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Kamali K, Nazarizadeh M, Fatemizadeh F, Salmabadi S, Hung CM, Kaboli M. Integrating phylogenetic, phylogeographic, and morphometric analyses to reveal cryptic lineages within the genus Asaccus (Reptilia: Squamata: Phyllodactylidae) in Iran. BMC ZOOL 2024; 9:12. [PMID: 38926885 PMCID: PMC11202258 DOI: 10.1186/s40850-024-00203-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Accepted: 06/18/2024] [Indexed: 06/28/2024] Open
Abstract
The Middle Eastern endemic genus Asaccus comprises Southwest Asian leaf-toed geckos. To date, this genus includes 19 species of leaf-toed geckos (seven in Arabia and 12 in the Zagros Mountains). Despite a recent study on the taxonomy and phylogeny of Asaccus species in Iran, controversies still remain surrounding the phylogeny and phylogeography of the genus. Here, we used an integrative approach to determine the phylogeny and phylogeography of Asaccus species using two mitochondrial genes (12 S and Cyt b), and one nuclear gene (c-mos). Our results uncovered 22 distinct lineages, demonstrating a significant cryptic diversity that challenges the current morphological classifications of these species. Phylogenetic analyses reinforce the monophyly of the Asaccus group, positioning A. montanus as a basal lineage, which supports a deep evolutionary divergence dating back to the Late Oligocene, approximately 27.94 million years ago. This genetic diversity also highlights the impact of historical climatic and geographical changes on species diversification. The findings advocate for an integrative approach combining both molecular and morphological data to resolve species identities accurately, thereby enhancing conservation strategies to protect these genetically distinct lineages.
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Affiliation(s)
- Kamran Kamali
- Iranian Herpetology Institute, Tehran, Iran
- Department of Environmental Science, Faculty of Natural Resources, University of Tehran, Tehran, Iran
| | - Masoud Nazarizadeh
- Institute of Parasitology, Biology Centre CAS, České Budějovice, Czech Republic
- Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic
| | - Faezeh Fatemizadeh
- Department of Environmental Science, Faculty of Natural Resources, University of Tehran, Tehran, Iran
| | | | - Chih-Ming Hung
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan.
| | - Mohammad Kaboli
- Department of Environmental Science, Faculty of Natural Resources, University of Tehran, Tehran, Iran.
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2
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Oliver PM, Donnellan SC, Gunn BF. Plio–Pleistocene vicariance across arid Australia in the ‘Spiny Knob-tailed Geckos’ (. AUST J ZOOL 2022. [DOI: 10.1071/zo22008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Across Australia’s monsoon tropics and vast arid zone isolated regions or ‘islands’ of upland or rocky habitat are home to disjunct populations of many taxa of plants and animals. Comparative analyses of lineages that occur across these habitat islands provide opportunities to understand when and how environmental change drove isolation and diversification across arid Australia. Here we present an analysis of mitochondrial genetic diversity across disjunct populations of geckos in the Nephrurus asper group. Dating analyses suggest that disjunct and genetically divergent populations spanning the northern half of Australia diverged through the Plio–Pleistocene. Based on the timing of divergence and current habitat associations we hypothesise that species in this lineage were isolated by the expansion of unsuitable arid-zone habitats from the late Pliocene onwards. Across most areas, these barriers appear to be sandy or stony deserts. However, in eastern Australia genetically divergent populations are separated by grassland on flat vertisol-dominated soils (‘blacksoils’), suggesting that these habitats also expanded during the late Pliocene aridification. Finally, we show that western Queensland populations formerly referred to N. asper are genetically divergent and diagnosable on the basis of colour pattern and, herein, recognise these populations as a distinct species. https://zoobank.org/urn:lsid:zoobank.org:pub:9508CAAA-D014-452D-A3DA-325851615FA7
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3
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Decoupling in Diversification and Body Size Rates During the Radiation of Phyllodactylus: Evidence Suggests Minor Role of Ecology in Shaping Phenotypes. Evol Biol 2022. [DOI: 10.1007/s11692-022-09575-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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4
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A new cryptic species of the Darevskia parvula group from NE Anatolia (Squamata, Lacertidae). ORG DIVERS EVOL 2022. [DOI: 10.1007/s13127-022-00540-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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5
