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For: Bartholomé J, Bink MCAM, van Heerwaarden J, Chancerel E, Boury C, Lesur I, Isik F, Bouffier L, Plomion C. Linkage and Association Mapping for Two Major Traits Used in the Maritime Pine Breeding Program: Height Growth and Stem Straightness. PLoS One 2016;11:e0165323. [PMID: 27806077 PMCID: PMC5091878 DOI: 10.1371/journal.pone.0165323] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2016] [Accepted: 10/10/2016] [Indexed: 01/26/2023]  Open
Number Cited by Other Article(s)
1
Simões ASB, Borges MM, Grazina L, Nunes J. Stone Pine (Pinus pinea L.) High-Added-Value Genetics: An Overview. Genes (Basel) 2024;15:84. [PMID: 38254973 PMCID: PMC10815827 DOI: 10.3390/genes15010084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 01/05/2024] [Accepted: 01/08/2024] [Indexed: 01/24/2024]  Open
2
Freeman JS, Slavov GT, Butler JB, Frickey T, Graham NJ, Klápště J, Lee J, Telfer EJ, Wilcox P, Dungey HS. High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata. BMC Genomics 2022;23:731. [PMID: 36307760 PMCID: PMC9617409 DOI: 10.1186/s12864-022-08950-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 10/10/2022] [Indexed: 11/19/2022]  Open
3
Tan B, Ingvarsson PK. Integrating genome-wide association mapping of additive and dominance genetic effects to improve genomic prediction accuracy in Eucalyptus. THE PLANT GENOME 2022;15:e20208. [PMID: 35441826 DOI: 10.1002/tpg2.20208] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Accepted: 03/16/2022] [Indexed: 06/14/2023]
4
Hurel A, de Miguel M, Dutech C, Desprez‐Loustau M, Plomion C, Rodríguez‐Quilón I, Cyrille A, Guzman T, Alía R, González‐Martínez SC, Budde KB. Genetic basis of growth, spring phenology, and susceptibility to biotic stressors in maritime pine. Evol Appl 2021;14:2750-2772. [PMID: 34950227 PMCID: PMC8674897 DOI: 10.1111/eva.13309] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2019] [Accepted: 10/03/2021] [Indexed: 11/30/2022]  Open
5
Ahmar S, Ballesta P, Ali M, Mora-Poblete F. Achievements and Challenges of Genomics-Assisted Breeding in Forest Trees: From Marker-Assisted Selection to Genome Editing. Int J Mol Sci 2021;22:10583. [PMID: 34638922 PMCID: PMC8508745 DOI: 10.3390/ijms221910583] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Revised: 09/26/2021] [Accepted: 09/27/2021] [Indexed: 12/23/2022]  Open
6
Adoption and Optimization of Genomic Selection To Sustain Breeding for Apricot Fruit Quality. G3-GENES GENOMES GENETICS 2020;10:4513-4529. [PMID: 33067307 PMCID: PMC7718743 DOI: 10.1534/g3.120.401452] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
7
Maldonado C, Mora-Poblete F, Contreras-Soto RI, Ahmar S, Chen JT, do Amaral Júnior AT, Scapim CA. Genome-Wide Prediction of Complex Traits in Two Outcrossing Plant Species Through Deep Learning and Bayesian Regularized Neural Network. FRONTIERS IN PLANT SCIENCE 2020;11:593897. [PMID: 33329658 PMCID: PMC7728740 DOI: 10.3389/fpls.2020.593897] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2020] [Accepted: 10/27/2020] [Indexed: 05/25/2023]
8
Elfstrand M, Baison J, Lundén K, Zhou L, Vos I, Capador HD, Åslund MS, Chen Z, Chaudhary R, Olson Å, Wu HX, Karlsson B, Stenlid J, García-Gil MR. Association genetics identifies a specifically regulated Norway spruce laccase gene, PaLAC5, linked to Heterobasidion parviporum resistance. PLANT, CELL & ENVIRONMENT 2020;43:1779-1791. [PMID: 32276288 DOI: 10.1111/pce.13768] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Revised: 03/21/2020] [Accepted: 03/28/2020] [Indexed: 06/11/2023]
9
