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Uppal G, Vural DC. On the possibility of engineering social evolution in microfluidic environments. Biophys J 2024; 123:407-419. [PMID: 38204167 PMCID: PMC10870175 DOI: 10.1016/j.bpj.2024.01.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Revised: 12/18/2023] [Accepted: 01/04/2024] [Indexed: 01/12/2024] Open
Abstract
Many species of microbes cooperate by producing public goods from which they collectively benefit. However, these populations are under the risk of being taken over by cheating mutants that do not contribute to the pool of public goods. Here we present theoretical findings that address how the social evolution of microbes can be manipulated by external perturbations to inhibit or promote the fixation of cheaters. To control social evolution, we determine the effects of fluid-dynamical properties such as flow rate or domain geometry. We also study the social evolutionary consequences of introducing beneficial or harmful chemicals at steady state and in a time-dependent fashion. We show that by modulating the flow rate and by applying pulsed chemical signals, we can modulate the spatial structure and dynamics of the population in a way that can select for more or less cooperative microbial populations.
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Affiliation(s)
- Gurdip Uppal
- Harvard Medical School, Boston, Massachusetts; Division of Computational Pathology, Brigham and Women's hospital, Boston, Massachusetts
| | - Dervis Can Vural
- Department of Physics, University of Notre Dame, Notre Dame, Indiana.
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Microbial ecology of biofiltration used for producing safe drinking water. Appl Microbiol Biotechnol 2022; 106:4813-4829. [PMID: 35771243 PMCID: PMC9329406 DOI: 10.1007/s00253-022-12013-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Revised: 06/01/2022] [Accepted: 06/03/2022] [Indexed: 11/24/2022]
Abstract
Abstract
Biofiltration is a water purification technology playing a pivotal role in producing safe drinking water. This technology attracts many interests worldwide due to its advantages, such as no addition of chemicals, a low energy input, and a high removal efficiency of organic compounds, undesirable taste and odours, and pathogens. The current review describes the microbial ecology of three biofiltration processes that are routinely used in drinking water treatment plants, i.e. (i) rapid sand filtration (RSF), (ii) granular activated carbon filtration (GACF), and (iii) slow sand filtration (SSF). We summarised and compared the characteristics, removal performance, and corresponding (newly revealed) mechanisms of the three biofiltration processes. Specifically, the microbial ecology of the different biofilter processes and the role of microbial communities in removing nutrients, organic compounds, and pathogens were reviewed. Finally, we highlight the limitations and challenges in the study of biofiltration in drinking water production, and propose future perspectives for obtaining a comprehensive understanding of the microbial ecology of biofiltration, which is needed to promote and optimise its further application. Key points • Biofilters are composed of complex microbiomes, primarily shaped by water quality. • Conventional biofilters contribute to address safety challenges in drinking water. • Studies may underestimate the active/functional role of microbiomes in biofilters. Supplementary Information The online version contains supplementary material available at 10.1007/s00253-022-12013-x.
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Liu L, Huang L, Yu D, Zhang G, Dong S. FeS 2 nanoparticles decorated carbonized Luffa cylindrica as biofilm substrates for fabricating high performance biosensors. Talanta 2021; 232:122416. [PMID: 34074404 DOI: 10.1016/j.talanta.2021.122416] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Revised: 03/29/2021] [Accepted: 04/07/2021] [Indexed: 11/29/2022]
Abstract
A high-performance microbial biosensor was fabricated with a reasonably designed biofilm substrate, where the aerogel of carbonized Luffa cylindrica (LC) was used as the scaffold for loading biofilm and FeS2 nanoparticles (FeS2NPs) were employed to modify this aerogel (FeS2NPs/GelLC). The fabricated FeS2NPs/GelLC exhibited a spring-like structure similar with that of the raw LC, which facilitated the linkage of the scaffold and promoted its mechanical strength, and further prolonged the service period of the as-prepared biosensor from few days to two months. Meanwhile, the introduced FeS2NPs improved the microbial electron transfer of the biofilm and causing an increase in the sensor's signals from 155.0 ± 2.6 to 352.0 ± 17.1 nA and a decrease in the detection limit from 0.95 to 0.38 mg O L-1 (S/N = 3) for the detection of glucose-glutamic acid (GGA). More important, the FeS2NPs had been demonstrated to have the capability for modulating a persistent shift of the microbial community with organic pollutant biodegradability. Compared with the GelLC, the FeS2NPs/GelLC exhibited a promising performance for measuring the synthetic sewage and real water samples in BOD assay and an increasing inhibition-ratio for detecting 3,5-dichlorophenol (DCP) in toxicity assay. Based on the vast resource and renewability of LC, this work pave a new avenue for developing high-performance microbial biosensors that are expected to be the engineering production.