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Tejero-Cicuéndez H, Simó-Riudalbas M, Menéndez I, Carranza S. Ecological specialization, rather than the island effect, explains morphological diversification in an ancient radiation of geckos. Proc Biol Sci 2021; 288:20211821. [PMID: 34933601 PMCID: PMC8692960 DOI: 10.1098/rspb.2021.1821] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2021] [Accepted: 11/26/2021] [Indexed: 12/24/2022] Open
Abstract
Island colonists are often assumed to experience higher levels of phenotypic diversification than continental taxa. However, empirical evidence has uncovered exceptions to this 'island effect'. Here, we tested this pattern using the geckos of the genus Pristurus from continental Arabia and Africa and the Socotra Archipelago. Using a recently published phylogeny and an extensive morphological dataset, we explore the differences in phenotypic evolution between Socotran and continental taxa. Moreover, we reconstructed ancestral habitat occupancy to examine if ecological specialization is correlated with morphological change, comparing phenotypic disparity and trait evolution between habitats. We found a heterogeneous outcome of island colonization. Namely, only one of the three colonization events resulted in a body size increase. However, in general, Socotran species do not present higher levels or rates of morphological diversification than continental groups. Instead, habitat specialization explains better the body size and shape evolution in Pristurus. Particularly, the colonization of ground habitats appears as the main driver of morphological change, producing the highest disparity and evolutionary rates. Additionally, arboreal species show very similar body size and head proportions. These results reveal a determinant role of ecological mechanisms in morphological evolution and corroborate the complexity of ecomorphological dynamics in continent-island systems.
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Affiliation(s)
- Héctor Tejero-Cicuéndez
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta 37-49, Barcelona 08003, Spain
| | - Marc Simó-Riudalbas
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta 37-49, Barcelona 08003, Spain
| | - Iris Menéndez
- Departamento de Geodinámica, Estratigrafía y Paleontología, Facultad de Ciencias Geológicas, Universidad Complutense de Madrid, C/José Antonio Novais 12, Madrid 28040, Spain
- Departamento de Cambio Medioambiental, Instituto de Geociencias (UCM, CSIC), C/Severo Ochoa 7, Madrid 28040, Spain
| | - Salvador Carranza
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta 37-49, Barcelona 08003, Spain
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6
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Candan K, Kornilios P, Ayaz D, Kumlutaş Y, GüL S, Caynak EY, Ilgaz Ç. Cryptic genetic structure within Valentin’s Lizard, Darevskia valentini (Boettger, 1892) (Squamata, Lacertidae), with implications for systematics and origins of parthenogenesis. SYST BIODIVERS 2021. [DOI: 10.1080/14772000.2021.1909171] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Kamil Candan
- Faculty of Science, Department of Biology, Dokuz Eylül University, Buca, İzmir TR-35390, Turkey
| | | | - DinÇer Ayaz
- Faculty of Science, Department of Biology, Ege University, Bornova, İzmir TR-35040, Turkey
| | - Yusuf Kumlutaş
- Faculty of Science, Department of Biology, Dokuz Eylül University, Buca, İzmir TR-35390, Turkey
- Fauna and Flora Applied and Research Center, Dokuz Eylül University, Buca, İzmir TR-35390, Turkey
| | - Serkan GüL
- Faculty of Science and Arts, Department of Biology, Recep Tayyip Erdoğan University, Rize TR-53100, Turkey
| | - Elif Yildirim Caynak
- Faculty of Science, Department of Biology, Dokuz Eylül University, Buca, İzmir TR-35390, Turkey
- Fauna and Flora Applied and Research Center, Dokuz Eylül University, Buca, İzmir TR-35390, Turkey
| | - Çetin Ilgaz
- Faculty of Science, Department of Biology, Dokuz Eylül University, Buca, İzmir TR-35390, Turkey
- Fauna and Flora Applied and Research Center, Dokuz Eylül University, Buca, İzmir TR-35390, Turkey
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7
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Tamar K, Chirio L, Shobrak M, Busais S, Carranza S. Using multilocus approach to uncover cryptic diversity within Pseudotrapelus lizards from Saudi Arabia. Saudi J Biol Sci 2019; 26:1442-1449. [PMID: 31762607 PMCID: PMC6864301 DOI: 10.1016/j.sjbs.2019.05.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2018] [Revised: 05/21/2019] [Accepted: 05/22/2019] [Indexed: 12/14/2022] Open
Abstract
