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Premate E, Kepic T, Fišer C. Is the relationship between body length and body mass consistent across habitats? A case study on Niphargus (Crustacea: Amphipoda). ZOOLOGY 2023; 161:126120. [PMID: 37696118 DOI: 10.1016/j.zool.2023.126120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2022] [Revised: 08/30/2023] [Accepted: 09/07/2023] [Indexed: 09/13/2023]
Abstract
Body size is one of the main characteristics of any organism and influences various aspects of individual's biology. In animal ecology, it represents a key functional trait that can be quantified using different measures and is often used as a proxy for different organismal functions. The way we quantify body size is critical in any study using this measure alone or to scale other organismal traits. It is especially important in groups that act as model systems across different fields of biological research. One of such groups are amphipods, which are at focus in many ecological studies where appropriate quantification of body size is needed. Here, we explored the relationship between body length and body mass in the largest freshwater amphipod genus Niphargus, and evaluated whether the two measures lead to different conclusions in a putative ecological study of species coexistence. We selected 16 species inhabiting two different subterranean habitats, cave lakes and cave streams. The relationship between log-transformed body mass and body length was linear in all species, but body mass increased steeper among species from cave lakes than from cave streams, reflecting the stouter body shape of the former. In the simulated ecological study, the comparisons of the two measures showed that they may yield different results: in 10 % of cases, body length detected differences between species when body mass did not and vice versa (13 %). Usage of body length or body mass can thus lead to different conclusions. We recommend avoiding direct transformations between body length and body mass in ecological studies. Whenever needed, such transformations should be done with caution using habitat-specific body mass - body length ratios.
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Affiliation(s)
- Ester Premate
- University of Ljubljana, Biotechnical Faculty, Department of Biology, SubBio Lab, Jamnikarjeva 101, SI-1000 Ljubljana, Slovenia.
| | - Tinkara Kepic
- University of Ljubljana, Biotechnical Faculty, Department of Biology, SubBio Lab, Jamnikarjeva 101, SI-1000 Ljubljana, Slovenia
| | - Cene Fišer
- University of Ljubljana, Biotechnical Faculty, Department of Biology, SubBio Lab, Jamnikarjeva 101, SI-1000 Ljubljana, Slovenia
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2
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Jourdan J, Bundschuh M, Copilaș-Ciocianu D, Fišer C, Grabowski M, Hupało K, Jemec Kokalj A, Kabus J, Römbke J, Soose LJ, Oehlmann J. Cryptic Species in Ecotoxicology. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2023; 42:1889-1914. [PMID: 37314101 DOI: 10.1002/etc.5696] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Revised: 03/20/2023] [Accepted: 06/12/2023] [Indexed: 06/15/2023]
Abstract
The advent of genetic methods has led to the discovery of an increasing number of species that previously could not be distinguished from each other on the basis of morphological characteristics. Even though there has been an exponential growth of publications on cryptic species, such species are rarely considered in ecotoxicology. Thus, the particular question of ecological differentiation and the sensitivity of closely related cryptic species is rarely addressed. Tackling this question, however, is of key importance for evolutionary ecology, conservation biology, and, in particular, regulatory ecotoxicology. At the same time, the use of species with (known or unknown) cryptic diversity might be a reason for the lack of reproducibility of ecotoxicological experiments and implies a false extrapolation of the findings. Our critical review includes a database and literature search through which we investigated how many of the species most frequently used in ecotoxicological assessments show evidence of cryptic diversity. We found a high proportion of reports indicating overlooked species diversity, especially in invertebrates. In terrestrial and aquatic realms, at least 67% and 54% of commonly used species, respectively, were identified as cryptic species complexes. The issue is less prominent in vertebrates, in which we found evidence for cryptic species complexes in 27% of aquatic and 6.7% of terrestrial vertebrates. We further exemplified why different evolutionary histories may significantly determine cryptic species' ecology and sensitivity to pollutants. This in turn may have a major impact on the results of ecotoxicological tests and, consequently, the outcome of environmental risk assessments. Finally, we provide a brief guideline on how to deal practically with cryptic diversity in ecotoxicological studies in general and its implementation in risk assessment procedures in particular. Environ Toxicol Chem 2023;42:1889-1914. © 2023 The Authors. Environmental Toxicology and Chemistry published by Wiley Periodicals LLC on behalf of SETAC.
