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Podgórski T, Pepin KM, Radko A, Podbielska A, Łyjak M, Woźniakowski G, Borowik T. How do genetic relatedness and spatial proximity shape African swine fever infections in wild boar? Transbound Emerg Dis 2021; 69:2656-2666. [PMID: 34902218 DOI: 10.1111/tbed.14418] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Revised: 10/31/2021] [Accepted: 11/30/2021] [Indexed: 11/29/2022]
Abstract
The importance of social and spatial structuring of wildlife populations for disease spread, though widely recognized, is still poorly understood in many host-pathogen systems. In particular, system specific kin relationships among hosts can create contact heterogeneities and differential disease transmission rates. Here, we investigate how distance-dependent infection risk is influenced by genetic relatedness in a novel host-pathogen system: wild boar (Sus scrofa) and African swine fever (ASF). We hypothesized that infection risk would correlate positively with proximity and relatedness to ASF-infected individuals but expected those relationships to weaken with distance between individuals due to decay in contact rates and genetic similarity. We genotyped 323 wild boar samples (243 ASF-negative and 80 ASF-positive) collected in north-eastern Poland in 2014-2016 and modeled the effects of geographic distance, genetic relatedness, and ASF virus transmission mode (direct or carcass-based) on the probability of ASF infection. Infection risk was positively associated with spatial proximity and genetic relatedness to infected individuals with generally stronger effect of distance. In the high-contact zone (0-2 km), infection risk was shaped by the presence of infected individuals rather than by relatedness to them. In the medium-contact zone (2-5 km), infection risk decreased but was still associated with relatedness and paired infections were more frequent among relatives. At farther distances, infection risk further declined with relatedness and proximity to positive individuals, and was 60% lower among unrelated individuals in the no-contact zone (33% in10-20 km) compared with among relatives in the high-contact zone (93% in 0-2 km). Transmission mode influenced the relationship between proximity or relatedness and infection risk. Our results indicate that the presence of nearby infected individuals is most important for shaping ASF infection rates through carcass-based transmission, while relatedness plays an important role in shaping transmission rates between live animals. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Tomasz Podgórski
- Mammal Research Institute, Polish Academy of Sciences, Stoczek 1, Białowieża, 17-230, Poland.,Department of Game Management and Wildlife Biology, Faculty of Forestry and Wood Sciences, Czech University of Life Sciences, Kamýcká 129, Prague, 165 00, Czech Republic
| | - Kim M Pepin
- National Wildlife Research Center, USDA, APHIS, Wildlife Services, 4101 Laporte Ave., Fort Collins, CO, 80526
| | - Anna Radko
- Department of Animal Molecular Biology, National Research Institute of Animal Production, Krakowska 1, Balice, 32-083, Poland
| | - Angelika Podbielska
- Department of Animal Molecular Biology, National Research Institute of Animal Production, Krakowska 1, Balice, 32-083, Poland
| | - Magdalena Łyjak
- Department of Swine Diseases, National Veterinary Research Institute, Partyzantów 57, Pulawy, 24-100, Poland
| | - Grzegorz Woźniakowski
- Deparment of Diagnosis and Clinical Sciences, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University, Lwowska 1, Torun, 87-100, Poland
| | - Tomasz Borowik
- Mammal Research Institute, Polish Academy of Sciences, Stoczek 1, Białowieża, 17-230, Poland
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2
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Baker CJ, Frère CH, Franklin CE, Campbell HA, Irwin TR, Dwyer RG. Crocodile social environments dictated by male philopatry. Behav Ecol 2021. [DOI: 10.1093/beheco/arab120] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
Examining the social behaviors of solitary species can be challenging due to the rarity in which interactions occur and the large and often inaccessible areas which these animals inhabit. As shared space-use is a prerequisite for the expression of social behaviors, we can gain insights into the social environments of solitary species by examining the degree of spatial overlap between individuals. Over a 10-year period, we examined how spatial overlap amongst 105 estuarine crocodiles Crocodylus porosus was influenced by season, sex, and movement tactic. We discovered that crocodiles displayed highly consistent spatial overlaps with conspecifics between months and across years. Furthermore, male crocodiles that exhibited a greater degree of site fidelity displayed more stable social environments, while females and males that were less site-attached had more dynamic social environments with spatial overlaps between conspecifics peaking during the mating season. Our results demonstrate how long-term tracking of multiple individuals within the same population can be used to quantify the spatial structure and social environment of cryptic and solitary species.
