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Nabila DS, Chan R, Syamsuri RRP, Nurlilasari P, Wan-Mohtar WAAQI, Ozturk AB, Rossiana N, Doni F. Biobutanol production from underutilized substrates using Clostridium: Unlocking untapped potential for sustainable energy development. CURRENT RESEARCH IN MICROBIAL SCIENCES 2024; 7:100250. [PMID: 38974669 PMCID: PMC11225672 DOI: 10.1016/j.crmicr.2024.100250] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/09/2024] Open
Abstract
The increasing demand for sustainable energy has brought biobutanol as a potential substitute for fossil fuels. The Clostridium genus is deemed essential for biobutanol synthesis due to its capability to utilize various substrates. However, challenges in maintaining fermentation continuity and achieving commercialization persist due to existing barriers, including butanol toxicity to Clostridium, low substrate utilization rates, and high production costs. Proper substrate selection significantly impacts fermentation efficiency, final product quality, and economic feasibility in Clostridium biobutanol production. This review examines underutilized substrates for biobutanol production by Clostridium, which offer opportunities for environmental sustainability and a green economy. Extensive research on Clostridium, focusing on strain development and genetic engineering, is essential to enhance biobutanol production. Additionally, critical suggestions for optimizing substrate selection to enhance Clostridium biobutanol production efficiency are also provided in this review. In the future, cost reduction and advancements in biotechnology may make biobutanol a viable alternative to fossil fuels.
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Affiliation(s)
- Devina Syifa Nabila
- Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Jatinangor, West Java 45363, Indonesia
| | - Rosamond Chan
- Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Jatinangor, West Java 45363, Indonesia
| | | | - Puspita Nurlilasari
- Department of Agro-industrial Technology, Faculty of Agro-industrial Technology, Universitas Padjadjaran, Jatinangor, West Java 45363, Indonesia
| | - Wan Abd Al Qadr Imad Wan-Mohtar
- Functional Omics and Bioprocess Development Laboratory, Institute of Biological Sciences, Faculty of Science, Universiti Malaya, Kuala Lumpur 50603, Malaysia
| | - Abdullah Bilal Ozturk
- Department of Chemical Engineering, Faculty of Chemical and Metallurgical Engineering, Yildiz Technical University, Esenler, Istanbul 34220, Türkiye
| | - Nia Rossiana
- Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Jatinangor, West Java 45363, Indonesia
| | - Febri Doni
- Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Jatinangor, West Java 45363, Indonesia
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2
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Wang Y, Zhang Y, Cui Q, Feng Y, Xuan J. Composition of Lignocellulose Hydrolysate in Different Biorefinery Strategies: Nutrients and Inhibitors. Molecules 2024; 29:2275. [PMID: 38792135 PMCID: PMC11123716 DOI: 10.3390/molecules29102275] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Revised: 05/06/2024] [Accepted: 05/09/2024] [Indexed: 05/26/2024] Open
Abstract
The hydrolysis and biotransformation of lignocellulose, i.e., biorefinery, can provide human beings with biofuels, bio-based chemicals, and materials, and is an important technology to solve the fossil energy crisis and promote global sustainable development. Biorefinery involves steps such as pretreatment, saccharification, and fermentation, and researchers have developed a variety of biorefinery strategies to optimize the process and reduce process costs in recent years. Lignocellulosic hydrolysates are platforms that connect the saccharification process and downstream fermentation. The hydrolysate composition is closely related to biomass raw materials, the pretreatment process, and the choice of biorefining strategies, and provides not only nutrients but also possible inhibitors for downstream fermentation. In this review, we summarized the effects of each stage of lignocellulosic biorefinery on nutrients and possible inhibitors, analyzed the huge differences in nutrient retention and inhibitor generation among various biorefinery strategies, and emphasized that all steps in lignocellulose biorefinery need to be considered comprehensively to achieve maximum nutrient retention and optimal control of inhibitors at low cost, to provide a reference for the development of biomass energy and chemicals.
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Affiliation(s)
- Yilan Wang
- Department of Bioscience and Bioengineering, School of Chemistry and Biological Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Beijing 100083, China
- CAS Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Synthetic Biology, Shandong Engineering Laboratory of Single Cell Oil, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, 189 Songling Road, Qingdao 266101, China
| | - Yuedong Zhang
- CAS Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Synthetic Biology, Shandong Engineering Laboratory of Single Cell Oil, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, 189 Songling Road, Qingdao 266101, China
- Shandong Energy Institute, 189 Songling Road, Qingdao 266101, China
- Qingdao New Energy Shandong Laboratory, 189 Songling Road, Qingdao 266101, China
| | - Qiu Cui
- CAS Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Synthetic Biology, Shandong Engineering Laboratory of Single Cell Oil, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, 189 Songling Road, Qingdao 266101, China
- State Key Laboratory of Microbial Technology, Shandong University, Qingdao 266237, China
| | - Yingang Feng
- CAS Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Synthetic Biology, Shandong Engineering Laboratory of Single Cell Oil, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, 189 Songling Road, Qingdao 266101, China
- Shandong Energy Institute, 189 Songling Road, Qingdao 266101, China
- Qingdao New Energy Shandong Laboratory, 189 Songling Road, Qingdao 266101, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jinsong Xuan
- Department of Bioscience and Bioengineering, School of Chemistry and Biological Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Beijing 100083, China
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3
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Chalhoub E, Nassar N, Hawly M, Belovich JM. Mathematical modeling of ABE fermentation on glucose substrate with Zn supplementation for enhanced butanol production. Arch Biochem Biophys 2023; 747:109765. [PMID: 37757907 DOI: 10.1016/j.abb.2023.109765] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Revised: 08/31/2023] [Accepted: 09/21/2023] [Indexed: 09/29/2023]
Abstract
Supplementation or limitation of some micronutrients during acetone-butanol-ethanol (ABE) fermentation has led to improvement in butanol yield and productivity. A mechanistic model of ABE fermentation offers insights in understanding these complex interactions and improving productivity through optimal culture conditions. This study proposes a mechanistic kinetic model of ABE fermentation by two Clostridium Acetobutylicum strains, L7 and ATCC 824 using glucose as sole carbon source without zinc and with various zinc doses. The model incorporates enzyme regulation by zinc on several glycolytic, acidogenesis and solventogenesis enzymes. The model was fitted and validated to experimental data collected from the published literature. The simulated results were in compliance with the experimental data, most importantly indicating higher glucose consumption and butanol productivity when supplemented with zinc compared to the control culture. The average squared correlation factor (R2) between the experimental and the simulated results, without and with zinc, were 0.99 and 0.96 for glucose, and 0.89 and 0.95 for butanol, respectively. A sensitivity analysis performed on the fitted and validated model indicated that the glucose consumption and growth parameters most influenced the model outputs. The developed model can be used as a template for modeling ABE fermentation under different combinations of micronutrients that may offer improved butanol yield and productivity.
