, increasing its efficiency has been a topic of great interest. Inversely, though pretreatment will remain an essential step, there is room to reduce its severity by optimizing the biomass composition rendering it more exploitable. Extensive studies have examined the miscanthus cell wall structures in great detail, and pinpointed those components that affect biomass digestibility under various pretreatments. Although lignin content has been identified as the most important factor limiting cell wall deconstruction, the effect of polysaccharides and interaction between the different constituents play an important role as well. The natural variation that is available within different miscanthus species and increased understanding of biosynthetic cell wall pathways have specified the potential to create novel accessions with improved digestibility through breeding or genetic modification. This review discusses the contribution of the main cell wall components on biomass degradation in relation to hydrothermal, dilute acid and alkaline pretreatments. Furthermore, traits worth advancing through breeding will be discussed in light of past, present and future breeding efforts.
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Jamil F, Aslam M, Al-Muhtaseb AH, Bokhari A, Rafiq S, Khan Z, Inayat A, Ahmed A, Hossain S, Khurram MS, Abu Bakar MS. Greener and sustainable production of bioethylene from bioethanol: current status, opportunities and perspectives. REV CHEM ENG 2020. [DOI: 10.1515/revce-2019-0026] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Abstract
The economic value of bioethylene produced from bioethanol dehydration is remarkable due to its extensive usage in the petrochemical industry. Bioethylene is produced through several routes, such as steam cracking of hydrocarbons from fossil fuel and dehydration of bioethanol, which can be produced through fermentation processes using renewable substrates such as glucose and starch. The rise in oil prices, environmental issues due to toxic emissions caused by the combustion of fossil fuel and depletion of fossil fuel resources have led a demand for an alternative pathway to produce green ethylene. One of the abundant alternative renewable sources for bioethanol production is biomass. Bioethanol produced from biomass is alleged to be a competitive alternative to bioethylene production as it is environmentally friendly and economical. In recent years, many studies have investigated catalysts and new reaction engineering pathways to enhance the bioethylene yield and to lower reaction temperature to drive the technology toward economic feasibility and practicality. This paper critically reviews bioethylene production from bioethanol in the presence of different catalysts, reaction conditions and reactor technologies to achieve a higher yield and selectivity of ethylene. Techno-economic and environmental assessments are performed to further development and commercialization. Finally, key issues and perspectives that require utmost attention to facilitate global penetration of technology are highlighted.
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Affiliation(s)
- Farrukh Jamil
- Department of Chemical Engineering , COMSATS University Islamabad (CUI) , Lahore Campus, Defense Road, Off Raiwind Road , Lahore , Pakistan
| | - Muhammad Aslam
- Department of Chemical Engineering , COMSATS University Islamabad (CUI) , Lahore Campus, Defense Road, Off Raiwind Road , Lahore , Pakistan
| | - Ala’a H. Al-Muhtaseb
- Department of Petroleum and Chemical Engineering , College of Engineering, Sultan Qaboos University , Muscat , Oman
| | - Awais Bokhari
- Department of Chemical Engineering , COMSATS University Islamabad (CUI) , Lahore Campus, Defense Road, Off Raiwind Road , Lahore , Pakistan
| | - Sikander Rafiq
- Department of Chemical, Polymer and Composite Material Engineering , University of Engineering and Technology , Lahore – New Campus , Pakistan
| | - Zakir Khan
- Department of Chemical Engineering , COMSATS University Islamabad (CUI) , Lahore Campus, Defense Road, Off Raiwind Road , Lahore , Pakistan
| | - Abrar Inayat
- Department of Sustainable and Renewable Energy Engineering , University of Sharjah , 27272 Sharjah , United Arab Emirates
| | - Ashfaq Ahmed
- Department of Chemical Engineering , COMSATS University Islamabad (CUI) , Lahore Campus, Defense Road, Off Raiwind Road , Lahore , Pakistan
- School of Environmental Engineering , University of Seoul , Seoul, 02504 , Republic of Korea
| | - Shakhawat Hossain