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Affiliation(s)
- Jonas Jourdan
- Department of Aquatic Ecotoxicology, Goethe University, Frankfurt am Main, Germany
| | - Mirco Bundschuh
- iES Landau, Institute for Environmental Sciences, University of Kaiserslautern-Landau, Landau, Germany
- Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Denis Copilaș-Ciocianu
- Laboratory of Evolutionary Ecology of Hydrobionts, Nature Research Centre, Vilnius, Lithuania
| | - Cene Fišer
- Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia
| | - Michał Grabowski
- Invertebrate Zoology and Hydrobiology, University of Lodz, Łódź, Poland
| | - Kamil Hupało
- Department of Aquatic Ecosystem Research, Faculty of Biology, University of Duisburg-Essen, Essen, Germany
| | - Anita Jemec Kokalj
- Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia
| | - Jana Kabus
- Department of Aquatic Ecotoxicology, Goethe University, Frankfurt am Main, Germany
| | - Jörg Römbke
- ECT Oekotoxikologie, Flörsheim am Main, Germany
| | - Laura J Soose
- Department of Aquatic Ecotoxicology, Goethe University, Frankfurt am Main, Germany
| | - Jörg Oehlmann
- Department of Aquatic Ecotoxicology, Goethe University, Frankfurt am Main, Germany
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3
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Kabus J, Cunze S, Dombrowski A, Karaouzas I, Shumka S, Jourdan J. Uncovering the Grinnellian niche space of the cryptic species complex Gammarus roeselii. PeerJ 2023; 11:e15800. [PMID: 37551343 PMCID: PMC10404395 DOI: 10.7717/peerj.15800] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2023] [Accepted: 07/05/2023] [Indexed: 08/09/2023] Open
Abstract
BACKGROUND The discovery of cryptic species complexes within morphologically established species comes with challenges in the classification and handling of these species. We hardly know to what extent species within a species complex differ ecologically. Such knowledge is essential to assess the vulnerability of individual genetic lineages in the face of global change. The abiotic conditions, i.e., the Grinnellian niche that a genetic lineage colonizes, provides insights into how diverse the ecological requirements of each evolutionary lineage are within a species complex. MATERIAL AND METHODS We sampled the cryptic species complex of the amphipod Gammarus roeselii from Central Germany to Greece and identified genetic lineages based on cytochrome c oxidase subunit I (COI) barcoding. At the same time, we recorded various abiotic parameters and local pollution parameters using a series of in vitro assays to then characterize the Grinnellian niches of the morphospecies (i.e., Gammarus roeselii sensu lato) as well as each genetic lineage. Local pollution can be a significant factor explaining current and future distributions in times of increasing production and release of chemicals into surface waters. RESULTS We identified five spatially structured genetic lineages in our dataset that differed to varying degrees in their Grinnellian niche. In some cases, the niches were very similar despite the geographical separation of lineages, supporting the hypothesis of niche conservatism while being allopatrically separated. In other cases, we found a small niche that was clearly different from those of other genetic lineages. CONCLUSION The variable niches and overlaps of different dimensions make the G. roeselii species complex a promising model system to further study ecological, phenotypic and functional differentiation within this species complex. In general, our results show that the Grinnellian niches of genetically distinct molecular operational taxonomic units (MOTUs) within a cryptic species complex can differ significantly between each other, calling for closer inspection of cryptic species in a conservational and biodiversity context.
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Affiliation(s)
- Jana Kabus
- Department Aquatic Ecotoxicology, Johann Wolfgang Goethe Universität Frankfurt am Main, Frankfurt am Main, Germany
| | - Sarah Cunze
- Department of Integrative Parasitology and Zoophysiology, Johann Wolfgang Goethe Universität Frankfurt am Main, Frankfurt am Main, Germany
| | - Andrea Dombrowski
- Department Aquatic Ecotoxicology, Johann Wolfgang Goethe Universität Frankfurt am Main, Frankfurt am Main, Germany
| | - Ioannis Karaouzas
- Institute of Marine Biological Resources and Inland Waters, Hellenic Centre for Marine Research, Anavyssos, Greece
| | - Spase Shumka
- Faculty of Biotechnology and Food, Agricultural University of Tirana, Tirana, Albania
| | - Jonas Jourdan
- Department Aquatic Ecotoxicology, Johann Wolfgang Goethe Universität Frankfurt am Main, Frankfurt am Main, Germany
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4
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Borko Š, Altermatt F, Zagmajster M, Fišer C. A hotspot of groundwater amphipod diversity on a crossroad of evolutionary radiations. DIVERS DISTRIB 2022. [DOI: 10.1111/ddi.13500] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Affiliation(s)
- Špela Borko
- SubBio Lab Department of Biology Biotechnical Faculty University of Ljubljana Ljubljana Slovenia
| | - Florian Altermatt
- Department of Aquatic Ecology EawagSwiss Federal Institute of Aquatic Science and Technology Dübendorf Switzerland
- Department of Evolutionary Biology and Environmental Studies University of Zurich Zürich Switzerland
| | - Maja Zagmajster
- SubBio Lab Department of Biology Biotechnical Faculty University of Ljubljana Ljubljana Slovenia
| | - Cene Fišer
- SubBio Lab Department of Biology Biotechnical Faculty University of Ljubljana Ljubljana Slovenia
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5
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Premate E, Borko Š, Kralj-Fišer S, Jennions M, Fišer Ž, Balázs G, Bíró A, Bračko G, Copilaş-Ciocianu D, Hrga N, Herczeg G, Rexhepi B, Zagmajster M, Zakšek V, Fromhage L, Fišer C. No room for males in caves: Female-biased sex ratio in subterranean amphipods of the genus Niphargus. J Evol Biol 2021; 34:1653-1661. [PMID: 34424594 DOI: 10.1111/jeb.13917] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Revised: 08/12/2021] [Accepted: 08/19/2021] [Indexed: 12/16/2022]
Abstract
Sex allocation theory predicts that the proportion of daughters to sons will evolve in response to ecological conditions that determine the costs and benefits of producing each sex. All else being equal, the adult sex ratio (ASR) should also vary with ecological conditions. Many studies of subterranean species reported female-biased ASR, but no systematic study has yet been conducted. We test the hypothesis that the ASR becomes more female-biased with increased isolation from the surface. We compiled a data set of ASRs of 35 species in the subterranean amphipod Niphargus, each living in one of three distinct habitats (surface-subterranean boundary, cave streams, phreatic lakes) representing an environmental gradient of increased isolation underground. The ASR was female-biased in 27 of 35 species; the bias was statistically significant in 12 species. We found a significant difference in the ASR among habitats after correction for phylogeny. It is most weakly female-biased at the surface-subterranean boundary and most strongly female-biased in phreatic lakes. Additional modelling suggests that the ASR has evolved towards a single value for both surface-subterranean boundary and cave stream-dwelling species, and another value for 9 of 11 phreatic lake dwellers. We suggest that a history of inbreeding in subterranean populations might lower inbreeding depression such that kin selection favours mating with siblings. This could select for a female-biased offspring sex ratio due to local mate competition among brothers. The observed patterns in sex ratios in subterranean species make them a group worthy of more attention from those interested in sex allocation theory.