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Affiliation(s)
- Ling Liu
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, The High-tech North District, 4888 Sheng Bei Street, Changchun, 130102, PR China; State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, 130022, PR China; University of the Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Liang Huang
- State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, 130022, PR China
| | - Dengbin Yu
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, The High-tech North District, 4888 Sheng Bei Street, Changchun, 130102, PR China; State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, 130022, PR China; University of the Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Guangxin Zhang
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, The High-tech North District, 4888 Sheng Bei Street, Changchun, 130102, PR China; University of the Chinese Academy of Sciences, Beijing, 100049, PR China.
| | - Shaojun Dong
- State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, 130022, PR China; University of the Chinese Academy of Sciences, Beijing, 100049, PR China.
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Reyes J, Toledo M, Michán C, Siles JA, Alhama J, Martín MA. Biofiltration of butyric acid: Monitoring odor abatement and microbial communities. ENVIRONMENTAL RESEARCH 2020; 190:110057. [PMID: 32805248 DOI: 10.1016/j.envres.2020.110057] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2020] [Revised: 07/10/2020] [Accepted: 08/07/2020] [Indexed: 06/11/2023]
Abstract
The objective of this study is to evaluate comparatively the odor removal efficacy of two biofilters operated under different conditions and to identify taxonomically the microbial communities responsible for butyric acid degradation. Both biofiltration systems, which were filled with non-inoculated wood chips and exposed to gas streams containing butyric acid, were evaluated under different operational conditions (gas airflow and temperature) from the physical-chemical, microbiological and olfactometric points of view. The physical-chemical characterization showed the acidification of the packing material and the accumulation of butyric acid during the biofiltration process (<60 days). The removal efficacy was found to be 98-100% during the first 20 days of operation, even at high odor concentration. Changes in the operational temperature increased the odor load factor from 400 to 1400 ouE/m2·s, which led to the reduction of microbiota in the packing material, and a drastic drop of the odor removal efficacy. However, the progressive increase in gas airflow improved the biodegradation efficacy of butyric acid up to 88% with odor loadings as high as 33,000 ouE/m3, while a linear relationship between odor inlet load and removal capacity was also found. The analysis of the microbial community showed that Proteobacteria was the most abundant phylum along the biofiltration time (58-92%) and regardless of the operational conditions. Finally, principal component analysis applied to the physical-chemical and microbiological data set revealed significant differences between the two biofilters under study.