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Affiliation(s)
- Elie Chalhoub
- Petroleum Engineering Program, School of Engineering, Lebanese American University, Byblos Campus, Lebanon.
| | - Nathalie Nassar
- Department of Chemical Engineering, University of Balamand, Tripoli, Lebanon
| | - Mhamad Hawly
- Department of Chemical Engineering, University of Balamand, Tripoli, Lebanon
| | - Joanne M Belovich
- Department of Chemical and Biomedical Engineering, Cleveland State University, Cleveland, OH, 44115, USA
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Alberto García Mogollón C, Carlos Quintero Díaz J, Omar Gil Posada J. Production of acetone, butanol, and ethanol by electro-fermentation with Clostridium saccharoperbutylacetonicum N1-4. Bioelectrochemistry 2023; 152:108414. [PMID: 36940584 DOI: 10.1016/j.bioelechem.2023.108414] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2022] [Revised: 03/09/2023] [Accepted: 03/10/2023] [Indexed: 03/17/2023]
Abstract
This manuscript describes the effect of altering the extracellular redox potential during the production of acetone, butanol, and ethanol on a dual chamber H-type microbial fuel cell by fermenting glucose with Clostridium saccharoperbutylacetonicum N1-4. Extracellular redox potential modification was achieved by either supplementing the microbial broth with the redox agent NADH or by poising the cathode potential at -600 mV vs. Ag/AgCl. The addition of NADH was found to foment the production of acetone via fermentation of glucose. The addition of 200 mM of NADH to the catholyte rendered the highest production of acetone (2.4 g L-1), thus outperforming the production of acetone by conventional fermentation means (control treatment) by a factor of 2.2. The experimental evidence gathered here, indicates that cathodic electro-fermentation of glucose favors the production of butanol. When poising the cathode potential at -600 mV vs Ag/AgCl (electro-fermentation), the largest production of butanol was achieved (5.8 g L-1), outperforming the control treatment by a factor of 1.5. The production of ABE solvents and the electrochemical measurements demonstrate the electroactive properties of C. saccharoperbutylacetonicum N1-4 and illustrates the usefulness of bio-electrochemical systems to improve conventional fermentative processes.
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Affiliation(s)
| | - Juan Carlos Quintero Díaz
- Grupo de Bioprocesos, Departamento de Ingeniería Química, Universidad de Antioquia, Medellín, Colombia
| | - Jorge Omar Gil Posada
- Grupo de Bioprocesos, Departamento de Ingeniería Química, Universidad de Antioquia, Medellín, Colombia.
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Brindha K, Mohanraj S, Rajaguru P, Pugalenthi V. Simultaneous production of renewable biohydrogen, biobutanol and biopolymer from phytogenic CoNPs-assisted Clostridial fermentation for sustainable energy and environment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 859:160002. [PMID: 36356773 DOI: 10.1016/j.scitotenv.2022.160002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Revised: 11/01/2022] [Accepted: 11/03/2022] [Indexed: 06/16/2023]
Abstract
Considering the environmental impacts, rapid fossil fuel depletion and production costs, sustainable production of clean biofuels from alternative sources is required to meet the increasing demand for energy while avoiding environmental pollution. In this study, phytogenic cobalt nanoparticles (CoNPs)-assisted dark fermentation process was developed for the simultaneous production of biohydrogen, biobutanol and biopolymer from glucose using Clostridium acetobutylicum NCIM 2337. The maximum biohydrogen yield of 2.89 mol H2/mol glucose was achieved at 1.5 mg of CoNPs, which is 1.6 folds higher than that of the control experiment. The high level of soluble metabolites, specifically acetate and butyrate, confirmed the production of biohydrogen through acetate/butyrate pathways. The modified Gompertz model fitted well with experimental results of CoNPs-assisted biohydrogen production. The CoNPs could act as an electron carrier in intracellular metabolism to enhance the activity of ferredoxin and hydrogenase enzymes, thus improving biohydrogen production. Furthermore, biobutanol and biopolymer yields of 975 ± 2.5 mg/L and 1182 ± 1.4 mg/L were achieved, with 2.0 mg and 2.5 mg of CoNP, respectively, which were 1.27 and 1.19 folds higher than the control values. Hence, the inclusion of CoNPs in the fermentation medium seems to be a promising technique for the enhanced simultaneous production of biohydrogen, biobutanol and biopolymer. The environmental perspectives of the obtained renewable biohydrogen, biobutanol and biopolymer are also discussed.