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Affiliation(s)
- Ester Premate
- SubBio Lab, Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia
| | - Špela Borko
- SubBio Lab, Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia
| | - Simona Kralj-Fišer
- Research Centre of the Slovenian Academy of Sciences and Arts, Jovan Hadži Institute of Biology, Ljubljana, Slovenia
| | - Michael Jennions
- Division of Ecology & Evolution, Research School of Biology, The Australian National University, Canberra, ACT, Australia
| | - Žiga Fišer
- SubBio Lab, Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia
| | - Gergely Balázs
- Behavioural Ecology Group, Department of Systematic Zoology and Ecology, Institute of Biology, ELTE Eötvös Loránd University, Budapest, Hungary
| | - Anna Bíró
- Behavioural Ecology Group, Department of Systematic Zoology and Ecology, Institute of Biology, ELTE Eötvös Loránd University, Budapest, Hungary
| | - Gregor Bračko
- SubBio Lab, Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia
| | - Denis Copilaş-Ciocianu
- Laboratory of Evolutionary Ecology of Hydrobionts, Nature Research Centre, Vilnius, Lithuania
| | - Nuša Hrga
- SubBio Lab, Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia
| | - Gábor Herczeg
- Behavioural Ecology Group, Department of Systematic Zoology and Ecology, Institute of Biology, ELTE Eötvös Loránd University, Budapest, Hungary
| | - Behare Rexhepi
- SubBio Lab, Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia
| | - Maja Zagmajster
- SubBio Lab, Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia
| | - Valerija Zakšek
- SubBio Lab, Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia
| | - Lutz Fromhage
- Department of Biological and Environmental Science, University of Jyvaskyla, Finland
| | - Cene Fišer
- SubBio Lab, Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia
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Linking Hydrogeology and Ecology in Karst Landscapes: The Response of Epigean and Obligate Groundwater Copepods (Crustacea: Copepoda). WATER 2021. [DOI: 10.3390/w13152106] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Groundwater invertebrate communities in karst landscapes are known to vary in response to multiple environmental factors. This study aims to explore the invertebrate assemblages’ composition of an Apennine karst system in Italy mainly described by the Rio Gamberale surface stream and the Stiffe Cave. The stream sinks into the carbonate rock and predominantly feeds the saturated karst into the cave. For a minor portion, groundwater flows from the epikarst and the perched aquifer within it. The spatial distribution of the species belonging to the selected target group of the Crustacea Copepoda between the surface stream and the groundwater habitats inside the cave highlighted a different response of surface-water species and obligate groundwater dwellers to the hydrogeological traits of the karst unit. Our results suggest that fast endorheic infiltration routes promoted the drift of epigean species from the surface to groundwater via the sinking stream while most of the obligate groundwater dwellers come from the perched aquifer in the epikarst from diffuse infiltration pathways.
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7
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Hancock ZB, Lehmberg ES, Bradburd GS. Neo-darwinism still haunts evolutionary theory: A modern perspective on Charlesworth, Lande, and Slatkin (1982). Evolution 2021; 75:1244-1255. [PMID: 33999415 DOI: 10.1111/evo.14268] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Revised: 05/14/2021] [Accepted: 05/14/2021] [Indexed: 12/31/2022]
Abstract
The Modern Synthesis (or "Neo-Darwinism"), which arose out of the reconciliation of Darwin's theory of natural selection and Mendel's research on genetics, remains the foundation of evolutionary theory. However, since its inception, it has been a lightning rod for criticism, which has ranged from minor quibbles to complete dismissal. Among the most famous of the critics was Stephen Jay Gould, who, in 1980, proclaimed that the Modern Synthesis was "effectively dead." Gould and others claimed that the action of natural selection on random mutations was insufficient on its own to explain patterns of macroevolutionary diversity and divergence, and that new processes were required to explain findings from the fossil record. In 1982, Charlesworth, Lande, and Slatkin published a response to this critique in Evolution, in which they argued that Neo-Darwinism was indeed sufficient to explain macroevolutionary patterns. In this Perspective for the 75th Anniversary of the Society for the Study of Evolution, we review Charlesworth et al. in its historical context and provide modern support for their arguments. We emphasize the importance of microevolutionary processes in the study of macroevolutionary patterns. Ultimately, we conclude that punctuated equilibrium did not represent a major revolution in evolutionary biology - although debate on this point stimulated significant research and furthered the field - and that Neo-Darwinism is alive and well.