The agamid Pseudotrapelus lizards inhabit the mountainous areas of the Arabian Peninsula and eastern North Africa. Currently six Pseudotrapelus species are recognised, though diagnostic morphological characters are still lacking, creating great difficulty in describing new species. Recently, two specimens of Pseudotrapelus were collected from the vicinity of Riyadh in central Saudi Arabia, an area that was not sampled in previous phylogenetic studies. In here we used both mitochondrial and nuclear data to investigate the phylogenetic position of the new samples, and assess their phylogenetic relationships with the other recognised species of Pseudotrapelus from across the distribution range of the genus. We used a multilocus approach of haplotype networks, concatenated datasets and species trees, performed mitochondrial and nuclear species delimitation analyses, and estimated divergence times. In general, our results support previous molecular studies and uncover the presence of cryptic diversity within Pseudotrapelus. The phylogenetic structure of the genus is of two major clades and within them seven distinct, delimited phylogenetic groups belonging to the six recognised species and the seventh to the individuals from Riyadh. The Riyadh specimens were distinct in all analyses performed. We suggest that the new specimens from the Riyadh area are a distinct lineage, forming a clade with their phylogenetic relatives, P. sinaitus and P. chlodnickii. The clade formed by these three species diverged during the Late Miocene around 6.4 Ma, with cladogenesis possibly facilitated by vicariance and isolation caused due to climatic fluctuations and the progression of sandy areas. Our results suggest further morphological research is necessary to revise the taxonomic status of this lineage and of the entire genus.
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Affiliation(s)
- Karin Tamar
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta 37-49, 08003 Barcelona, Spain
| | | | - Mohammed Shobrak
- Department of Biology, Faculty of Science, Taif University, Saudi Arabia.,Saudi Wildlife Authority, Prince Saud Al Faisal Research Center, Taif, Saudi Arabia
| | - Salem Busais
- Department of Biology, Aden University, Khormaksar 6235 Aden, Yemen.,Biology Department, Faculty of Science, Jazan University, Saudi Arabia
| | - Salvador Carranza
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta 37-49, 08003 Barcelona, Spain
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8
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Biogeography of Mesalina (Reptilia: Lacertidae), with special emphasis on the Mesalina adramitana group from Arabia and the Socotra Archipelago. Mol Phylogenet Evol 2019; 137:300-312. [DOI: 10.1016/j.ympev.2019.04.023] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2018] [Revised: 04/24/2019] [Accepted: 04/24/2019] [Indexed: 11/30/2022]
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9
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Tamar K, Mitsi P, SimÓ-Riudalbas M, Tejero-Cicuéndez H, Al-Sariri T, Carranza S. Systematics, biogeography, and evolution ofPristurus minimus(Squamata, Sphaerodactylidae) with the discovery of the smallest Arabian vertebrate. SYST BIODIVERS 2019. [DOI: 10.1080/14772000.2019.1614694] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Karin Tamar
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Maritim de la Barceloneta, 37–49, Barcelona, 08003, Spain
| | - Pelagia Mitsi
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Maritim de la Barceloneta, 37–49, Barcelona, 08003, Spain
| | - Marc SimÓ-Riudalbas
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Maritim de la Barceloneta, 37–49, Barcelona, 08003, Spain
| | - Héctor Tejero-Cicuéndez
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Maritim de la Barceloneta, 37–49, Barcelona, 08003, Spain
| | - Thuraya Al-Sariri
- Ministry of Environment and Climate Affairs, Thaqafah Street, 100, Muscat, Oman
| | - Salvador Carranza
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Maritim de la Barceloneta, 37–49, Barcelona, 08003, Spain
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10
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Burriel-Carranza B, Tarroso P, Els J, Gardner A, Soorae P, Mohammed AA, Tubati SRK, Eltayeb MM, Shah JN, Tejero-Cicuéndez H, Simó-Riudalbas M, Pleguezuelos JM, Fernández-Guiberteau D, Šmíd J, Carranza S. An integrative assessment of the diversity, phylogeny, distribution, and conservation of the terrestrial reptiles (Sauropsida, Squamata) of the United Arab Emirates. PLoS One 2019; 14:e0216273. [PMID: 31048886 PMCID: PMC6497385 DOI: 10.1371/journal.pone.0216273] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2019] [Accepted: 04/17/2019] [Indexed: 11/25/2022] Open
Abstract