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Affiliation(s)
- Kothaimanimaran Brindha
- Department of Biotechnology, University College of Engineering, Bharathidasan Institute of Technology Campus, Anna University, Tiruchirappalli 620 024, Tamil Nadu, India
| | - Sundaresan Mohanraj
- Department of Biochemistry, KMCH research foundation, Coimbatore 641014, Tamil Nadu, India
| | - Palanichamy Rajaguru
- Department of Biotechnology, Central University of Tamil Nadu, Tiruvarur 610005, India
| | - Velan Pugalenthi
- Department of Biotechnology, University College of Engineering, Bharathidasan Institute of Technology Campus, Anna University, Tiruchirappalli 620 024, Tamil Nadu, India.
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Mechanistic modeling of redox balance effects on the fermentation of eucalyptus wood-derived xylose to acetone-butanol-ethanol. Biochem Eng J 2022. [DOI: 10.1016/j.bej.2022.108738] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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7
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Acetone–Butanol–Ethanol Fermentation Phenomenological Models for Process Studies: Parameter Estimation and Multi-Response Model Reduction with Statistical Analysis. Processes (Basel) 2022. [DOI: 10.3390/pr10101978] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
A phenomenological multi-response multi-parameter Acetone–Butanol–Ethanol fermentation dynamic model is developed and calibrated for fermentation process studies. The model was constructed based on other models reported in the literature and was calibrated with a maximum likelihood parameter estimation over Acetone–Butanol–Ethanol fermentation experimental data from the literature. After parameter estimation, a rigorous statistical analysis was conducted to evaluate standard deviations of estimated parameters and predicted responses as well as their respective 95% probability confidence intervals for correct parameters and responses. The significance of parameters was assessed via a Fisher’s F test. From the Base-Model with 17 parameters, a tight, more compact, Reduced-Model was developed with 9 highly significant parameters after deleting 8 nonsignificant parameters from the Base-Model and re-estimating the remaining 9 parameters. This Reduced-Model showed good adherence to the experimental data and had better performance comparatively relative to the Base-Model with 17 parameters using two different inhibition functions reported in the literature. The Reduced-Model is sufficiently good for preliminary engineering and economic assessments of ABE fermentation processes.
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Guellout Z, Francois-Lopez E, Benguerba Y, Dumas C, Yadav KK, Fallatah AM, Pugazhendhi A, Ernst B. Dark fermentative biohydrogen production from vinicultural biomass without exogenous inoculum in a semi-batch reactor: A kinetic study. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 305:114393. [PMID: 34979359 DOI: 10.1016/j.jenvman.2021.114393] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Revised: 12/12/2021] [Accepted: 12/23/2021] [Indexed: 06/14/2023]
Abstract
This work employed a unique kind of vinicultural biomass (grape residues) to generate fermentative hydrogen. This form of biomass serves two purposes (contains substrate and inoculum). Four mathematical model methods were established; these models were used to represent the fluctuation of hydrogen generation and other fermentation products (organic acids, alcohols), the consumption of substrates included in biomass, and bacterial growth. One of these models was verified using experimental data and used to represent all of the metabolic pathways of bacteria contained in the medium and the interaction between products and substrates. The optimal biomass load, 60 g COD (Chemical Oxygen Demand)/L with a concentration of 0.22 mol of hexose and 0.0444 mol of tartrate offers the best hydrogen yield.
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Affiliation(s)
- Zineb Guellout
- Département de Génie des Procédés, Faculté de Technologie, Université Chahid Mostafa BENBOULAID Batna 2, Algeria; Université de Strasbourg, CNRS, IPHC UMR 7178, Laboratoire de Reconnaissance et Procédés de Séparation Moléculaire (RePSeM), ECPM 25 rue Becquerel, F-67000, Strasbourg, France
| | - Emilie Francois-Lopez
- Université de Strasbourg, CNRS, IPHC UMR 7178, Laboratoire de Reconnaissance et Procédés de Séparation Moléculaire (RePSeM), ECPM 25 rue Becquerel, F-67000, Strasbourg, France; French Environment and Energy Management Agency, Angers, France
| | - Yacine Benguerba
- Department of Process Engineering, Faculty of Technology, Ferhat Abbas Setif1 University, Setif, Algeria.