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Affiliation(s)
- Zachary B Hancock
- Ecology, Evolution, and Behavior Program, Michigan State University, East Lansing, Michigan.,Department of Integrative Biology, Michigan State University, East Lansing, Michigan
| | - Emma S Lehmberg
- Department of Biology, Texas A&M University, College Station, Texas.,Ecology and Evolutionary Biology Interdisciplinary Program, Texas A&M University, College Station, Texas
| | - Gideon S Bradburd
- Ecology, Evolution, and Behavior Program, Michigan State University, East Lansing, Michigan.,Department of Integrative Biology, Michigan State University, East Lansing, Michigan
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8
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Raffard A, Cucherousset J, Montoya JM, Richard M, Acoca-Pidolle S, Poésy C, Garreau A, Santoul F, Blanchet S. Intraspecific diversity loss in a predator species alters prey community structure and ecosystem functions. PLoS Biol 2021; 19:e3001145. [PMID: 33705375 PMCID: PMC7987174 DOI: 10.1371/journal.pbio.3001145] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Revised: 03/23/2021] [Accepted: 02/15/2021] [Indexed: 01/09/2023] Open
Abstract
Loss in intraspecific diversity can alter ecosystem functions, but the underlying mechanisms are still elusive, and intraspecific biodiversity-ecosystem function (iBEF) relationships have been restrained to primary producers. Here, we manipulated genetic and functional richness of a fish consumer (Phoxinus phoxinus) to test whether iBEF relationships exist in consumer species and whether they are more likely sustained by genetic or functional richness. We found that both genotypic and functional richness affected ecosystem functioning, either independently or interactively. Loss in genotypic richness reduced benthic invertebrate diversity consistently across functional richness treatments, whereas it reduced zooplankton diversity only when functional richness was high. Finally, losses in genotypic and functional richness altered functions (decomposition) through trophic cascades. We concluded that iBEF relationships lead to substantial top-down effects on entire food chains. The loss of genotypic richness impacted ecological properties as much as the loss of functional richness, probably because it sustains "cryptic" functional diversity.
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Affiliation(s)
- Allan Raffard
- CNRS, Université Toulouse III Paul Sabatier, Station d’Écologie Théorique et Expérimentale du CNRS à Moulis, UMR-5321, Moulis, France
- EcoLab, Université de Toulouse, CNRS, INPT, UPS, Toulouse, France
| | - Julien Cucherousset
- CNRS, Université Toulouse III Paul Sabatier, UMR-5174 EDB (Laboratoire Evolution & Diversité Biologique), Toulouse, France
| | - José M. Montoya
- CNRS, Université Toulouse III Paul Sabatier, Station d’Écologie Théorique et Expérimentale du CNRS à Moulis, UMR-5321, Moulis, France
| | - Murielle Richard
- CNRS, Université Toulouse III Paul Sabatier, Station d’Écologie Théorique et Expérimentale du CNRS à Moulis, UMR-5321, Moulis, France
| | - Samson Acoca-Pidolle
- CNRS, Université Toulouse III Paul Sabatier, Station d’Écologie Théorique et Expérimentale du CNRS à Moulis, UMR-5321, Moulis, France
| | - Camille Poésy
- CNRS, Université Toulouse III Paul Sabatier, Station d’Écologie Théorique et Expérimentale du CNRS à Moulis, UMR-5321, Moulis, France
| | - Alexandre Garreau
- CNRS, Université Toulouse III Paul Sabatier, Station d’Écologie Théorique et Expérimentale du CNRS à Moulis, UMR-5321, Moulis, France
| | - Frédéric Santoul
- EcoLab, Université de Toulouse, CNRS, INPT, UPS, Toulouse, France
| | - Simon Blanchet
- CNRS, Université Toulouse III Paul Sabatier, Station d’Écologie Théorique et Expérimentale du CNRS à Moulis, UMR-5321, Moulis, France
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9
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Wattier R, Mamos T, Copilaş-Ciocianu D, Jelić M, Ollivier A, Chaumot A, Danger M, Felten V, Piscart C, Žganec K, Rewicz T, Wysocka A, Rigaud T, Grabowski M. Continental-scale patterns of hyper-cryptic diversity within the freshwater model taxon Gammarus fossarum (Crustacea, Amphipoda). Sci Rep 2020; 10:16536. [PMID: 33024224 PMCID: PMC7538970 DOI: 10.1038/s41598-020-73739-0] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Accepted: 09/16/2020] [Indexed: 12/11/2022] Open
Abstract
Traditional morphological diagnoses of taxonomic status remain widely used while an increasing number of studies show that one morphospecies might hide cryptic diversity, i.e. lineages with unexpectedly high molecular divergence. This hidden diversity can reach even tens of lineages, i.e. hyper cryptic diversity. Even well-studied model-organisms may exhibit overlooked cryptic diversity. Such is the case of the freshwater crustacean amphipod model taxon Gammarus fossarum. It is extensively used in both applied and basic types of research, including biodiversity assessments, ecotoxicology and evolutionary ecology. Based on COI barcodes of 4926 individuals from 498 sampling sites in 19 European countries, the present paper shows (1) hyper cryptic diversity, ranging from 84 to 152 Molecular Operational Taxonomic Units, (2) ancient diversification starting already 26 Mya in the Oligocene, and (3) high level of lineage syntopy. Even if hyper cryptic diversity was already documented in G. fossarum, the present study increases its extent fourfold, providing a first continental-scale insight into its geographical distribution and establishes several diversification hotspots, notably south-eastern and central Europe. The challenges of recording hyper cryptic diversity in the future are also discussed.