- Department of Industrial and Production Engineering , Jashore University of Science and Technology , Jashore-7408 , Bangladesh
| | - Muhammad Shahzad Khurram
- Department of Chemical Engineering , COMSATS University Islamabad (CUI) , Lahore Campus, Defense Road, Off Raiwind Road , Lahore , Pakistan
| | - Muhammad S. Abu Bakar
- Faculty of Integrated Technologies , Universiti Brunei Darussalam , Jalan Tungku Link , BE1410, Gadong , Brunei Darussalam
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Bioconversion of rice straw by synergistic effect of in-house produced ligno-hemicellulolytic enzymes for enhanced bioethanol production. ACTA ACUST UNITED AC 2020. [DOI: 10.1016/j.biteb.2019.100352] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Amoah J, Hasunuma T, Ogino C, Kondo A. 5-Hydroxymethylfurfural production from salt-induced photoautotrophically cultivated Chlorella sorokiniana. Biochem Eng J 2019. [DOI: 10.1016/j.bej.2018.11.014] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Kobayashi J, Sasaki D, Bamba T, Hasunuma T, Kondo A. Sustainable production of glutathione from lignocellulose-derived sugars using engineered Saccharomyces cerevisiae. Appl Microbiol Biotechnol 2018; 103:1243-1254. [DOI: 10.1007/s00253-018-9493-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2018] [Revised: 10/24/2018] [Accepted: 10/29/2018] [Indexed: 12/15/2022]
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Saito Y, Tsuchida H, Matsumoto T, Makita Y, Kawashima M, Kikuchi J, Matsui M. Screening of fungi for decomposition of lignin-derived products from Japanese cedar. J Biosci Bioeng 2018; 126:573-579. [DOI: 10.1016/j.jbiosc.2018.05.001] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2017] [Revised: 04/23/2018] [Accepted: 05/04/2018] [Indexed: 11/24/2022]
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Teramura H, Sasaki K, Oshima T, Kawaguchi H, Ogino C, Sazuka T, Kondo A. Effective usage of sorghum bagasse: Optimization of organosolv pretreatment using 25% 1-butanol and subsequent nanofiltration membrane separation. BIORESOURCE TECHNOLOGY 2018; 252:157-164. [PMID: 29324275 DOI: 10.1016/j.biortech.2017.12.100] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2017] [Revised: 12/27/2017] [Accepted: 12/28/2017] [Indexed: 06/07/2023]
Abstract
We investigated the use of low concentrations of butanol (<40%, all v/v) as an organosolv pretreatment to fractionate lignocellulosic biomass into cellulose, hemicellulose, and lignin. The pretreatment conditions were optimized for sorghum bagasse by focusing on four parameters: butanol concentration, sulfuric acid concentration, pretreatment temperature, and pretreatment time. A butanol concentration of 25% or higher together with 0.5% or higher acid was effective for removing lignin while retaining most of the cellulose in the solid fraction. The highest cellulose (84.9%) and low lignin (15.3%) content were obtained after pretreatment at 200 °C for 60 min. Thus, pretreatment comprising 25% butanol, 0.5% acid, 200 °C, and 60 min process time was considered optimal. Enzymatic saccharification and fermentation by Saccharomyces cerevisiae produced 61.9 g/L ethanol from 200 g/L solid fraction obtained following pretreatment, and 10.2 g/L ethanol was obtained from the liquid fraction by xylose-utilizing S. cerevisiae following membrane nanofiltration to remove butanol.
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Affiliation(s)
- Hiroshi Teramura
- Graduate School of Science, Technology and Innovation, Kobe University, 1-1 Rokkodaicho, Nada-ku, Kobe, Hyogo 657-8501, Japan
| | - Kengo Sasaki
- Graduate School of Science, Technology and Innovation, Kobe University, 1-1 Rokkodaicho, Nada-ku, Kobe, Hyogo 657-8501, Japan
| | - Tomoko Oshima
- Graduate School of Science, Technology and Innovation, Kobe University, 1-1 Rokkodaicho, Nada-ku, Kobe, Hyogo 657-8501, Japan
| | - Hideo Kawaguchi
- Graduate School of Science, Technology and Innovation, Kobe University, 1-1 Rokkodaicho, Nada-ku, Kobe, Hyogo 657-8501, Japan
| | - Chiaki Ogino
- Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, 1-1 Rokkodaicho, Nada-ku, Kobe, Hyogo 657-8501, Japan
| | - Takashi Sazuka
- Bioscience and Biotechnology Center, Nagoya University, Furocho, Chikusa-ku, Nagoya, Aichi 464-8601, Japan
| | - Akihiko Kondo
- Graduate School of Science, Technology and Innovation, Kobe University, 1-1 Rokkodaicho, Nada-ku, Kobe, Hyogo 657-8501, Japan; Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, 1-1 Rokkodaicho, Nada-ku, Kobe, Hyogo 657-8501, Japan.