In the present study we use an unprecedented database of 5,535 distributional records to infer the diversity, ecological preferences and spatial distribution of the 60 species of terrestrial reptiles of the United Arab Emirates (UAE), and use the 57 native species to test the effectiveness of the protected areas’ network in conserving this unique vertebrate fauna. We infer a time-calibrated phylogeny with 146 species of squamates and 15 genes including all UAE terrestrial reptile species to determine the phylogenetic diversity (PD) and evolutionary distinctiveness (ED) of the native species and to compare it with the distribution of the hotspots of native species richness. The results of this study indicate that the sampling effort is remarkable, covering 75% of the country’s territory representing nearly the entire climatic space of the UAE defined by the mean annual temperature and the total annual precipitation, as well as the multivariate climatic space defined by a principal component analysis (PCA). Species richness is highest in the northeast of the country, in a transitional area from sandy desert to the mountainous terrain of the Hajar Mountains. The highest PD of a single square cell of 10 arc-minutes grid is of 2,430 million years (my) of accumulated evolutionary history and the strong correlation between PD and species richness suggests that the raw number of species is a good surrogate to quantify the evolutionary history (i.e., PD). The species with the highest values of ED are those in families represented by only one species in the UAE. Finally, the assessment of the UAE protected areas shows that, despite their relevance in protecting the terrestrial reptiles, they do not offer adequate protection for some threatened species. Therefore, a reassessment of some of the protected areas or the creation of species specific conservation action plans are recommended in order to ensure the preservation of the unique diversity of UAE terrestrial reptiles.
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Affiliation(s)
- Bernat Burriel-Carranza
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain
| | - Pedro Tarroso
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain
- CIBIO/InBIO, Research Centre in Biodiversity and Genetic Resources, Universidade do Porto, Campus Agrário de Vairão, Rua Padre Armando Quintas, Vairão, Vila do Conde, Portugal
| | - Johannes Els
- Breeding Centre for Endangered Arabian Wildlife, Environment and Protected Areas Authority, Sharjah, United Arab Emirates
| | - Andrew Gardner
- School of Molecular Sciences, University of Western Australia, Crawley, Western Australia, Australia
| | | | | | | | - Mohamed Mustafa Eltayeb
- Natural Resource Conservation Section, Environment Department, Dubai Municipality, Dubai, United Arab Emirates
| | - Junid Nazeer Shah
- Natural Resource Conservation Section, Environment Department, Dubai Municipality, Dubai, United Arab Emirates
| | - Héctor Tejero-Cicuéndez
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain
| | - Marc Simó-Riudalbas
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain
| | | | | | - Jiří Šmíd
- Department of Zoology, National Museum, Prague, Czech Republic
- Department of Zoology, Faculty of Science, Charles University, Prague, Czech Republic
| | - Salvador Carranza
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain
- * E-mail:
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11
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Dispersal beyond geographic barriers: a contribution to the phylogeny and demographic history of Pristurus rupestris Blanford, 1874 (Squamata: Sphaerodactylidae) from southern Iran. ZOOLOGY 2019; 134:8-15. [PMID: 31146909 DOI: 10.1016/j.zool.2019.04.001] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2018] [Revised: 03/30/2019] [Accepted: 04/02/2019] [Indexed: 11/24/2022]
Abstract
Pristurus rupestris is a member of Semaphore geckos with a wide distribution range. Recently, 14 candidate species of P. rupestris rupestris have been identified in the Hajar Mountains (Arabia), yet the knowledge on the Iranian counterparts is limited. The present study elucidates the phylogenetic position of the Iranian P. rupestris and investigates the hypothesis on its historical colonization from Oman to Iran and the associated islands. Therefore, 20 Iranian specimens along with 115 individuals from Oman were examined using two mitochondrial genes including the Cytochrome b and the 12S ribosomal RNA. The molecular phylogenetic analyses revealed that the individuals collected from Iran are well nested within the candidate Species 3 of P. r. rupestris, demonstrating a single population with high gene flow. Additionally, the molecular analyses showed that the genetic diversity within the Iranian Blanford's Semaphore geckos is low and that the candidate Species 3 experienced a recent expansion approximately 17 thousand years ago (Kya). The historical demographic analyses (BSP) showed a mild increase in the effective population size between 15-20 Kya. These time estimations coincide with the Last Glacial Maximum, when the Persian Gulf was almost dry, reinforcing the hypothesis that the species might have colonized southern Iran from Oman through the Persian Gulf. In addition, we propose P. r. iranicus to be synonymized with P. r. rupestris.