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Affiliation(s)
- Remi Wattier
- UMR CNRS 6282 Biogéosciences, Université Bourgogne Franche Comté, Dijon, France.
| | - Tomasz Mamos
- Department of Invertebrate Zoology and Hydrobiology, University of Lodz, Lodz, Poland.,Zoological Institute, University of Basel, Basel, Switzerland
| | - Denis Copilaş-Ciocianu
- Institute of Ecology, Nature Research Centre, Vilnius Nature Research Centre, Institute of Ecology, Vilnius, Lithuania
| | - Mišel Jelić
- Department of Natural Sciences, Varaždin City Museum, Varaždin, Croatia
| | - Anthony Ollivier
- UMR CNRS 6282 Biogéosciences, Université Bourgogne Franche Comté, Dijon, France
| | - Arnaud Chaumot
- Laboratoire d'écotoxicologie, INRAE, UR RiverLy, Villeurbanne, France
| | - Michael Danger
- UMR CNRS 73602 LIEC, Université de Lorraine, Metz, France
| | - Vincent Felten
- UMR CNRS 73602 LIEC, Université de Lorraine, Metz, France
| | | | - Krešimir Žganec
- Department of Teacher Education Studies in Gospić, University of Zadar, Gospić, Croatia
| | - Tomasz Rewicz
- Department of Invertebrate Zoology and Hydrobiology, University of Lodz, Lodz, Poland.,University of Guelph, Centre for Biodiversity Genomics, Guelph, ON, Canada
| | - Anna Wysocka
- Department of Genetics and Biosystematics, University of Gdansk, Gdansk, Poland
| | - Thierry Rigaud
- UMR CNRS 6282 Biogéosciences, Université Bourgogne Franche Comté, Dijon, France
| | - Michał Grabowski
- Department of Invertebrate Zoology and Hydrobiology, University of Lodz, Lodz, Poland.
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10
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Reinaldo R, Albuquerque U, Medeiros P. Taxonomic affiliation influences the selection of medicinal plants among people from semi-arid and humid regions-a proposition for the evaluation of utilitarian equivalence in Northeast Brazil. PeerJ 2020; 8:e9664. [PMID: 32832277 PMCID: PMC7413083 DOI: 10.7717/peerj.9664] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Accepted: 07/15/2020] [Indexed: 01/23/2023] Open
Abstract
Background This study sought to investigate the occurrence of taxonomic patterns between semi-arid and humid regions, verifying how the taxonomic affiliation can influence the selection of plants for medicinal purposes and act as a selection criterion. Methods The relationship between the taxonomic affiliation and the selection of medicinal plants with four different communities was analyzed; two of them associated with a seasonally dry tropical forest and the other two associated with a tropical rain forest. We used the Utilitarian Equivalence Model (transposing the concept of ecological equivalence, proposed by Odum, for ethnobotany) to test the hypothesis that species that have the same taxonomic affiliation tend to have the same therapeutic applications in different environments (utilitarian equivalence). In addition, we used the Utilitarian Redundancy Model to verify whether, within the same medical system, plants of the same taxonomic affiliation tend to be redundant (treating the same diseases). Results We found that a pair of plants of the same genus were 9.25 times more likely to be equivalent than a different genus pair (OR = 9.25, CI [1.68-51.02], p < 0.05). When we analyzed the species used by the same population, the chances of a pair having similar therapeutic uses (utilitarian redundancy) increased when they were species of the same family (OR = 1.94, CI [1.06-3.53]; p < 0.05). Conclusions These findings confirm the hypothesis that there is an influence of taxonomic affiliation, in terms of genera and family, on the selection of medicinal plants in semi-arid and humid areas in Northeast Brazil. In addition, our Utilitarian Equivalence Model can be an important tool in the search for more common selection criteria, in order to identify the shared characteristics among the equivalent pairs and consequently the main types of perceptions or stimuli that led to the inclusion of such species in local pharmacopoeias.
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Affiliation(s)
- Rafael Reinaldo
- Departamento de Biologia, Universidade Federal Rural de Pernambuco, Recife, Pernambuco, Brazil
| | - Ulysses Albuquerque
- Centro de Biociências, Universidade Federal de Pernambuco, Recife, Pernambuco, Brazil
| | - Patrícia Medeiros
- Campus de Engenharias e Ciencias Agrárias, Universidade Federal de Alagoas, Rio Largo, Alagoas, Brazil
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11
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Abstract
Abstract
North Atlantic lepechinellid amphipod species were investigated using morphological and molecular techniques based on material collected during two IceAGE expeditions in 2011 and 2013 (Icelandic marine Animals: Genetics and Ecology). The presence of eyes is reported for the first time for the family Lepechinellidae. Four lepechinellid species, Lepechinella grimi, L. helgii, L. skarphedini and Lepechinelloides karii were distinct across morphological, COI and 16S data. Lepechinella arctica, L. norvegica and L. victoriae were seen to be morphologically similar. No morphological or molecular separation was observed between L. arctica and L. norvegica, indicating that these taxa should not be considered separate species. Full illustrations of habitus and mouthparts are presented for L. arctica and a new synonymy is provided recognizing L. norvegica as a junior synonym of L. arctica. While L. victoriae shows little morphological variation from L. arctica, COI and 16S data show this taxon as genetically distinct. Furthermore, new geographic and depth ranges for North Atlantic and Arctic lephechinellids are provided.