| | - Christine Dumas
- Université de Strasbourg, CNRS, IPHC UMR 7178, Laboratoire de Reconnaissance et Procédés de Séparation Moléculaire (RePSeM), ECPM 25 rue Becquerel, F-67000, Strasbourg, France
| | - Krishna Kumar Yadav
- Faculty of Science and Technology, Madhyanchal Professional University, Ratibad, Bhopal, 462044, India
| | - Ahmed M Fallatah
- Department of Chemistry College of Science, Taif University, PO Box 11099, Taif, 21944, Saudi Arabia
| | | | - Barbara Ernst
- Université de Strasbourg, CNRS, IPHC UMR 7178, Laboratoire de Reconnaissance et Procédés de Séparation Moléculaire (RePSeM), ECPM 25 rue Becquerel, F-67000, Strasbourg, France
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9
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Modeling fixed bed bioreactors for isopropanol and butanol production using Clostridium beijerinckii DSM 6423 immobilized on polyurethane foams. Biochem Eng J 2022. [DOI: 10.1016/j.bej.2022.108355] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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10
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ZHAO H, ZHENG Z, ZHANG M, WANG Y, ZHANG M, YANG Z. Fermentation optimization of rennet-producing Bacillus amyloliquefaciens GSBa-1 for high-density culture and its kinetic model. FOOD SCIENCE AND TECHNOLOGY 2022. [DOI: 10.1590/fst.40122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/03/2023]
Affiliation(s)
- Hua ZHAO
- Beijing Technology and Business University, P. R. China
| | - Zhe ZHENG
- Beijing Technology and Business University, P. R. China
| | - Man ZHANG
- Beijing Technology and Business University, P. R. China
| | - Yihui WANG
- Beijing Technology and Business University, P. R. China
| | - Min ZHANG
- Beijing Technology and Business University, P. R. China
| | - Zhennai YANG
- Beijing Technology and Business University, P. R. China
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11
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Rivas-Astroza M, Paredes I, Guerrero K, Mau S, Quintero J, Gentina JC, Conejeros R, Aroca G. Kinetic model of Clostridium beijerinckii's Acetone-Butanol-Ethanol fermentation considering metabolically diverse cell types. J Biotechnol 2021; 342:1-12. [PMID: 34648892 DOI: 10.1016/j.jbiotec.2021.09.021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2021] [Revised: 09/26/2021] [Accepted: 09/29/2021] [Indexed: 11/16/2022]
Abstract
Clostridium beijerinckii population branches into metabolically diverse cell types in batch cultures. Here, we present a new kinetic model of C. beijerinckii's Acetone-Butanol-Ethanol fermentation that considers three cell types: producers of acids (acidogenic), consumer of acids and producers of solvents (solventogenic), and spores cells. The model accurately recapitulates batch culture data. Also, the model estimates cell type-specific kinetic parameters, which can be helpful to improve the operation of the ABE fermentation and give a framework to study acidogenic and solventogenic metabolic pathways. To exemplify the latter, we used a constraint-based model to study how the ABE pathways are used among acidogenic and solventogenic cell types. We found that among both cell types, glycolytic production of ATP and consumption of NAD+ varies widely during the fermentation, with their maximum production/consumption rates happening when acidogenic and solventogenic growth rates were at their highest. However, acidogenic cells use the ABE pathway to contribute with an extra 12.5% of the total production of ATP, whereas solventogenic cell types use the ABE pathway to supply more than 75% of the demand for NAD+, alternating between the production of lactate and butyrate, being both coupled to the production of NAD+.
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Affiliation(s)
- Marcelo Rivas-Astroza
- Escuela de Ingeniería Bioquímica, Pontificia Universidad Católica de Valparaíso, Av. Brasil 2085, Valparaíso, Chile.
| | - Iván Paredes
- Escuela de Ingeniería Bioquímica, Pontificia Universidad Católica de Valparaíso, Av. Brasil 2085, Valparaíso, Chile
| | - Karlo Guerrero
- Escuela de Ingeniería Bioquímica, Pontificia Universidad Católica de Valparaíso, Av. Brasil 2085, Valparaíso, Chile
| | - Silvia Mau
- Escuela de Ingeniería Bioquímica, Pontificia Universidad Católica de Valparaíso, Av. Brasil 2085, Valparaíso, Chile
| | - Julián Quintero
- Escuela de Ingeniería Bioquímica, Pontificia Universidad Católica de Valparaíso, Av. Brasil 2085, Valparaíso, Chile
| | - Juan Carlos Gentina
- Escuela de Ingeniería Bioquímica, Pontificia Universidad Católica de Valparaíso, Av. Brasil 2085, Valparaíso, Chile
| | - Raúl Conejeros
- Escuela de Ingeniería Bioquímica, Pontificia Universidad Católica de Valparaíso, Av. Brasil 2085, Valparaíso, Chile
| | - Germán Aroca
- Escuela de Ingeniería Bioquímica, Pontificia Universidad Católica de Valparaíso, Av. Brasil 2085, Valparaíso, Chile
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12
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Arias DM, Ortíz-Sánchez E, Okoye PU, Rodríguez-Rangel H, Balbuena Ortega A, Longoria A, Domínguez-Espíndola R, Sebastian PJ. A review on cyanobacteria cultivation for carbohydrate-based biofuels: Cultivation aspects, polysaccharides accumulation strategies, and biofuels production scenarios. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 794:148636. [PMID: 34323759 DOI: 10.1016/j.scitotenv.2021.148636] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Revised: 06/03/2021] [Accepted: 06/19/2021] [Indexed: 06/13/2023]
Abstract
Cyanobacterial biomass has constituted a crucial third and fourth-generation biofuel material, with great potential to synthesize a wide range of metabolites, mainly carbohydrates. Lately, carbohydrate-based biofuels from cyanobacteria, such as bioethanol, biohydrogen, and biobutanol, have attracted attention as a sustainable alternative to petroleum-based products. Cyanobacteria can perform a simple process of saccharification, and extracted carbohydrates can be converted into biofuels with two alternatives; the first one consists of a fermentative process based on bacteria or yeasts, while the second alternative consists of an internal metabolic process of their own in intracellular carbohydrate content, either by the natural or genetic engineered process. This study reviewed carbohydrate-enriched cyanobacterial biomass as feedstock for biofuels. Detailed insights on technical strategies and limitations of cultivation, polysaccharide accumulation strategies for further fermentation process were provided. Advances and challenges in bioethanol, biohydrogen, and biobutanol production by cyanobacteria synthesis and an independent fermentative process are presented. Critical outlook on life-cycle assessment and techno-economical aspects for large-scale application of these technologies were discussed.