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12
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An integrative study of island diversification: Insights from the endemic Haemodracon geckos of the Socotra Archipelago. Mol Phylogenet Evol 2019; 133:166-175. [DOI: 10.1016/j.ympev.2019.01.009] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2018] [Revised: 01/07/2019] [Accepted: 01/07/2019] [Indexed: 11/22/2022]
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13
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Oliver PM, Ashman LG, Bank S, Laver RJ, Pratt RC, Tedeschi LG, Moritz CC. On and off the rocks: persistence and ecological diversification in a tropical Australian lizard radiation. BMC Evol Biol 2019; 19:81. [PMID: 30894117 PMCID: PMC6427882 DOI: 10.1186/s12862-019-1408-1] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2018] [Accepted: 03/04/2019] [Indexed: 12/17/2022] Open
Abstract
Background Congruent patterns in the distribution of biodiversity between regions or habitats suggest that key factors such as climatic and topographic variation may predictably shape evolutionary processes. In a number of tropical and arid biomes, genetic analyses are revealing deeper and more localised lineage diversity in rocky ranges than surrounding habitats. Two potential drivers of localised endemism in rocky areas are refugial persistence through climatic change, or ecological diversification and specialisation. Here we examine how patterns of lineage and phenotypic diversity differ across two broad habitat types (rocky ranges and open woodlands) in a small radiation of gecko lizards in the genus Gehyra (the australis group) from the Australian Monsoonal Tropics biome. Results Using a suite of approaches for delineating evolutionarily independent lineages, we find between 26 and 41 putative evolutionary units in the australis group (versus eight species currently recognised). Rocky ranges are home to a greater number of lineages that are also relatively more restricted in distribution, while lineages in open woodland habitats are fewer, more widely distributed, and, in one case, show evidence of range expansion. We infer at least two shifts out of rocky ranges and into surrounding woodlands. Phenotypic divergence between rocky ranges specialist and more generalist taxa is detected, but no convergent evolutionary regimes linked to ecology are inferred. Conclusions In climatically unstable biomes such as savannahs, rocky ranges have functioned as zones of persistence, generators of diversity and a source of colonists for surrounding areas. Phenotypic divergence can also be linked to the use of differing habitat types, however, the extent to which ecological specialisation is a primary driver or secondary outcome of localised diversification remains uncertain. Electronic supplementary material The online version of this article (10.1186/s12862-019-1408-1) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Paul M Oliver
- Environmental Futures Research Institute, Griffith University, 170 Kessels Rd, Nathan, Queensland, 4111, Australia. .,Biodiversity and Geosciences Program, Queensland Museum, South Brisbane, Queensland, 4101, Australia. .,Division of Ecology and Evolution, Research School of Biology, and Centre for Biodiversity Analysis, The Australian National University, 46 Sullivans Creek Road, Acton, ACT, 2601, Australia.