Hirao T, Matsunaga K, Hirakawa H, Shirasawa K, Isoda K, Mishima K, Tamura M, Watanabe A. Construction of genetic linkage map and identification of a novel major locus for resistance to pine wood nematode in Japanese black pine (Pinus thunbergii). BMC PLANT BIOLOGY 2019;19:424. [PMID: 31615405 PMCID: PMC6792208 DOI: 10.1186/s12870-019-2045-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Accepted: 09/20/2019] [Indexed: 05/21/2023]
10
Ballesta P, Maldonado C, Pérez-Rodríguez P, Mora F. SNP and Haplotype-Based Genomic Selection of Quantitative Traits in Eucalyptus globulus. PLANTS 2019;8:plants8090331. [PMID: 31492041 PMCID: PMC6783840 DOI: 10.3390/plants8090331] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/25/2019] [Revised: 09/02/2019] [Accepted: 09/03/2019] [Indexed: 01/02/2023]
11
Liu J, Sun Z, Mao X, Gerken H, Wang X, Yang W. Multiomics analysis reveals a distinct mechanism of oleaginousness in the emerging model alga Chromochloris zofingiensis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019;98:745-758. [PMID: 30828893 DOI: 10.1111/tpj.14270] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2018] [Revised: 12/24/2018] [Accepted: 01/28/2019] [Indexed: 05/03/2023]
12
Calleja-Rodriguez A, Li Z, Hallingbäck HR, Sillanpää MJ, Wu HX, Abrahamsson S, García-Gil MR. Analysis of phenotypic- and Estimated Breeding Values (EBV) to dissect the genetic architecture of complex traits in a Scots pine three-generation pedigree design. J Theor Biol 2019;462:283-292. [PMID: 30423305 DOI: 10.1016/j.jtbi.2018.11.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2018] [Revised: 10/17/2018] [Accepted: 11/09/2018] [Indexed: 11/28/2022]
13
Müller BSF, de Almeida Filho JE, Lima BM, Garcia CC, Missiaggia A, Aguiar AM, Takahashi E, Kirst M, Gezan SA, Silva-Junior OB, Neves LG, Grattapaglia D. Independent and Joint-GWAS for growth traits in Eucalyptus by assembling genome-wide data for 3373 individuals across four breeding populations. THE NEW PHYTOLOGIST 2019;221:818-833. [PMID: 30252143 DOI: 10.1111/nph.15449] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2018] [Accepted: 08/13/2018] [Indexed: 05/18/2023]
14
Bali S, Robinson BR, Sathuvalli V, Bamberg J, Goyer A. Single Nucleotide Polymorphism (SNP) markers associated with high folate content in wild potato species. PLoS One 2018;13:e0193415. [PMID: 29474475 PMCID: PMC5825101 DOI: 10.1371/journal.pone.0193415] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2018] [Accepted: 02/09/2018] [Indexed: 11/23/2022]  Open
15
Lesur I, Alexandre H, Boury C, Chancerel E, Plomion C, Kremer A. Development of Target Sequence Capture and Estimation of Genomic Relatedness in a Mixed Oak Stand. FRONTIERS IN PLANT SCIENCE 2018;9:996. [PMID: 30057586 PMCID: PMC6053538 DOI: 10.3389/fpls.2018.00996] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2018] [Accepted: 06/19/2018] [Indexed: 05/19/2023]
16
Müller BSF, Neves LG, de Almeida Filho JE, Resende MFR, Muñoz PR, Dos Santos PET, Filho EP, Kirst M, Grattapaglia D. Genomic prediction in contrast to a genome-wide association study in explaining heritable variation of complex growth traits in breeding populations of Eucalyptus. BMC Genomics 2017;18:524. [PMID: 28693539 PMCID: PMC5504793 DOI: 10.1186/s12864-017-3920-2] [Citation(s) in RCA: 53] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2016] [Accepted: 07/03/2017] [Indexed: 02/05/2023]  Open
17
Correction: Linkage and Association Mapping for Two Major Traits Used in the Maritime Pine Breeding Program: Height Growth and Stem Straightness. PLoS One 2017;12:e0171439. [PMID: 28135319 PMCID: PMC5279804 DOI: 10.1371/journal.pone.0171439] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
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