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Affiliation(s)
- Cameron J Baker
- The School of Biological Sciences, The University of Queensland, Brisbane, Australia
| | - Céline H Frère
- Global Change Ecology Research Group, University of the Sunshine Coast, Sippy Downs, Australia
| | - Craig E Franklin
- The School of Biological Sciences, The University of Queensland, Brisbane, Australia
| | - Hamish A Campbell
- Research Institute for Environment & Livelihoods, Charles Darwin University, Darwin, Northern Territory, Australia
| | - Terri R Irwin
- Australia Zoo, 1638 Steve Irwin Way, Beerwah, Australia
| | - Ross G Dwyer
- The School of Biological Sciences, The University of Queensland, Brisbane, Australia
- Global Change Ecology Research Group, University of the Sunshine Coast, Sippy Downs, Australia
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3
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CHRONIC WASTING DISEASE MODELING: AN OVERVIEW. J Wildl Dis 2021; 56:741-758. [PMID: 32544029 DOI: 10.7589/2019-08-213] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2019] [Accepted: 11/13/2019] [Indexed: 11/20/2022]
Abstract
Chronic wasting disease (CWD) is an infectious and fatal prion disease occurring in the family Cervidae. To update the research community regarding the status quo of CWD epidemic models, we conducted a meta-analysis on CWD research. We collected data from peer-reviewed articles published since 1980, when CWD was first diagnosed, until December 2018. We explored the analytical methods used historically to understand CWD. We used 14 standardized variables to assess overall analytical approaches of CWD research communities, data used, and the modeling methods used. We found that CWD modeling initiated in the early 2000s and has increased since then. Connectivity of the research community was heavily reliant on a cluster of CWD researchers. Studies focused primarily on regression and compartment-based models, population-level approaches, and host species of game management concern. Similarly, CWD research focused on single populations, species, and locations, neglecting modeling using community ecology and biogeographic approaches. Chronic wasting disease detection relied on classic diagnostic methods with limited sensitivity for most stages of infection. Overall, we found that past modeling efforts generated a solid baseline for understanding CWD in wildlife and increased our knowledge on infectious prion ecology. Future analytical efforts should consider more sensitive diagnostic methods to quantify uncertainty and broader scale studies to elucidate CWD transmission beyond population-level approaches. Considering that infectious prions may not follow biological rules of well-known wildlife pathogens (i.e., viruses, bacteria, fungi), assumptions used when modeling other infectious disease may not apply for CWD. Chronic wasting disease is a new challenge in wildlife epidemiology.