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Affiliation(s)
- J Reyes
- Chemical Engineering Department, University of Cordoba, Campus Universitario de Rabanales, Ctra. N-IV, Km 396, Building Marie Curie (C-3), 14071, Córdoba, Spain
| | - M Toledo
- Chemical Engineering Department, University of Cordoba, Campus Universitario de Rabanales, Ctra. N-IV, Km 396, Building Marie Curie (C-3), 14071, Córdoba, Spain
| | - C Michán
- Department of Biochemistry and Molecular Biology, University of Cordoba, Campus Universitario de Rabanales, Ctra. N-IV, Km 396, Building Severo Ochoa, 14071, Córdoba, Spain
| | - J A Siles
- Chemical Engineering Department, University of Cordoba, Campus Universitario de Rabanales, Ctra. N-IV, Km 396, Building Marie Curie (C-3), 14071, Córdoba, Spain
| | - J Alhama
- Department of Biochemistry and Molecular Biology, University of Cordoba, Campus Universitario de Rabanales, Ctra. N-IV, Km 396, Building Severo Ochoa, 14071, Córdoba, Spain
| | - M A Martín
- Chemical Engineering Department, University of Cordoba, Campus Universitario de Rabanales, Ctra. N-IV, Km 396, Building Marie Curie (C-3), 14071, Córdoba, Spain.
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Wu H, Guo C, Yin Z, Quan Y, Yin C. Performance and bacterial diversity of biotrickling filters filled with conductive packing material for the treatment of toluene. BIORESOURCE TECHNOLOGY 2018; 257:201-209. [PMID: 29501953 DOI: 10.1016/j.biortech.2018.02.108] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2018] [Revised: 02/20/2018] [Accepted: 02/22/2018] [Indexed: 06/08/2023]
Abstract
Toluene has high toxicity and mutagenicity, thus, the removal of toluene from air is necessary. In this study, two biotrickling filters (BTFs) were constructed and packed with conductive packing material to treat toluene waste gas. BTF-O exhibited good toluene removal performance even under high toluene inlet concentration, and over 80% of removal efficiency was observed. The elimination capacity reached 120.1 g/m3 h corresponding to an inlet concentration of 2.259 g/m3 under 61.5 s of empty bed retention time. During toluene biodegradation, the output voltage was observed in BTF-O and BTF-E, moreover BTF-E also showed slight power storage capacity. The applied voltage inhibited toluene removal and affected the bacterial community. The predominant bacterial genera in BTF-O were Acidovorax, Rhodococcus, Hydrogenophaga, Brevundimonas, Arthrobacter, Pseudoxanthomonas, Devosia, Gemmobacter, Rhizobium, Dokdonella and Pseudomonas. Genera Xanthobacter and Pelomonas accounted for the main bacterial community in BTF-E.
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Affiliation(s)
- Hao Wu
- Key Laboratory of Natural Resources of Changbai Mountain and Functional Molecules, Department of Chemistry, Yanbian University, Yanji 133002, China
| | - Chunyu Guo
- Key Laboratory of Natural Resources of Changbai Mountain and Functional Molecules, Department of Chemistry, Yanbian University, Yanji 133002, China
| | - Zhenhao Yin
- Analytical and Testing Center, Yanbian University, Yanji 133002, China
| | - Yue Quan
- Key Laboratory of Natural Resources of Changbai Mountain and Functional Molecules, Department of Chemistry, Yanbian University, Yanji 133002, China
| | - Chengri Yin
- Key Laboratory of Natural Resources of Changbai Mountain and Functional Molecules, Department of Chemistry, Yanbian University, Yanji 133002, China; Analytical and Testing Center, Yanbian University, Yanji 133002, China.