| | - Lauren G Ashman
- Division of Ecology and Evolution, Research School of Biology, and Centre for Biodiversity Analysis, The Australian National University, 46 Sullivans Creek Road, Acton, ACT, 2601, Australia
| | - Sarah Bank
- Division of Ecology and Evolution, Research School of Biology, and Centre for Biodiversity Analysis, The Australian National University, 46 Sullivans Creek Road, Acton, ACT, 2601, Australia.,Johann-Friedrich-Blumenbach Institute for Zoology and Anthropology, University of Göttingen, Göttingen, Germany
| | - Rebecca J Laver
- Division of Ecology and Evolution, Research School of Biology, and Centre for Biodiversity Analysis, The Australian National University, 46 Sullivans Creek Road, Acton, ACT, 2601, Australia
| | - Renae C Pratt
- Division of Ecology and Evolution, Research School of Biology, and Centre for Biodiversity Analysis, The Australian National University, 46 Sullivans Creek Road, Acton, ACT, 2601, Australia
| | - Leonardo G Tedeschi
- Division of Ecology and Evolution, Research School of Biology, and Centre for Biodiversity Analysis, The Australian National University, 46 Sullivans Creek Road, Acton, ACT, 2601, Australia
| | - Craig C Moritz
- Division of Ecology and Evolution, Research School of Biology, and Centre for Biodiversity Analysis, The Australian National University, 46 Sullivans Creek Road, Acton, ACT, 2601, Australia
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14
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Tamar K, Mitsi P, Carranza S. Cryptic diversity revealed in the leaf‐toed gecko Asaccus montanus(Squamata, Phyllodactylidae) from the Hajar Mountains of Arabia. J ZOOL SYST EVOL RES 2018. [DOI: 10.1111/jzs.12258] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Karin Tamar
- Institute of Evolutionary Biology (CSIC‐Universitat Pompeu Fabra) Barcelona Spain
| | - Pelagia Mitsi
- Institute of Evolutionary Biology (CSIC‐Universitat Pompeu Fabra) Barcelona Spain
| | - Salvador Carranza
- Institute of Evolutionary Biology (CSIC‐Universitat Pompeu Fabra) Barcelona Spain
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15
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Kotsakiozi P, Jablonski D, Ilgaz Ç, Kumlutaş Y, Avcı A, Meiri S, Itescu Y, Kukushkin O, Gvoždík V, Scillitani G, Roussos SA, Jandzik D, Kasapidis P, Lymberakis P, Poulakakis N. Multilocus phylogeny and coalescent species delimitation in Kotschy's gecko, Mediodactylus kotschyi: Hidden diversity and cryptic species. Mol Phylogenet Evol 2018; 125:177-187. [DOI: 10.1016/j.ympev.2018.03.022] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2017] [Revised: 03/12/2018] [Accepted: 03/15/2018] [Indexed: 01/07/2023]
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16
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Carranza S, Xipell M, Tarroso P, Gardner A, Arnold EN, Robinson MD, Simó-Riudalbas M, Vasconcelos R, de Pous P, Amat F, Šmíd J, Sindaco R, Metallinou M, Els J, Pleguezuelos JM, Machado L, Donaire D, Martínez G, Garcia-Porta J, Mazuch T, Wilms T, Gebhart J, Aznar J, Gallego J, Zwanzig BM, Fernández-Guiberteau D, Papenfuss T, Al Saadi S, Alghafri A, Khalifa S, Al Farqani H, Bait Bilal S, Alazri IS, Al Adhoobi AS, Al Omairi ZS, Al Shariani M, Al Kiyumi A, Al Sariri T, Al Shukaili AS, Al Akhzami SN. Diversity, distribution and conservation of the terrestrial reptiles of Oman (Sauropsida, Squamata). PLoS One 2018; 13:e0190389. [PMID: 29414999 PMCID: PMC5802441 DOI: 10.1371/journal.pone.0190389] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2017] [Accepted: 12/13/2017] [Indexed: 12/14/2022] Open
Abstract
In the present work, we use an exceptional database including 5,359 records of 101 species of Oman’s terrestrial reptiles together with spatial tools to infer the spatial patterns of species richness and endemicity, to infer the habitat preference of each species and to better define conservation priorities, with especial focus on the effectiveness of the protected areas in preserving this unique arid fauna. Our results indicate that the sampling effort is not only remarkable from a taxonomic point of view, with multiple observations for most species, but also for the spatial coverage achieved. The observations are distributed almost continuously across the two-dimensional climatic space of Oman defined by the mean annual temperature and the total annual precipitation and across the Principal Component Analysis (PCA) of the multivariate climatic space and are well represented within 17 out of the 20 climatic clusters grouping 10% of the explained climatic variance defined by PC1 and PC2. Species richness is highest in the Hajar and Dhofar Mountains, two of the most biodiverse areas of the Arabian Peninsula, and endemic species richness is greatest in the Jebel Akhdar, the highest part of the Hajar Mountains. Oman’s 22 protected areas cover only 3.91% of the country, including within their limits 63.37% of terrestrial reptiles and 50% of all endemics. Our analyses show that large areas of the climatic space of Oman lie outside protected areas and that seven of the 20 climatic clusters are not protected at all. The results of the gap analysis indicate that most of the species are below the conservation target of 17% or even the less restrictive 12% of their total area within a protected area in order to be considered adequately protected. Therefore, an evaluation of the coverage of the current network of protected areas and the identification of priority protected areas for reptiles using reserve design algorithms are urgently needed. Our study also shows that more than half of the species are still pending of a definitive evaluation by the International Union for Conservation of Nature (IUCN).