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Zhang Y, Gargan S, Lu Y, Stevenson NJ. An Overview of Current Knowledge of Deadly CoVs and Their Interface with Innate Immunity. Viruses 2021; 13:560. [PMID: 33810391 PMCID: PMC8066579 DOI: 10.3390/v13040560] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Revised: 03/12/2021] [Accepted: 03/16/2021] [Indexed: 02/06/2023] Open
Abstract
Coronaviruses are a large family of zoonotic RNA viruses, whose infection can lead to mild or lethal respiratory tract disease. Severe Acute Respiratory Syndrome-Coronavirus-1 (SARS-CoV-1) first emerged in Guangdong, China in 2002 and spread to 29 countries, infecting 8089 individuals and causing 774 deaths. In 2012, Middle East Respiratory Syndrome-Coronavirus (MERS-CoV) emerged in Saudi Arabia and has spread to 27 countries, with a mortality rate of ~34%. In 2019, SARS-CoV-2 emerged and has spread to 220 countries, infecting over 100,000,000 people and causing more than 2,000,000 deaths to date. These three human coronaviruses cause diseases of varying severity. Most people develop mild, common cold-like symptoms, while some develop acute respiratory distress syndrome (ARDS). The success of all viruses, including coronaviruses, relies on their evolved abilities to evade and modulate the host anti-viral and pro-inflammatory immune responses. However, we still do not fully understand the transmission, phylogeny, epidemiology, and pathogenesis of MERS-CoV and SARS-CoV-1 and -2. Despite the rapid application of a range of therapies for SARS-CoV-2, such as convalescent plasma, remdesivir, hydroxychloroquine and type I interferon, no fully effective treatment has been determined. Remarkably, COVID-19 vaccine research and development have produced several offerings that are now been administered worldwide. Here, we summarise an up-to-date understanding of epidemiology, immunomodulation and ongoing anti-viral and immunosuppressive treatment strategies. Indeed, understanding the interplay between coronaviruses and the anti-viral immune response is crucial to identifying novel targets for therapeutic intervention, which may even prove invaluable for the control of future emerging coronavirus.
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Affiliation(s)
- Yamei Zhang
- Viral Immunology Group, School of Biochemistry and Immunology, Trinity Biomedical Sciences Institute, Trinity College Dublin, D02 R590 Dublin, Ireland; (Y.Z.); (S.G.)
| | - Siobhan Gargan
- Viral Immunology Group, School of Biochemistry and Immunology, Trinity Biomedical Sciences Institute, Trinity College Dublin, D02 R590 Dublin, Ireland; (Y.Z.); (S.G.)
| | - Yongxu Lu
- Department of Pathology, University of Cambridge, Cambridge CB2 1QP, UK;
| | - Nigel J. Stevenson
- Viral Immunology Group, School of Biochemistry and Immunology, Trinity Biomedical Sciences Institute, Trinity College Dublin, D02 R590 Dublin, Ireland; (Y.Z.); (S.G.)
- Viral Immunology Group, Royal College of Surgeons in Ireland—Medical University of Bahrain, Adliya 15503, Bahrain
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Mysterud A, Madslien K, Viljugrein H, Vikøren T, Andersen R, Güere ME, Benestad SL, Hopp P, Strand O, Ytrehus B, Røed KH, Rolandsen CM, Våge J. The demographic pattern of infection with chronic wasting disease in reindeer at an early epidemic stage. Ecosphere 2019. [DOI: 10.1002/ecs2.2931] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Affiliation(s)
- Atle Mysterud
- Centre for Ecological and Evolutionary Synthesis (CEES) Department of Biosciences University of Oslo NO‐0316 P.O. Box 1066 Blindern Oslo Norway
| | - Knut Madslien
- Norwegian Veterinary Institute NO‐0106 P.O. Box 750 Sentrum Oslo Norway
| | | | - Turid Vikøren
- Norwegian Veterinary Institute NO‐0106 P.O. Box 750 Sentrum Oslo Norway
| | - Roy Andersen
- Norwegian Institute for Nature Research (NINA) NO‐7485 P. O. Box 5685 Torgarden Trondheim Norway
| | - Mariella Evelyn Güere