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12
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Species coexistence through competition and rapid evolution. Proc Natl Acad Sci U S A 2019; 116:2407-2409. [PMID: 30692267 DOI: 10.1073/pnas.1822091116] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
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13
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Abstract
Biodiversity in natural systems can be maintained either because niche differentiation among competitors facilitates stable coexistence or because equal fitness among neutral species allows for their long-term cooccurrence despite a slow drift toward extinction. Whereas the relative importance of these two ecological mechanisms has been well-studied in the absence of evolution, the role of local adaptive evolution in maintaining biological diversity through these processes is less clear. Here we study the contribution of local adaptive evolution to coexistence in a landscape of interconnected patches subject to disturbance. Under these conditions, early colonists to empty patches may adapt to local conditions sufficiently fast to prevent successful colonization by other preadapted species. Over the long term, the iteration of these local-scale priority effects results in niche convergence of species at the regional scale even though species tend to monopolize local patches. Thus, the dynamics evolve from stable coexistence through niche differentiation to neutral cooccurrence at the landscape level while still maintaining strong local niche segregation. Our results show that neutrality can emerge at the regional scale from local, niche-based adaptive evolution, potentially resolving why ecologists often observe neutral distribution patterns at the landscape level despite strong niche divergence among local communities.
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14
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Yasser AG, Sheldon F, Hughes JM. Spatial distributions and environmental relationships of two species complexes of freshwater atyid shrimps. Ecosphere 2018. [DOI: 10.1002/ecs2.2388] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- A. Gh. Yasser
- Australian Rivers Institute; Griffith University; 170 Kessels Road Nathan Queensland 4111 Australia
| | - F. Sheldon
- Australian Rivers Institute; Griffith University; 170 Kessels Road Nathan Queensland 4111 Australia
| | - J. M. Hughes
- Australian Rivers Institute; Griffith University; 170 Kessels Road Nathan Queensland 4111 Australia
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15
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Tempestini A, Rysgaard S, Dufresne F. Species identification and connectivity of marine amphipods in Canada's three oceans. PLoS One 2018; 13:e0197174. [PMID: 29791459 PMCID: PMC5965885 DOI: 10.1371/journal.pone.0197174] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2017] [Accepted: 04/27/2018] [Indexed: 11/28/2022] Open
Abstract
Monitoring the distribution of marine biodiversity is a crucial step to better assess the impacts of global changes. Arctic marine fauna is dominated by amphipods in terms of abundance and biomass. These peracarids are an important marine order of crustaceans but the number of species found in the different Canadian oceans is currently unknown. Furthermore, most species are difficult to identify due to poor taxonomic descriptions and morphological convergence. The aim of this study was to assess the species diversity of marine amphipods in the three Canadian oceans using DNA barcoding. To do so, we produced a database of DNA barcodes of amphipods from the three Canadian Oceans publicly available from the BOLD website to which we added 310 new sequences from the Canadian Arctic Archipelago. We first delimited amphipod species based on barcode gap detection techniques and tree based method (bPTP) and then compared the composition of amphipods among the three oceans in order to assess the influence of past transarctic exchanges on Arctic diversity. Our analysis of 2309 sequences which represent more than 250 provisional species revealed a high connectivity between the Atlantic and Arctic Oceans. Our results also suggest that a single threshold to delimitate species is not suitable for amphipods. This study highlights the challenges involved in species delimitation and the need to obtain complete barcoding inventories in marine invertebrates.
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Affiliation(s)
- Astrid Tempestini
- Département de biologie et Québec Océan, Université du Québec à Rimouski, Rimouski, QC, Canada
- * E-mail:
| | - Søren Rysgaard
- University of Manitoba, Centre for Earth Observation Science, Winnipeg, MB, Canada
- Greenland Institute of Natural Resources, Nuuk, Greenland
- Aarhus University, Arctic Research Centre, Aarhus, Denmark
| | - France Dufresne
- Département de biologie et Centre d’étude Nordique, Université du Québec à Rimouski, Rimouski, QC, Canada
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16
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A biodiversity survey of scavenging amphipods in a proposed marine protected area: the Filchner area in the Weddell Sea, Antarctica. Polar Biol 2018. [DOI: 10.1007/s00300-018-2292-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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17
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Fišer C, Robinson CT, Malard F. Cryptic species as a window into the paradigm shift of the species concept. Mol Ecol 2018; 27:613-635. [DOI: 10.1111/mec.14486] [Citation(s) in RCA: 263] [Impact Index Per Article: 43.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2017] [Revised: 12/12/2017] [Accepted: 12/13/2017] [Indexed: 12/15/2022]
Affiliation(s)
- Cene Fišer
- SubBio Lab; Department of Biology; Biotechnical Faculty; University of Ljubljana; Ljubljana Slovenia
| | - Christopher T. Robinson
- Department of Aquatic Ecology; Eawag; Dübendorf Switzerland
- Institute of Integrative Biology; ETH Zürich; Zürich Switzerland
| | - Florian Malard
- Université Lyon; Université Claude Bernard Lyon 1; CNRS; ENTPE; UMR5023 LEHNA Villeurbanne France
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Is subterranean lifestyle reversible? Independent and recent large-scale dispersal into surface waters by two species of the groundwater amphipod genus Niphargus. Mol Phylogenet Evol 2018; 119:37-49. [DOI: 10.1016/j.ympev.2017.10.023] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2017] [Revised: 10/23/2017] [Accepted: 10/27/2017] [Indexed: 12/18/2022]
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19
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Mammola S, Arnedo MA, Pantini P, Piano E, Chiappetta N, Isaia M. Ecological speciation in darkness? Spatial niche partitioning in sibling subterranean spiders (Araneae : Linyphiidae : Troglohyphantes). INVERTEBR SYST 2018. [DOI: 10.1071/is17090] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Speciation in subterranean habitats is commonly explained as the result of divergent selection in geographically isolated populations; conversely, the contribution of niche partitioning in driving subterranean species diversification has been rarely quantified. The present study integrated molecular and morphological data with a hypervolume analysis based on functional traits to investigate a potential case of parapatric speciation by means of niche differentiation in two sibling spiders inhabiting contiguous subterranean habitats within a small alpine hypogean site. Troglohyphantes giachinoi, sp. nov. and T. bornensis are diagnosed by small details of the genitalia, which are likely to be involved in a reproductive barrier. Molecular analysis recovered the two species as sister, and revealed a deep genetic divergence that may trace back to the Messinian (~6 million years ago). The hypervolume analysis highlighted a marginal overlap in their ecological niches, coupled with morphological character displacement. Specifically, T. giachinoi, sp. nov. exhibits morphological traits suitable for thriving in the smaller pores of the superficial network of underground fissures (Milieu Souterrain Superficiel, MSS), whereas T. bornensis shows a greater adaptation to the deep subterranean habitat. Our results suggest that different selective regimes within the subterranean environment, i.e. deep caves v. MSS, may either drive local speciation or facilitate contiguous distributions of independently subterranean adapted species.