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Affiliation(s)
- Dulce María Arias
- Instituto de Energías Renovables-Universidad Nacional Autónoma de México, Priv. Xochicalco s/n, Col. Centro, Temixco, Morelos CP, 62580, Mexico
| | - Edwin Ortíz-Sánchez
- Universidad Politécnica del Estado de Morelos, Boulevard Cuauhnáhuac No. 566 Col. Lomas del Texcal, Jiutepec, Morelos CP, 62550, Mexico
| | - Patrick U Okoye
- Instituto de Energías Renovables-Universidad Nacional Autónoma de México, Priv. Xochicalco s/n, Col. Centro, Temixco, Morelos CP, 62580, Mexico.
| | - Hector Rodríguez-Rangel
- Division de Estudios de Posgrado e Investigación, Tecnológico Nacional de México Campus Culiacán, Juan de Dios Batiz 310 pte. Col Guadalupe, CP, 80220 Culiacàn, Mexico
| | - A Balbuena Ortega
- Instituto de Energías Renovables-Universidad Nacional Autónoma de México, Priv. Xochicalco s/n, Col. Centro, Temixco, Morelos CP, 62580, Mexico
| | - Adriana Longoria
- Instituto de Energías Renovables-Universidad Nacional Autónoma de México, Priv. Xochicalco s/n, Col. Centro, Temixco, Morelos CP, 62580, Mexico
| | - Ruth Domínguez-Espíndola
- Instituto de Energías Renovables-Universidad Nacional Autónoma de México, Priv. Xochicalco s/n, Col. Centro, Temixco, Morelos CP, 62580, Mexico
| | - P J Sebastian
- Instituto de Energías Renovables-Universidad Nacional Autónoma de México, Priv. Xochicalco s/n, Col. Centro, Temixco, Morelos CP, 62580, Mexico
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13
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Bai W, Ranaivoarisoa TO, Singh R, Rengasamy K, Bose A. n-Butanol production by Rhodopseudomonas palustris TIE-1. Commun Biol 2021; 4:1257. [PMID: 34732832 PMCID: PMC8566592 DOI: 10.1038/s42003-021-02781-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Accepted: 10/06/2021] [Indexed: 11/09/2022] Open
Abstract
Anthropogenic carbon dioxide (CO2) release in the atmosphere from fossil fuel combustion has inspired scientists to study CO2 to biofuel conversion. Oxygenic phototrophs such as cyanobacteria have been used to produce biofuels using CO2. However, oxygen generation during oxygenic photosynthesis adversely affects biofuel production efficiency. To produce n-butanol (biofuel) from CO2, here we introduce an n-butanol biosynthesis pathway into an anoxygenic (non-oxygen evolving) photoautotroph, Rhodopseudomonas palustris TIE-1 (TIE-1). Using different carbon, nitrogen, and electron sources, we achieve n-butanol production in wild-type TIE-1 and mutants lacking electron-consuming (nitrogen-fixing) or acetyl-CoA-consuming (polyhydroxybutyrate and glycogen synthesis) pathways. The mutant lacking the nitrogen-fixing pathway produce the highest n-butanol. Coupled with novel hybrid bioelectrochemical platforms, this mutant produces n-butanol using CO2, solar panel-generated electricity, and light with high electrical energy conversion efficiency. Overall, this approach showcases TIE-1 as an attractive microbial chassis for carbon-neutral n-butanol bioproduction using sustainable, renewable, and abundant resources.
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Affiliation(s)
- Wei Bai
- grid.4367.60000 0001 2355 7002Department of Energy, Environmental and Chemical Engineering, Washington University in St. Louis, St. Louis, MO USA
| | - Tahina Onina Ranaivoarisoa
- grid.4367.60000 0001 2355 7002Department of Biology, Washington University in St. Louis, St. Louis, MO USA
| | - Rajesh Singh
- grid.4367.60000 0001 2355 7002Department of Biology, Washington University in St. Louis, St. Louis, MO USA
| | - Karthikeyan Rengasamy
- grid.4367.60000 0001 2355 7002Department of Biology, Washington University in St. Louis, St. Louis, MO USA
| | - Arpita Bose
- grid.4367.60000 0001 2355 7002Department of Biology, Washington University in St. Louis, St. Louis, MO USA
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Schalck T, den Bergh BV, Michiels J. Increasing Solvent Tolerance to Improve Microbial Production of Alcohols, Terpenoids and Aromatics. Microorganisms 2021; 9:249. [PMID: 33530454 PMCID: PMC7912173 DOI: 10.3390/microorganisms9020249] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2020] [Revised: 01/14/2021] [Accepted: 01/20/2021] [Indexed: 12/16/2022] Open
Abstract
Fuels and polymer precursors are widely used in daily life and in many industrial processes. Although these compounds are mainly derived from petrol, bacteria and yeast can produce them in an environment-friendly way. However, these molecules exhibit toxic solvent properties and reduce cell viability of the microbial producer which inevitably impedes high product titers. Hence, studying how product accumulation affects microbes and understanding how microbial adaptive responses counteract these harmful defects helps to maximize yields. Here, we specifically focus on the mode of toxicity of industry-relevant alcohols, terpenoids and aromatics and the associated stress-response mechanisms, encountered in several relevant bacterial and yeast producers. In practice, integrating heterologous defense mechanisms, overexpressing native stress responses or triggering multiple protection pathways by modifying the transcription machinery or small RNAs (sRNAs) are suitable strategies to improve solvent tolerance. Therefore, tolerance engineering, in combination with metabolic pathway optimization, shows high potential in developing superior microbial producers.
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Affiliation(s)
- Thomas Schalck
- VIB Center for Microbiology, Flanders Institute for Biotechnology, B-3001 Leuven, Belgium; (T.S.); (B.V.d.B.)