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Kikuchi J, Ito K, Date Y. Environmental metabolomics with data science for investigating ecosystem homeostasis. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2018; 104:56-88. [PMID: 29405981 DOI: 10.1016/j.pnmrs.2017.11.003] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2017] [Revised: 11/19/2017] [Accepted: 11/19/2017] [Indexed: 05/08/2023]
Abstract
A natural ecosystem can be viewed as the interconnections between complex metabolic reactions and environments. Humans, a part of these ecosystems, and their activities strongly affect the environments. To account for human effects within ecosystems, understanding what benefits humans receive by facilitating the maintenance of environmental homeostasis is important. This review describes recent applications of several NMR approaches to the evaluation of environmental homeostasis by metabolic profiling and data science. The basic NMR strategy used to evaluate homeostasis using big data collection is similar to that used in human health studies. Sophisticated metabolomic approaches (metabolic profiling) are widely reported in the literature. Further challenges include the analysis of complex macromolecular structures, and of the compositions and interactions of plant biomass, soil humic substances, and aqueous particulate organic matter. To support the study of these topics, we also discuss sample preparation techniques and solid-state NMR approaches. Because NMR approaches can produce a number of data with high reproducibility and inter-institution compatibility, further analysis of such data using machine learning approaches is often worthwhile. We also describe methods for data pretreatment in solid-state NMR and for environmental feature extraction from heterogeneously-measured spectroscopic data by machine learning approaches.
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Affiliation(s)
- Jun Kikuchi
- RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan; Graduate School of Medical Life Science, Yokohama City University, 1-7-29 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan; Graduate School of Bioagricultural Sciences, Nagoya University, 1 Furo-cho, Chikusa-ku, Nagoya, Aichi 464-0810, Japan.
| | - Kengo Ito
- RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan; Graduate School of Medical Life Science, Yokohama City University, 1-7-29 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
| | - Yasuhiro Date
- RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan; Graduate School of Medical Life Science, Yokohama City University, 1-7-29 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
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Teramura H, Sasaki K, Kawaguchi H, Matsuda F, Kikuchi J, Shirai T, Sazuka T, Yamasaki M, Takumi S, Ogino C, Kondo A. Differences in glucose yield of residues from among varieties of rice, wheat, and sorghum after dilute acid pretreatment. Biosci Biotechnol Biochem 2017. [PMID: 28622080 DOI: 10.1080/09168451.2017.1336922] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
Bio-refinery processes require use of the most suitable lignocellulosic biomass for enzymatic saccharification and microbial fermentation. Glucose yield from biomass solid fractions obtained after dilute sulfuric acid (1%) pretreatment (at 180 °C) was investigated using 14, 8, and 16 varieties of rice, wheat, and sorghum, respectively. Biomass solid fractions of each crop showed similar cellulose content. However, glucose yield after enzymatic hydrolysis (cellulase loading at 6.6 filter paper unit/g-biomass) was different among the varieties of each crop, indicating genotypic differences for rice, wheat, and sorghum. Nuclear magnetic resonance method revealed that the high residual level of lignin aromatic regions decreased glucose yield from solid fraction of sorghum.
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Affiliation(s)
- Hiroshi Teramura
- a Graduate School of Science, Technology and Innovation, Kobe University , Kobe , Japan
| | - Kengo Sasaki
- a Graduate School of Science, Technology and Innovation, Kobe University , Kobe , Japan
| | - Hideo Kawaguchi
- a Graduate School of Science, Technology and Innovation, Kobe University , Kobe , Japan
| | - Fumio Matsuda
- b Department of Bioinformatic Engineering, Graduate School of Information Science and Technology , Osaka University , Suita , Japan
| | - Jun Kikuchi
- c RIKEN Center for Sustainable Resource Science , Yokohama , Japan.,d Graduate School of Medical Life Science, Yokohama City University , Yokohama , Japan.,e Graduate School of Bioagricultural Sciences and School of Agricultural Sciences, Nagoya University , Nagoya , Japan
| | - Tomokazu Shirai
- c RIKEN Center for Sustainable Resource Science , Yokohama , Japan