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Gerrity D, Arnold M, Dickenson E, Moser D, Sackett JD, Wert EC. Microbial community characterization of ozone-biofiltration systems in drinking water and potable reuse applications. WATER RESEARCH 2018; 135:207-219. [PMID: 29477059 DOI: 10.1016/j.watres.2018.02.023] [Citation(s) in RCA: 49] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2017] [Revised: 02/07/2018] [Accepted: 02/08/2018] [Indexed: 05/16/2023]
Abstract
Microbial community structure in the ozone-biofiltration systems of two drinking water and two wastewater treatment facilities was characterized using 16S rRNA gene sequencing. Collectively, these datasets enabled comparisons by facility, water type (drinking water, wastewater), pre-oxidation (ozonation, chlorination), media type (anthracite, activated carbon), media depth, and backwash dynamics. Proteobacteria was the most abundant phylum in drinking water filters, whereas Bacteroidetes, Chloroflexi, Firmicutes, and Planctomycetes were differentially abundant in wastewater filters. A positive correlation was observed between media depth and relative abundance of Cyanobacteria in drinking water filters, but there was only a slight increase in one alpha diversity metric with depth in the wastewater filters. Media type had a significant effect on beta but not alpha diversity in drinking water and wastewater filters. Pre-ozonation caused a significant decrease in alpha diversity in the wastewater filters, but the effect on beta diversity was not statistically significant. An evaluation of backwash dynamics resulted in two notable observations: (1) endosymbionts such as Neochlamydia and Legionella increased in relative abundance following backwashing and (2) nitrogen-fixing Bradyrhizobium dominated the microbial community in wastewater filters operated with infrequent backwashing. Bradyrhizobium is known to generate extracellular polymeric substances (EPS), which may adversely impact biofilter performance and effluent water quality. These findings have important implications for public health and the operation and resiliency of biofiltration systems.
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Affiliation(s)
- Daniel Gerrity
- Department of Civil and Environmental Engineering and Construction, University of Nevada, Las Vegas, Box 454015, 4505 S. Maryland Parkway, Las Vegas, NV 89154-4015, United States.
| | - Mayara Arnold
- Department of Civil and Environmental Engineering and Construction, University of Nevada, Las Vegas, Box 454015, 4505 S. Maryland Parkway, Las Vegas, NV 89154-4015, United States
| | - Eric Dickenson
- Applied Research and Development Center, Southern Nevada Water Authority, P.O. Box 99954, Las Vegas, NV 89193, United States
| | - Duane Moser
- Desert Research Institute, 755 E. Flamingo Rd. Las Vegas, NV 89119, United States
| | - Joshua D Sackett
- Desert Research Institute, 755 E. Flamingo Rd. Las Vegas, NV 89119, United States; School of Life Sciences, University of Nevada, Las Vegas, 4505 S. Maryland Parkway, Las Vegas, NV 89154-4015, United States
| | - Eric C Wert
- Applied Research and Development Center, Southern Nevada Water Authority, P.O. Box 99954, Las Vegas, NV 89193, United States
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Mezgebe B, Palanisamy K, Sorial GA, Sahle-Demessie E, Hassan AA, Lu J. Comparative Study on the Performance of Anaerobic and Aerobic Biotrickling Filter for Removal of Chloroform. ENVIRONMENTAL ENGINEERING SCIENCE 2018; 35:462-471. [PMID: 32704228 PMCID: PMC7376754 DOI: 10.1089/ees.2017.0275] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Use of biotrickling filter (BTF) for gas phase treatment of volatile trihalomethanes (THMs) stripped from water treatment plants could be an attractive treatment option. The aim of this study is to use laboratory-scale anaerobic BTF to treat gaseous chloroform (recalcitrant to biological transformation) as a model THM and compare results with aerobic BTF. Additional investigations were conducted to determine the microbial diversity present within the BTFs. Chloroform is a hydrophobic volatile THM known to be difficult to biodegrade. To improve the degradation process, ethanol was used as a cometabolite at a different ratio to chloroform. The experimental plan was designed to operate one BTF under anaerobic condition and the other one under aerobic acidic condition. Higher elimination capacity (EC) of 0.23 ± 0.01 g/[m3·h] was observed with a removal efficiency of 80.9% ± 4% for the aerobic BTF operating at pH 4 for the concentration ratio of 1:40 chloroform to ethanol. For similar ratio, the anaerobic BTF supported lower removal efficiency of 59% ± 10% with corresponding lower EC of 0.16 ± 0.01 g/[m3·h]. Carbon recovery acquired for anaerobic and aerobic BTFs was 59% and 63%, respectively. The loading rate for chloroform on both BTFs was 0.27 g/[m3·h] (per m3 of filter bed volume). Variations of the microbial community were attributed to degradation of chloroform in each BTF. Azospira oryzae and Azospira restrica were the dominant bacteria and potential candidates for chloroform degradation for the anaerobic BTF, whereas Fusarium sp. and Fusarium solani were the dominant fungi and potential candidates for chloroform degradation in the aerobic BTF.