- Centre of Microbial and Plant Genetics, KU Leuven, Kasteelpark Arenberg 20, B-3001 Leuven, Belgium
| | - Bram Van den Bergh
- VIB Center for Microbiology, Flanders Institute for Biotechnology, B-3001 Leuven, Belgium; (T.S.); (B.V.d.B.)
- Centre of Microbial and Plant Genetics, KU Leuven, Kasteelpark Arenberg 20, B-3001 Leuven, Belgium
| | - Jan Michiels
- VIB Center for Microbiology, Flanders Institute for Biotechnology, B-3001 Leuven, Belgium; (T.S.); (B.V.d.B.)
- Centre of Microbial and Plant Genetics, KU Leuven, Kasteelpark Arenberg 20, B-3001 Leuven, Belgium
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15
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Jenol MA, Ibrahim MF, Kamal Bahrin E, Abd-Aziz S. Enhanced volatile fatty acid production from sago hampas by Clostridium beijerinckii SR1 for bioelectricity generation using microbial fuel cells. Bioprocess Biosyst Eng 2020; 43:2027-2038. [PMID: 32572569 DOI: 10.1007/s00449-020-02391-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2020] [Accepted: 06/13/2020] [Indexed: 12/23/2022]
Abstract
Sago hampas is a starch-based biomass from sago processing industries consisted of 58% remaining starch. This study has demonstrated the bioconversion of sago hampas to volatile fatty acids (VFAs) by Clostridium beijerinckii SR1 via anaerobic digestion. Higher total VFAs were obtained from sago hampas (5.04 g/L and 0.287 g/g) as compared to commercial starch (5.94 g/L and 0.318 g/g). The physical factors have been investigated for the enhancement of VFAs production using one-factor-at-a-time (OFAT). The optimum condition; 3% substrate concentration, 3 g/L of yeast extract concentration and 2 g/L of ammonium nitrate enhanced the production of VFAs by 52.6%, resulted the total VFAs produced is 7.69 g/L with the VFAs yield of 0.451 g/g. VFAs hydrolysate produced successfully generated 273.4 mV of open voltage circuit and 61.5 mW/m2 of power density in microbial fuel cells. It was suggested that sago hampas provide as an alternative carbon feedstock for bioelectricity generation.
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Affiliation(s)
- Mohd Azwan Jenol
- Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
| | - Mohamad Faizal Ibrahim
- Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
| | - Ezyana Kamal Bahrin
- Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
| | - Suraini Abd-Aziz
- Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.
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16
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Nosrati‐Ghods N, Harrison STL, Isafiade AJ, Leng Tai S. Mathematical Modelling of Bioethanol Fermentation From Glucose, Xylose or Their Combination – A Review. CHEMBIOENG REVIEWS 2020. [DOI: 10.1002/cben.201900024] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Nosaibeh Nosrati‐Ghods
- University of Cape TownDepartment of Chemical Engineering, Faculty of Engineering and the Built Environment Private Bag X3 7701 Rondebosch South Africa
| | - Susan T. L. Harrison
- University of Cape TownDepartment of Chemical Engineering, Faculty of Engineering and the Built Environment Private Bag X3 7701 Rondebosch South Africa
| | - Adeniyi J. Isafiade
- University of Cape TownDepartment of Chemical Engineering, Faculty of Engineering and the Built Environment Private Bag X3 7701 Rondebosch South Africa
| | - Siew Leng Tai
- University of Cape TownDepartment of Chemical Engineering, Faculty of Engineering and the Built Environment Private Bag X3 7701 Rondebosch South Africa
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17
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Ferreira S, Pereira R, Wahl SA, Rocha I. Metabolic engineering strategies for butanol production in Escherichia coli. Biotechnol Bioeng 2020; 117:2571-2587. [PMID: 32374413 DOI: 10.1002/bit.27377] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2019] [Revised: 04/03/2020] [Accepted: 05/04/2020] [Indexed: 11/06/2022]
Abstract
The global market of butanol is increasing due to its growing applications as solvent, flavoring agent, and chemical precursor of several other compounds. Recently, the superior properties of n-butanol as a biofuel over ethanol have stimulated even more interest. (Bio)butanol is natively produced together with ethanol and acetone by Clostridium species through acetone-butanol-ethanol fermentation, at noncompetitive, low titers compared to petrochemical production. Different butanol production pathways have been expressed in Escherichia coli, a more accessible host compared to Clostridium species, to improve butanol titers and rates. The bioproduction of butanol is here reviewed from a historical and theoretical perspective. All tested rational metabolic engineering strategies in E. coli to increase butanol titers are reviewed: manipulation of central carbon metabolism, elimination of competing pathways, cofactor balancing, development of new pathways, expression of homologous enzymes, consumption of different substrates, and molecular biology strategies. The progress in the field of metabolic modeling and pathway generation algorithms and their potential application to butanol production are also summarized here. The main goals are to gather all the strategies, evaluate the respective progress obtained, identify, and exploit the outstanding challenges.