| | - Takashi Sazuka
- f Bioscience and Biotechnology Center , Nagoya University , Nagoya , Japan
| | - Masanori Yamasaki
- g Food Resources Education and Research Center, Graduate School of Agricultural Science , Kobe University , Kasai , Japan
| | - Shigeo Takumi
- h Laboratory of Plant Genetics , Graduate School of Agricultural Science, Kobe University , Kobe , Japan
| | - Chiaki Ogino
- i Department of Chemical Science and Engineering , Graduate School of Engineering, Kobe University , Kobe , Japan
| | - Akihiko Kondo
- a Graduate School of Science, Technology and Innovation, Kobe University , Kobe , Japan.,c RIKEN Center for Sustainable Resource Science , Yokohama , Japan.,i Department of Chemical Science and Engineering , Graduate School of Engineering, Kobe University , Kobe , Japan
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Mostofian B, Cai CM, Smith MD, Petridis L, Cheng X, Wyman CE, Smith JC. Local Phase Separation of Co-solvents Enhances Pretreatment of Biomass for Bioenergy Applications. J Am Chem Soc 2016; 138:10869-78. [DOI: 10.1021/jacs.6b03285] [Citation(s) in RCA: 73] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Barmak Mostofian
- UT/ORNL
Center for Molecular Biophysics, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
- Joint
Institute for Biological Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
- BioEnergy
Science Center, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
| | - Charles M. Cai
- BioEnergy
Science Center, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
- Center
for Environmental Research and Technology (CE-CERT), Bourns College
of Engineering, University of California, Riverside, California 92507, United States
- Department
of Chemical and Environmental Engineering, Bourns College of Engineering, University of California, Riverside, California 92521, United States
| | - Micholas Dean Smith
- UT/ORNL
Center for Molecular Biophysics, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
- BioEnergy
Science Center, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
- Department of Biochemistry, Cellular & Molecular Biology, The University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Loukas Petridis
- UT/ORNL
Center for Molecular Biophysics, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
- BioEnergy
Science Center, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
- Department of Biochemistry, Cellular & Molecular Biology, The University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Xiaolin Cheng
- UT/ORNL
Center for Molecular Biophysics, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
- BioEnergy
Science Center, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
- Department of Biochemistry, Cellular & Molecular Biology, The University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Charles E. Wyman
- BioEnergy
Science Center, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
- Center
for Environmental Research and Technology (CE-CERT), Bourns College
of Engineering, University of California, Riverside, California 92507, United States
- Department
of Chemical and Environmental Engineering, Bourns College of Engineering, University of California, Riverside, California 92521, United States
| | - Jeremy C. Smith
- UT/ORNL
Center for Molecular Biophysics, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
- BioEnergy
Science Center, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
- Department of Biochemistry, Cellular & Molecular Biology, The University of Tennessee, Knoxville, Tennessee 37996, United States
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Goda T, Teramura H, Suehiro M, Kanamaru K, Kawaguchi H, Ogino C, Kondo A, Yamasaki M. Natural variation in the glucose content of dilute sulfuric acid–pretreated rice straw liquid hydrolysates: implications for bioethanol production. Biosci Biotechnol Biochem 2016; 80:863-9. [DOI: 10.1080/09168451.2015.1136882] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
Abstract
Rice straw is a promising resource for bioethanol production. Because the glucose content of pretreatment liquid hydrolysates is highly correlated with ethanol yield, the selection of appropriate rice cultivars is essential. The glucose content in liquid hydrolysates of pretreated rice straws of 208 diverse cultivars was evaluated in natural field in 2013 and 2014 using a novel high-throughput system. The glucose content of the rice straw samples varied across cultivars and was affected by environmental factors such as temperature and solar radiation. Several high-quality cultivars exhibiting high glucose content in both years were identified. The results of this study can aid in development of novel rice cultivars suitable as both feedstocks for bioethanol production and cooking.