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Affiliation(s)
- Bineyam Mezgebe
- Department of Chemical and Environmental Engineering, College of Engineering and Applied Science, University of Cincinnati, Cincinnati, Ohio
| | - Keerthisaranya Palanisamy
- Department of Chemical and Environmental Engineering, College of Engineering and Applied Science, University of Cincinnati, Cincinnati, Ohio
| | - George A Sorial
- Department of Chemical and Environmental Engineering, College of Engineering and Applied Science, University of Cincinnati, Cincinnati, Ohio
| | - Endalkachew Sahle-Demessie
- US Environmental Protection Agency, Office of Research and Development, National Risk Management Research Laboratory, Cincinnati, Ohio
| | - Ashraf Aly Hassan
- Department of Civil Engineering, College of Engineering, University of Nebraska-Lincoln, Lincoln, Nebraska
| | - Jingrang Lu
- US Environmental Protection Agency, Office of Research and Development, National Risk Management Research Laboratory, Cincinnati, Ohio
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Mezgebe B, Sorial GA, Sahle-Demessie E, Hassan AA, Lu J. Performance of Anaerobic Biotrickling Filter and its Microbial Diversity for the Removal of Stripped Disinfection Byproducts. WATER, AIR, AND SOIL POLLUTION 2017; 228:1-437. [PMID: 29225380 PMCID: PMC5716356 DOI: 10.1007/s11270-017-3616-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2017] [Accepted: 10/18/2017] [Indexed: 05/29/2023]
Abstract
The objective of this research was to evaluate the biodegradation of chloroform by using biotrickling filter (BTF) and determining the dominant bacteria responsible for the degradation. The research was conducted in three phases under anaerobic condition, namely, in the presence of co-metabolite (Phase I), in the presence of co-metabolite and surfactant (Phase II) and in the presence of surfactant but no co-metabolite (Phase III). The results showed that the presence of ethanol as a co-metabolite provided 49% removal efficiency. The equivalent elimination capacity (EC) was 0.13 g/(m3.hr). The addition of Tomadol 25 - 7 as a surfactant in the nutrient solution increased the removal efficiency of chloroform to 64% with corresponding EC of 0.17 g/(m3.hr). This research also investigated the overall microbial ecology of the BTF utilizing culture-independent gene sequencing alignment of the 16S rRNA allowing identification of isolated species. Taxonomical composition revealed the abundance of deltaproteobacteria and deltaproteobacteria with species level of 97%. A. oryzae (formally dechlorosoma suillum), A. restrica and Geobacter spp. together with other similar groups were the most valuable bacteria for the degradation of chloroform.
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Affiliation(s)
- Bineyam Mezgebe
- PhD Candidate, Department of Biomedical, Chemical, and Environmental Engineering, College of Engineering and Applied Science, University of Cincinnati, 701 Engineering Research Center, 2901 Woodside Drive, P.O. Box 210012, Cincinnati, OH 45221-0012, USA
| | - George A. Sorial
- Author to whom all correspondence should be addressed, , Tel: +1 (513) 556-2987
| | - E. Sahle-Demessie
- Senior Scientist, US Environmental Protection Agency, Office of Research and Development, National Risk Management Research Laboratory, Cincinnati, OH 45268, USA
| | - Ashraf Aly Hassan
- Research Assistant Professor, Department of Civil Engineering, College of Engineering, University of Nebraska–Lincoln, P.O. Box 886105, Lincoln, NE 68588-6105
| | - Jingrang Lu
- US Environmental Protection Agency, National Exposure Research Laboratory, Cincinnati, OH, USA
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