- Department of Basic Sciences and Aquatic Medicine Norwegian University of Life Sciences NO‐0102 P.O. Box 369 Sentrum Oslo Norway
| | | | - Petter Hopp
- Norwegian Veterinary Institute NO‐0106 P.O. Box 750 Sentrum Oslo Norway
| | - Olav Strand
- Norwegian Institute for Nature Research (NINA) NO‐7485 P. O. Box 5685 Torgarden Trondheim Norway
| | - Bjørnar Ytrehus
- Norwegian Institute for Nature Research (NINA) NO‐7485 P. O. Box 5685 Torgarden Trondheim Norway
| | - Knut H. Røed
- Department of Basic Sciences and Aquatic Medicine Norwegian University of Life Sciences NO‐0102 P.O. Box 369 Sentrum Oslo Norway
| | - Christer M. Rolandsen
- Norwegian Institute for Nature Research (NINA) NO‐7485 P. O. Box 5685 Torgarden Trondheim Norway
| | - Jørn Våge
- Norwegian Veterinary Institute NO‐0106 P.O. Box 750 Sentrum Oslo Norway
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Muller Z, Cuthill IC, Harris S. Giraffe (
Giraffa camelopardalis
) social networks in areas of contrasting human activity and lion density. Ethology 2019. [DOI: 10.1111/eth.12923] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Zoe Muller
- School of Biological Sciences University of Bristol Bristol UK
- Giraffe Research & Conservation Trust Nairobi Kenya
| | | | - Stephen Harris
- School of Biological Sciences University of Bristol Bristol UK
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Portanier E, Garel M, Devillard S, Maillard D, Poissant J, Galan M, Benabed S, Poirel MT, Duhayer J, Itty C, Bourgoin G. Both candidate gene and neutral genetic diversity correlate with parasite resistance in female Mediterranean mouflon. BMC Ecol 2019; 19:12. [PMID: 30836982 PMCID: PMC6402107 DOI: 10.1186/s12898-019-0228-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2018] [Accepted: 02/23/2019] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Parasite infections can have substantial impacts on population dynamics and are accordingly a key challenge for wild population management. Here we studied genetic mechanisms driving parasite resistance in a large herbivore through a comprehensive approach combining measurements of neutral (16 microsatellites) and adaptive (MHC DRB1 exon 2) genetic diversity and two types of gastrointestinal parasites (nematodes and coccidia). RESULTS While accounting for other extrinsic and intrinsic predictors known to impact parasite load, we show that both neutral genetic diversity and DRB1 are associated with resistance to gastrointestinal nematodes. Intermediate levels of multi-locus heterozygosity maximized nematodes resistance, suggesting that both in- and outbreeding depression might occur in the population. DRB1 heterozygosity and specific alleles effects were detected, suggesting the occurrence of heterozygote advantage, rare-allele effects and/or fluctuating selection. On the contrary, no association was detected between genetic diversity and resistance to coccidia, indicating that different parasite classes are impacted by different genetic drivers. CONCLUSIONS This study provides important insights for large herbivores and wild sheep pathogen management, and in particular suggests that factors likely to impact genetic diversity and allelic frequencies, including global changes, are also expected to impact parasite resistance.
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Affiliation(s)
- Elodie Portanier
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Évolutive, 69100 Villeurbanne, France
- Office National de la Chasse et de la Faune Sauvage, Unité Ongulés Sauvages, 5 allée de Bethléem, Z.I. Mayencin, 38610 Gières, France
- Université de Lyon, VetAgro Sup, Campus Vétérinaire de Lyon, 1 Avenue Bourgelat, BP 83, 69280 Marcy l’Etoile, France
| | - Mathieu Garel
- Office National de la Chasse et de la Faune Sauvage, Unité Ongulés Sauvages, 5 allée de Bethléem, Z.I. Mayencin, 38610 Gières, France
| | - Sébastien Devillard
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Évolutive, 69100 Villeurbanne, France