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20
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Delić T, Trontelj P, Rendoš M, Fišer C. The importance of naming cryptic species and the conservation of endemic subterranean amphipods. Sci Rep 2017; 7:3391. [PMID: 28611400 PMCID: PMC5469755 DOI: 10.1038/s41598-017-02938-z] [Citation(s) in RCA: 98] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2016] [Accepted: 04/20/2017] [Indexed: 11/15/2022] Open
Abstract
Molecular taxonomy often uncovers cryptic species, reminding us that taxonomic incompleteness is even more severe than previous thought. The importance of cryptic species for conservation is poorly understood. Although some cryptic species may be seriously threatened or otherwise important, they are rarely included in conservation programs as most of them remain undescribed. We analysed the importance of cryptic species in conservation by scrutinizing the South European cryptic complex of the subterranean amphipod Niphargus stygius sensu lato. Using uni- and multilocus delineation methods we show that it consists of 15 parapatric and sympatric species, which we describe using molecular diagnoses. The new species are not mere “taxonomic inflation” as they originate from several distinct branches within the genus and coexist with no evidence of lineage sharing. They are as evolutionarily distinct as average nominal species of the same genus. Ignoring these cryptic species will underestimate the number of subterranean endemics in Slovenia by 12 and in Croatia by four species, although alpha diversity of single caves remains unchanged. The new taxonomy renders national Red Lists largely obsolete, as they list mostly large-ranged species but omit critically endangered single-site endemics. Formal naming of cryptic species is critical for them to be included in conservation policies and faunal listings.
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Affiliation(s)
- Teo Delić
- SubBio lab, Department of Biology, Biotechnical Faculty, University of Ljubljana, Večna pot 111, Ljubljana, 1000, Slovenia
| | - Peter Trontelj
- SubBio lab, Department of Biology, Biotechnical Faculty, University of Ljubljana, Večna pot 111, Ljubljana, 1000, Slovenia
| | - Michal Rendoš
- State Nature Conservancy, Slovak Caves Administration, Hodžova 11, 031 01, Liptovský, Mikuláš, Slovakia
| | - Cene Fišer
- SubBio lab, Department of Biology, Biotechnical Faculty, University of Ljubljana, Večna pot 111, Ljubljana, 1000, Slovenia.
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Copilaș-Ciocianu D, Fišer C, Borza P, Balázs G, Angyal D, Petrusek A. Low intraspecific genetic divergence and weak niche differentiation despite wide ranges and extensive sympatry in two epigean Niphargus species (Crustacea: Amphipoda). Zool J Linn Soc 2017. [DOI: 10.1093/zoolinnean/zlw031] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
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22
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Copilaş-Ciocianu D, Rutová T, Pařil P, Petrusek A. Epigean gammarids survived millions of years of severe climatic fluctuations in high latitude refugia throughout the Western Carpathians. Mol Phylogenet Evol 2017; 112:218-229. [PMID: 28478197 DOI: 10.1016/j.ympev.2017.04.027] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2016] [Revised: 02/17/2017] [Accepted: 04/28/2017] [Indexed: 10/19/2022]
Abstract
Isolated glacial refugia have been documented in Central Europe for a number of taxa, but conclusive evidence for epigean aquatic species has remained elusive. Using molecular data (mitochondrial and nuclear markers), we compared the spatial patterns of lineage diversity of the widely distributed Gammarus fossarum species complex between two adjacent biogeographically and geomorphologically distinct Central European regions: the Bohemian Massif and the Western Carpathians. We investigated if the observed patterns of spatial diversity are more likely to stem from historical or present-day factors. Phylogenetic and phylogeographic analyses revealed eight phylogenetically diverse lineages: two exhibiting local signatures of recent demographic expansion inhabit both regions, while the other six display a relict distributional pattern and are found only in the Western Carpathians. Molecular dating indicates that these lineages are old and probably diverged throughout the Miocene (7-18Ma). Furthermore, their distribution does not seem to be constrained by the present boundaries of river catchments or topography. The contrasting spatial patterns of diversity observed between the two regions thus more likely result from historical rather than contemporaneous or recent factors. Our results indicate that despite the high latitude and proximity to the Pleistocene ice sheets, the Western Carpathians functioned as long-term glacial refugia for permanent freshwater fauna, allowing the uninterrupted survival of ancient lineages through millions of years of drastic climatic fluctuations.