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Affiliation(s)
- Sofia Ferreira
- CEB-Centre of Biological Engineering, University of Minho, Campus de Gualtar, Braga, Portugal.,Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB-NOVA), Oeiras, Portugal
| | - Rui Pereira
- SilicoLife Lda, Braga, Portugal.,Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden
| | - S A Wahl
- Department of Biotechnology, Delft University of Technology, Delft, The Netherlands
| | - Isabel Rocha
- CEB-Centre of Biological Engineering, University of Minho, Campus de Gualtar, Braga, Portugal.,Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB-NOVA), Oeiras, Portugal
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18
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Zhou Q, Liu Y, Yuan W. Kinetic modeling of butyric acid effects on butanol fermentation by Clostridium saccharoperbutylacetonicum. N Biotechnol 2020; 55:118-126. [DOI: 10.1016/j.nbt.2019.10.004] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2018] [Revised: 09/04/2019] [Accepted: 10/09/2019] [Indexed: 01/05/2023]
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19
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Azimi H, Tezel H, Thibault J. Optimization of the in situ recovery of butanol from ABE fermentation broth via membrane pervaporation. Chem Eng Res Des 2019. [DOI: 10.1016/j.cherd.2019.07.012] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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20
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de Medeiros EM, Posada JA, Noorman H, Filho RM. Dynamic modeling of syngas fermentation in a continuous stirred-tank reactor: Multi-response parameter estimation and process optimization. Biotechnol Bioeng 2019; 116:2473-2487. [PMID: 31286472 PMCID: PMC9328424 DOI: 10.1002/bit.27108] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2019] [Revised: 06/11/2019] [Accepted: 07/03/2019] [Indexed: 01/06/2023]
Abstract
Syngas fermentation is one of the bets for the future sustainable biobased economies due to its potential as an intermediate step in the conversion of waste carbon to ethanol fuel and other chemicals. Integrated with gasification and suitable downstream processing, it may constitute an efficient and competitive route for the valorization of various waste materials, especially if systems engineering principles are employed targeting process optimization. In this study, a dynamic multi‐response model is presented for syngas fermentation with acetogenic bacteria in a continuous stirred‐tank reactor, accounting for gas–liquid mass transfer, substrate (CO, H2) uptake, biomass growth and death, acetic acid reassimilation, and product selectivity. The unknown parameters were estimated from literature data using the maximum likelihood principle with a multi‐response nonlinear modeling framework and metaheuristic optimization, and model adequacy was verified with statistical analysis via generation of confidence intervals as well as parameter significance tests. The model was then used to study the effects of process conditions (gas composition, dilution rate, gas flow rates, and cell recycle) as well as the sensitivity of kinetic parameters, and multiobjective genetic algorithm was used to maximize ethanol productivity and CO conversion. It was observed that these two objectives were clearly conflicting when CO‐rich gas was used, but increasing the content of H2 favored higher productivities while maintaining 100% CO conversion. The maximum productivity predicted with full conversion was 2 g·L−1·hr−1 with a feed gas composition of 54% CO and 46% H2 and a dilution rate of 0.06 hr−1 with roughly 90% of cell recycle.
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Affiliation(s)
- Elisa M de Medeiros
- Department of Biotechnology, Delft University of Technology, Delft, The Netherlands.,Laboratory of Optimization, Design and Advanced Control (LOPCA), School of Chemical Engineering, University of Campinas (UNICAMP), Campinas, São Paulo, Brazil
| | - John A Posada
- Department of Biotechnology, Delft University of Technology, Delft, The Netherlands
| | - Henk Noorman
- Department of Biotechnology, Delft University of Technology, Delft, The Netherlands.,DSM Biotechnology Center, Delft, The Netherlands
| | - Rubens Maciel Filho
- Laboratory of Optimization, Design and Advanced Control (LOPCA), School of Chemical Engineering, University of Campinas (UNICAMP), Campinas, São Paulo, Brazil
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21
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Kinetic study of butanol production from mixtures of glucose and xylose and investigation of different pre-growth strategies. Biochem Eng J 2019. [DOI: 10.1016/j.bej.2019.04.002] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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22
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Liposomes as models for membrane integrity. Biochem Soc Trans 2019; 47:919-932. [PMID: 31085615 DOI: 10.1042/bst20190123] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Revised: 04/18/2019] [Accepted: 04/23/2019] [Indexed: 12/23/2022]
Abstract
Biological membranes form the boundaries to cells. They are integral to cellular function, retaining the valuable components inside and preventing access of unwanted molecules. Many different classes of molecules demonstrate disruptive properties to the plasma membrane. These include alcohols, detergents and antimicrobial agents. Understanding this disruption and the mechanisms by which it can be mitigated is vital for improved therapeutics as well as enhanced industrial processes where the compounds produced can be toxic to the membrane. This mini-review describes the most common molecules that disrupt cell membranes along with a range of in vitro liposome-based techniques that can be used to monitor and delineate these disruptive processes.
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23
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Grisales Díaz VH, Willis MJ. Kinetic modelling and simulation of batch, continuous and cell-recycling fermentations for acetone-butanol-ethanol production using Clostridium saccharoperbutylacetonicum N1-4. Biochem Eng J 2018. [DOI: 10.1016/j.bej.2018.05.011] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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24
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Chen WH, Zeng YR. Mathematical model to appraise the inhibitory effect of phenolic compounds derived from lignin for biobutanol production. BIORESOURCE TECHNOLOGY 2018; 261:44-51. [PMID: 29653333 DOI: 10.1016/j.biortech.2018.04.010] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2018] [Revised: 03/30/2018] [Accepted: 04/02/2018] [Indexed: 06/08/2023]
Abstract
This study aimed to establish a mathematical modeling to evaluate the inhibitory effect of phenolic derivatives on acetone-butanol-ethanol (ABE) fermentation by Clostridium saccharoperbutylacetonicum N1-4. Vanillin, 4-hydroxybenzoic acid, and syringaldehyde were selected to represent guaiacyl, hydroxyphenyl, and syringyl phenols, respectively, to be examined in a series of fed-batch experiments. Results show the presence of phenolic derivatives blocked the pathway of the assimilation of organic acids and reduced cell growth and glucose utilization. The inhibition model projected that the levels of 0.13, 0.14, and 0.04 g L-1 for vanillin, 4-hydroxybenzoic acid, and syringaldehyde, respectively, resulted in 25% inhibition of butanol production, whereas 100% inhibition was predicted at the levels of 4.94, 4.37, and 4.20 g L-1 for vanillin, 4-hydroxybenzoic acid, and syringaldehyde, respectively. Syringaldehyde was more toxic than the other two compounds. The established model described that the phenolic compounds derived from different phenyl propane monomers of lignin severely obstructed biobutanol production.