| | - Daniel Maillard
- Office National de la Chasse et de la Faune Sauvage, Unité Ongulés Sauvages, 5 allée de Bethléem, Z.I. Mayencin, 38610 Gières, France
| | - Jocelyn Poissant
- Department of Ecosystem and Public Health, University of Calgary, Calgary, Canada
| | - Maxime Galan
- CBGP, INRA, CIRAD, IRD, Montpellier SupAgro, Université de Montpellier, 34980 Montferrier Sur Lez, France
| | - Slimania Benabed
- Université de Lyon, VetAgro Sup, Campus Vétérinaire de Lyon, 1 Avenue Bourgelat, BP 83, 69280 Marcy l’Etoile, France
| | - Marie-Thérèse Poirel
- Université de Lyon, VetAgro Sup, Campus Vétérinaire de Lyon, 1 Avenue Bourgelat, BP 83, 69280 Marcy l’Etoile, France
| | - Jeanne Duhayer
- Office National de la Chasse et de la Faune Sauvage, Unité Ongulés Sauvages, 5 allée de Bethléem, Z.I. Mayencin, 38610 Gières, France
| | - Christian Itty
- Office National de la Chasse et de la Faune Sauvage, Unité Ongulés Sauvages, 5 allée de Bethléem, Z.I. Mayencin, 38610 Gières, France
| | - Gilles Bourgoin
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Évolutive, 69100 Villeurbanne, France
- Université de Lyon, VetAgro Sup, Campus Vétérinaire de Lyon, 1 Avenue Bourgelat, BP 83, 69280 Marcy l’Etoile, France
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EVALUATION OF A TEST AND CULL STRATEGY FOR REDUCING PREVALENCE OF CHRONIC WASTING DISEASE IN MULE DEER ( ODOCOILEUS HEMIONUS). J Wildl Dis 2018; 54:511-519. [PMID: 29667874 DOI: 10.7589/2018-01-015] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
We evaluated a test and cull strategy for lowering chronic wasting disease (CWD) prevalence in a naturally-infected, free-ranging mule deer ( Odocoileus hemionus) herd wintering in the town of Estes Park, Colorado, US and in nearby Rocky Mountain National Park. We tested 48-68% of the estimated number of adult (≥1 yr old) deer annually for 5 yr via tonsil biopsy immunohistochemistry (IHC), collecting 1,251 samples from >700 individuals and removing IHC-positive deer. Among males, CWD prevalence during the last 3 yr of selective culling was lower (one-sided Fisher's exact test P=0.014) than in the period prior. In contrast, CWD prevalence among females before culling and after culling were equivalent ( P=0.777). Relatively higher annual testing of males (mean 77%) compared to females (mean 51%) might have contributed to differences seen in responses to management. A more intensive and sustained effort or modified spatial approach might have reduced prevalence more consistently in both sexes. Limitations of this technique in wider management application include cost and labor as well as property access and animal tolerance to repeated capture. However, elements of this approach could potentially be used to augment harvest-based disease management.
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Mejía‐Salazar MF, Waldner CL, Hwang YT, Bollinger TK. Use of environmental sites by mule deer: a proxy for relative risk of chronic wasting disease exposure and transmission. Ecosphere 2018. [DOI: 10.1002/ecs2.2055] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023] Open
Affiliation(s)
- María Fernanda Mejía‐Salazar
- Department of Veterinary Pathology University of Saskatchewan 52 Campus Drive Saskatoon Saskatchewan S7N 5B4 Canada
| | - Cheryl L. Waldner
- Department of Large Animal Clinical Sciences University of Saskatchewan 52 Campus Drive Saskatoon Saskatchewan S7N 5B4 Canada
| | - Yeen Ten Hwang
- Department of Veterinary Pathology University of Saskatchewan 52 Campus Drive Saskatoon Saskatchewan S7N 5B4 Canada
- Fish and Wildlife Branch Saskatchewan Ministry of Environment Regina Saskatchewan S4S 5W6 Canada
| | - Trent K. Bollinger
- Department of Veterinary Pathology University of Saskatchewan 52 Campus Drive Saskatoon Saskatchewan S7N 5B4 Canada
- Canadian Wildlife Health Cooperative (CWHC) 52 Campus Drive Saskatoon Saskatchewan S7N 5B4 Canada
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