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Affiliation(s)
- Denis Copilaş-Ciocianu
- Charles University, Faculty of Science, Department of Ecology, Viničná 7, 12844 Prague, Czech Republic.
| | - Tereza Rutová
- Charles University, Faculty of Science, Department of Ecology, Viničná 7, 12844 Prague, Czech Republic
| | - Petr Pařil
- Masaryk University, Faculty of Science, Department of Botany and Zoology, Kotlářská 2, 611 37 Brno, Czech Republic
| | - Adam Petrusek
- Charles University, Faculty of Science, Department of Ecology, Viničná 7, 12844 Prague, Czech Republic
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23
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Koenders A, Schön I, Halse S, Martens K. Valve shape is not linked to genetic species in theEucypris virens(Ostracoda, Crustacea) species complex. Zool J Linn Soc 2016. [DOI: 10.1111/zoj.12488] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Annette Koenders
- Centre for Ecosystem Management; Edith Cowan University; 270 Joondalup Dv Joondalup WA 6027 Australia
| | - Isa Schön
- Royal Belgian Institute of Natural Sciences, OD Nature; Freshwater Biology; Vautierstraat 29 B-1000 Brussels Belgium
- Research Group Zoology; University of Hasselt; Agoralaan Building D B-3590 Diepenbeek Belgium
| | - Stuart Halse
- Bennelongia Environmental Consultants; 5 Bishop Street Jolimont WA 6014 Australia
| | - Koen Martens
- Royal Belgian Institute of Natural Sciences, OD Nature; Freshwater Biology; Vautierstraat 29 B-1000 Brussels Belgium
- Department of Biology; University of Ghent; K.L. Ledeganckstraat 35 B-9000 Gent Belgium
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24
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Alther R, Fišer C, Altermatt F. Description of a widely distributed but overlooked amphipod species in the European Alps. Zool J Linn Soc 2016. [DOI: 10.1111/zoj.12477] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Roman Alther
- Department of Aquatic Ecology; Eawag, Swiss Federal Institute of Aquatic Science and Technology; CH-8600 Dübendorf Switzerland
- Department of Evolutionary Biology and Environmental Studies; University of Zurich; CH-8057 Zürich Switzerland
| | - Cene Fišer
- Department of Biology; Biotechnical Faculty; University of Ljubljana; SI-1001 Ljubljana Slovenia
| | - Florian Altermatt
- Department of Aquatic Ecology; Eawag, Swiss Federal Institute of Aquatic Science and Technology; CH-8600 Dübendorf Switzerland
- Department of Evolutionary Biology and Environmental Studies; University of Zurich; CH-8057 Zürich Switzerland
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25
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Cryptic diversity and ecosystem functioning: a complex tale of differential effects on decomposition. Oecologia 2016; 182:559-71. [DOI: 10.1007/s00442-016-3677-3] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2015] [Accepted: 06/11/2016] [Indexed: 10/21/2022]
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26
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Eisenring M, Altermatt F, Westram AM, Jokela J. Habitat requirements and ecological niche of two cryptic amphipod species at landscape and local scales. Ecosphere 2016. [DOI: 10.1002/ecs2.1319] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Affiliation(s)
- Michael Eisenring
- Department of Aquatic Ecology Swiss Federal Institute of Aquatic Science and Technology Eawag Überlandstrasse 133 CH‐8600 Dubendorf Switzerland
| | - Florian Altermatt
- Department of Aquatic Ecology Swiss Federal Institute of Aquatic Science and Technology Eawag Überlandstrasse 133 CH‐8600 Dubendorf Switzerland
- Department of Evolutionary Biology and Environmental Studies University of Zurich Winterthurerstrasse 190 CH‐8057 Zurich Switzerland
| | - Anja Marie Westram
- University of Sheffield, Animal and Plant Sciences Western Bank Sheffield S102TN UK
| | - Jukka Jokela
- Department of Aquatic Ecology Swiss Federal Institute of Aquatic Science and Technology Eawag Überlandstrasse 133 CH‐8600 Dubendorf Switzerland
- Department of Environmental Systems Science Institute of Integrative Biology ETH Zurich Universitätstrasse 16 8092 Zurich Switzerland
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27
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Delić T, Trontelj P, Zakšek V, Fišer C. Biotic and abiotic determinants of appendage length evolution in a cave amphipod. J Zool (1987) 2016. [DOI: 10.1111/jzo.12318] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- T. Delić
- Department of Biology; Biotechnical Faculty; University of Ljubljana; Ljubljana Slovenia
| | - P. Trontelj
- Department of Biology; Biotechnical Faculty; University of Ljubljana; Ljubljana Slovenia
- Museum für Naturkunde; Leibniz-Institut für Evolutions- und Biodiversitätsforschung an der Humboldt-Universität zu Berlin; Berlin Germany
| | - V. Zakšek
- Department of Biology; Biotechnical Faculty; University of Ljubljana; Ljubljana Slovenia
| | - C. Fišer
- Department of Biology; Biotechnical Faculty; University of Ljubljana; Ljubljana Slovenia
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