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Affiliation(s)
- Wen-Hsing Chen
- Department of Environmental Engineering, National Ilan University, Yilan 260, Taiwan.
| | - Yan-Ru Zeng
- Department of Environmental Engineering, National Ilan University, Yilan 260, Taiwan
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25
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Artificial Neural Networks as Metamodels for the Multiobjective Optimization of Biobutanol Production. APPLIED SCIENCES-BASEL 2018. [DOI: 10.3390/app8060961] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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26
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Wang S, Dong S, Wang Y. Enhancement of solvent production by overexpressing key genes of the acetone-butanol-ethanol fermentation pathway in Clostridium saccharoperbutylacetonicum N1-4. BIORESOURCE TECHNOLOGY 2017; 245:426-433. [PMID: 28898840 DOI: 10.1016/j.biortech.2017.09.024] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2017] [Revised: 09/03/2017] [Accepted: 09/04/2017] [Indexed: 05/24/2023]
Abstract
Clostridium saccharoperbutylacetonicum N1-4 is well known as a hyper-butanol producing strain. However, little information is available concerning its butanol production mechanism and the development of more robust strains. In this study, key biosynthetic genes (either endogenous or exogenous) including the sol operon (bld-ctfA-ctfB-adc), adhE1, adhE1D485G, thl, thlA1V5A, thlAV5A and the expression cassette EC (thl-hbd-crt-bcd) were overexpressed in C. saccharoperbutylacetonicum N1-4 to evaluate their potential in enhancement of butanol production. The overexpression of sol operon increased ethanol production by 400%. The overexpression of adhE1 and adhED485G resulted in a 5.6- and 4.9-fold higher ethanol production, respectively, producing final acetone-butanol-ethanol (ABE) titers (30.6 and 30.1gL-1) of among the highest as ever reported for solventogenic clostridia. The most significant increase of butanol production (by 13.7%) and selectivity (73.7%) was achieved by the overexpression of EC. These results provides a solid foundation and essential references for the further development of more robust strains.
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Affiliation(s)
- Shaohua Wang
- Department of Biosystems Engineering, Auburn University, Auburn, AL 36849, USA
| | - Sheng Dong
- Department of Biosystems Engineering, Auburn University, Auburn, AL 36849, USA
| | - Yi Wang
- Department of Biosystems Engineering, Auburn University, Auburn, AL 36849, USA; Center for Bioenergy and Bioproducts, Auburn University, Auburn, AL 36849, USA.
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Genome Editing in Clostridium saccharoperbutylacetonicum N1-4 with the CRISPR-Cas9 System. Appl Environ Microbiol 2017; 83:AEM.00233-17. [PMID: 28258147 DOI: 10.1128/aem.00233-17] [Citation(s) in RCA: 59] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2017] [Accepted: 02/26/2017] [Indexed: 12/12/2022] Open
Abstract
Clostridium saccharoperbutylacetonicum N1-4 is well known as a hyper-butanol-producing strain. However, the lack of genetic engineering tools hinders further elucidation of its solvent production mechanism and development of more robust strains. In this study, we set out to develop an efficient genome engineering system for this microorganism based on the clustered regularly interspaced short palindromic repeats (CRISPR) and CRISPR-associated 9 (CRISPR-Cas9) system. First, the functionality of the CRISPR-Cas9 system previously customized for Clostridium beijerinckii was evaluated in C. saccharoperbutylacetonicum by targeting pta and buk, two essential genes for acetate and butyrate production, respectively. pta and buk single and double deletion mutants were successfully obtained based on this system. However, the genome engineering efficiency was rather low (the mutation rate is <20%). Therefore, the efficiency was further optimized by evaluating various promoters for guide RNA (gRNA) expression. With promoter P J23119 , we achieved a mutation rate of 75% for pta deletion without serial subculturing as suggested previously for C. beijerinckii Thus, this developed CRISPR-Cas9 system is highly desirable for efficient genome editing in C. saccharoperbutylacetonicum Batch fermentation results revealed that both the acid and solvent production profiles were altered due to the disruption of acid production pathways; however, neither acetate nor butyrate production was eliminated with the deletion of the corresponding gene. The butanol production, yield, and selectivity were improved in mutants, depending on the fermentation medium. In the pta buk double deletion mutant, the butanol production in P2 medium reached 19.0 g/liter, which is one of the highest levels ever reported from batch fermentations.IMPORTANCE An efficient CRISPR-Cas9 genome engineering system was developed for C. saccharoperbutylacetonicum N1-4. This paves the way for elucidating the solvent production mechanism in this hyper-butanol-producing microorganism and developing strains with desirable butanol-producing features. This tool can be easily adapted for use in closely related microorganisms. As also reported by others, here we demonstrated with solid data that the highly efficient expression of gRNA is the key factor determining the efficiency of CRISPR-Cas9 for genome editing. The protocol developed in this study can provide essential references for other researchers who work in the areas of metabolic engineering and synthetic biology. The developed mutants can be used as excellent starting strains for development of more robust ones for desirable solvent production.
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