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Affiliation(s)
- Salvador Carranza
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain
- * E-mail:
| | - Meritxell Xipell
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain
| | - Pedro Tarroso
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, InBio Laboratório Associado, Vairão, Portugal
| | - Andrew Gardner
- School of Molecular Sciences, University of Western Australia, Crawley, Western Australia
| | | | - Michael D. Robinson
- Department of Biology, College of Science, Sultan Qaboos University, Al-Khod Muscat, Oman
| | - Marc Simó-Riudalbas
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain
| | - Raquel Vasconcelos
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, InBio Laboratório Associado, Vairão, Portugal
| | - Philip de Pous
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain
| | - Fèlix Amat
- Àrea d’Herpetologia, Museu de Granollers–Ciències Naturals, Palaudàries, Granollers, Spain
| | - Jiří Šmíd
- Department of Zoology, National Museum, Cirkusová, Prague, Czech Republic
| | | | - Margarita Metallinou
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain
| | - Johannes Els
- Breeding Centre for Endangered Arabian Wildlife, Environment and Protected Areas Authority, Sharjah, UAE
| | | | - Luis Machado
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, InBio Laboratório Associado, Vairão, Portugal
- Departamento de Biologia, Faculdade de Ciencias da Universidade do Porto, Porto, Portugal
| | - David Donaire
- Asociación Herpetológica Fretum Gaditanum, Mar Egeo, Jerez de la Fra, Spain
| | | | - Joan Garcia-Porta
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain
| | | | | | | | | | | | | | | | - Theodore Papenfuss
- Department of Integrative Biology, Museum of Vertebrate Zoology, University of California, Berkeley, CA, United States of America
| | - Saleh Al Saadi
- Ministry of Environment and Climate Affairs, Muscat, Oman
| | - Ali Alghafri
- Ministry of Environment and Climate Affairs, Muscat, Oman
| | - Sultan Khalifa
- Ministry of Environment and Climate Affairs, Muscat, Oman
| | | | | | | | | | | | | | - Ali Al Kiyumi
- Ministry of Environment and Climate Affairs, Muscat, Oman
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Mendes J, Salvi D, Harris DJ, Els J, Carranza S. Hidden in the Arabian Mountains: Multilocus phylogeny reveals cryptic diversity in the endemicOmanosauralizards. J ZOOL SYST EVOL RES 2018. [DOI: 10.1111/jzs.12210] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- Joana Mendes
- CIBIO Research Centre in Biodiversity and Genetic Resources, InBIO, Universidade do Porto; Vairão, Vila do Conde Portugal
- Departamento de Biologia; Faculdade de Ciências; Universidade do Porto; Porto Portugal
- Institute of Evolutionay Biology (CSIC-Universitat Pompeu Fabra); Barcelona Spain
| | - Daniele Salvi
- CIBIO Research Centre in Biodiversity and Genetic Resources, InBIO, Universidade do Porto; Vairão, Vila do Conde Portugal
- Department of Health, Life and Environmental Sciences; University of L'Aquila; L'Aquila Italy
| | - David James Harris
- CIBIO Research Centre in Biodiversity and Genetic Resources, InBIO, Universidade do Porto; Vairão, Vila do Conde Portugal
- Departamento de Biologia; Faculdade de Ciências; Universidade do Porto; Porto Portugal
| | - Johannes Els
- Breeding Centre for Endangered Arabian Wildlife, Environment and Protected Areas Authority; Sharjah UAE
| | - Salvador Carranza
- Institute of Evolutionay Biology (CSIC-Universitat Pompeu Fabra); Barcelona Spain
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