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Affiliation(s)
- Takashi Goda
- Food Resources Education and Research Center, Graduate School of Agricultural Science, Kobe University, Kasai, Japan
| | - Hiroshi Teramura
- Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe, Japan
| | - Miki Suehiro
- Food Resources Education and Research Center, Graduate School of Agricultural Science, Kobe University, Kasai, Japan
| | - Kengo Kanamaru
- Graduate School of Agricultural Science, Kobe University, Kobe, Japan
| | - Hideo Kawaguchi
- Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe, Japan
| | - Chiaki Ogino
- Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe, Japan
| | - Akihiko Kondo
- Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe, Japan
- RIKEN Biomass Engineering Program, Yokohama, Japan
| | - Masanori Yamasaki
- Food Resources Education and Research Center, Graduate School of Agricultural Science, Kobe University, Kasai, Japan
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16
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Teramura H, Sasaki K, Oshima T, Matsuda F, Okamoto M, Shirai T, Kawaguchi H, Ogino C, Hirano K, Sazuka T, Kitano H, Kikuchi J, Kondo A. Organosolv pretreatment of sorghum bagasse using a low concentration of hydrophobic solvents such as 1-butanol or 1-pentanol. BIOTECHNOLOGY FOR BIOFUELS 2016; 9:27. [PMID: 26839590 PMCID: PMC4736640 DOI: 10.1186/s13068-016-0427-z] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2015] [Accepted: 01/05/2016] [Indexed: 05/24/2023]
Abstract
BACKGROUND The primary components of lignocellulosic biomass such as sorghum bagasse are cellulose, hemicellulose, and lignin. Each component can be utilized as a sustainable resource for producing biofuels and bio-based products. However, due to their complicated structures, fractionation of lignocellulosic biomass components is required. Organosolv pretreatment is an attractive method for this purpose. However, as organosolv pretreatment uses high concentrations of organic solvents (>50 %), decreasing the concentration necessary for fractionation would help reduce processing costs. In this study, we sought to identify organic solvents capable of efficiently fractionating sorghum bagasse components at low concentrations. RESULTS Five alcohols (ethanol, 1-propanol, 2-propanol, 1-butanol, and 1-pentanol) were used for organosolv pretreatment of sorghum bagasse at a concentration of 12.5 %. Sulfuric acid (1 %) was used as a catalyst. With 1-butanol and 1-pentanol, three fractions (black liquor, liquid fraction containing xylose, and cellulose-enriched solid fraction) were obtained after pretreatment. Two-dimensional nuclear magnetic resonance analysis revealed that the lignin aromatic components of raw sorghum bagasse were concentrated in the black liquor fraction, although the major lignin side-chain (β-O-4 linkage) was lost. Pretreatment with 1-butanol or 1-pentanol effectively removed p-coumarate, some guaiacyl, and syringyl. Compared with using no solvent, pretreatment with 1-butanol or 1-pentanol resulted in two-fold greater ethanol production from the solid fraction by Saccharomyces cerevisiae. CONCLUSIONS Our results revealed that a low concentration (12.5 %) of a highly hydrophobic solvent such as 1-butanol or 1-pentanol can be used to separate the black liquor from the solid and liquid fractions. The efficient delignification and visible separation of the lignin-rich fraction possible with this method simplify the fractionation of sorghum bagasse.
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Affiliation(s)
- Hiroshi Teramura
- />Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, 1-1 Rokkodaicho, Nada-ku, Hyogo Kobe, 657-8501 Japan
| | - Kengo Sasaki
- />Organization of Advanced Science and Technology, Kobe University, 1-1 Rokkodaicho, Nada-ku, Hyogo Kobe, 657-8501 Japan
| | - Tomoko Oshima
- />Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, 1-1 Rokkodaicho, Nada-ku, Hyogo Kobe, 657-8501 Japan
| | - Fumio Matsuda
- />Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, 1-5 Yamadaoka, Osaka Suita, 565-0871 Japan
- />RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Kanagawa Yokohama, 230-0045 Japan
| | - Mami Okamoto
- />RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Kanagawa Yokohama, 230-0045 Japan
| | - Tomokazu Shirai
- />RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Kanagawa Yokohama, 230-0045 Japan
| | - Hideo Kawaguchi
- />Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, 1-1 Rokkodaicho, Nada-ku, Hyogo Kobe, 657-8501 Japan
| | - Chiaki Ogino
- />Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, 1-1 Rokkodaicho, Nada-ku, Hyogo Kobe, 657-8501 Japan
| | - Ko Hirano
- />Bioscience and Biotechnology Center, Nagoya University, 1 Furo-cho, Chikusa-ku, Nagoya, 464-8601 Japan
| | - Takashi Sazuka
- />Bioscience and Biotechnology Center, Nagoya University, 1 Furo-cho, Chikusa-ku, Nagoya, 464-8601 Japan
| | - Hidemi Kitano
- />Bioscience and Biotechnology Center, Nagoya University, 1 Furo-cho, Chikusa-ku, Nagoya, 464-8601 Japan
| | - Jun Kikuchi
- />RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Kanagawa Yokohama, 230-0045 Japan
- />Graduate School of Medical Life Science, Yokohama City University, 1-7-29 Suehirocho, Tsurumi-ku, Yokohama, 230-0045 Japan
- />Graduate School of Bioagricultural Sciences and School of Agricultural Sciences, Nagoya University, 1 Furo-cho, Chikusa-ku, Nagoya, 464-8601 Japan
| | - Akihiko Kondo
- />Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, 1-1 Rokkodaicho, Nada-ku, Hyogo Kobe, 657-8501 Japan
- />RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Kanagawa Yokohama, 230-0045 Japan
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