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Sander K, Abel AJ, Friedline S, Sharpless W, Skerker J, Deutschbauer A, Clark DS, Arkin AP. Eliminating genes for a two-component system increases PHB productivity in Cupriavidus basilensis 4G11 under PHB suppressing, nonstress conditions. Biotechnol Bioeng 2024; 121:139-156. [PMID: 37638652 DOI: 10.1002/bit.28532] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Revised: 08/07/2023] [Accepted: 08/10/2023] [Indexed: 08/29/2023]
Abstract
Species of bacteria from the genus Cupriavidus are known, in part, for their ability to produce high amounts of poly-hydroxybutyrate (PHB) making them attractive candidates for bioplastic production. The native synthesis of PHB occurs during periods of metabolic stress, and the process regulating the initiation of PHB accumulation in these organisms is not fully understood. Screening an RB-TnSeq transposon library of Cupriavidus basilensis 4G11 allowed us to identify two genes of an apparent, uncharacterized two-component system, which when omitted from the genome enable increased PHB productivity in balanced, nonstress growth conditions. We observe average increases in PHB productivity of 56% and 41% relative to the wildtype parent strain upon deleting each gene individually from the genome. The increased PHB phenotype disappears, however, in nitrogen-free unbalanced growth conditions suggesting the phenotype is specific to fast-growing, replete, nonstress growth. Bioproduction modeling suggests this phenotype could be due to a decreased reliance on metabolic stress induced by nitrogen limitation to initiate PHB production in the mutant strains. Due to uncertainty in the two-component system's input signal and regulon, the mechanism by which these genes impart this phenotype remains unclear. Such strains may allow for the use of single-stage, continuous bioreactor systems, which are far simpler than many PHB bioproduction schemes used previously, given a similar product yield to batch systems in such a configuration. Bioproductivity modeling suggests that omitting this regulation in the cells may increase PHB productivity up to 24% relative to the wildtype organism when using single-stage continuous systems. This work expands our understanding of the regulation of PHB accumulation in Cupriavidus, in particular the initiation of this process upon transition into unbalanced growth regimes.
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Affiliation(s)
- Kyle Sander
- Center for the Utilization of Biological Engineering in Space, Berkeley, California, USA
- Department of Bioengineering, University of California, Berkeley, California, USA
| | - Anthony J Abel
- Center for the Utilization of Biological Engineering in Space, Berkeley, California, USA
- Department of Chemical & Biomolecular Engineering, University of California, Berkeley, California, USA
| | - Skyler Friedline
- Center for the Utilization of Biological Engineering in Space, Berkeley, California, USA
- Department of Bioengineering, University of California, Berkeley, California, USA
| | - William Sharpless
- Center for the Utilization of Biological Engineering in Space, Berkeley, California, USA
| | - Jeffrey Skerker
- Center for the Utilization of Biological Engineering in Space, Berkeley, California, USA
- Department of Bioengineering, University of California, Berkeley, California, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
| | - Adam Deutschbauer
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
| | - Douglas S Clark
- Center for the Utilization of Biological Engineering in Space, Berkeley, California, USA
- Department of Chemical & Biomolecular Engineering, University of California, Berkeley, California, USA
| | - Adam P Arkin
- Center for the Utilization of Biological Engineering in Space, Berkeley, California, USA
- Department of Bioengineering, University of California, Berkeley, California, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
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2
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Collas F, Dronsella BB, Kubis A, Schann K, Binder S, Arto N, Claassens NJ, Kensy F, Orsi E. Engineering the biological conversion of formate into crotonate in Cupriavidus necator. Metab Eng 2023; 79:49-65. [PMID: 37414134 DOI: 10.1016/j.ymben.2023.06.015] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Revised: 06/08/2023] [Accepted: 06/29/2023] [Indexed: 07/08/2023]
Abstract
To advance the sustainability of the biobased economy, our society needs to develop novel bioprocesses based on truly renewable resources. The C1-molecule formate is increasingly proposed as carbon and energy source for microbial fermentations, as it can be efficiently generated electrochemically from CO2 and renewable energy. Yet, its biotechnological conversion into value-added compounds has been limited to a handful of examples. In this work, we engineered the natural formatotrophic bacterium C. necator as cell factory to enable biological conversion of formate into crotonate, a platform short-chain unsaturated carboxylic acid of biotechnological relevance. First, we developed a small-scale (150-mL working volume) cultivation setup for growing C. necator in minimal medium using formate as only carbon and energy source. By using a fed-batch strategy with automatic feeding of formic acid, we could increase final biomass concentrations 15-fold compared to batch cultivations in flasks. Then, we engineered a heterologous crotonate pathway in the bacterium via a modular approach, where each pathway section was assessed using multiple candidates. The best performing modules included a malonyl-CoA bypass for increasing the thermodynamic drive towards the intermediate acetoacetyl-CoA and subsequent conversion to crotonyl-CoA through partial reverse β-oxidation. This pathway architecture was then tested for formate-based biosynthesis in our fed-batch setup, resulting in a two-fold higher titer, three-fold higher productivity, and five-fold higher yield compared to the strain not harboring the bypass. Eventually, we reached a maximum product titer of 148.0 ± 6.8 mg/L. Altogether, this work consists in a proof-of-principle integrating bioprocess and metabolic engineering approaches for the biological upgrading of formate into a value-added platform chemical.
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Affiliation(s)
| | - Beau B Dronsella
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | | | - Karin Schann
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | | | | | - Nico J Claassens
- Laboratory of Microbiology, Wageningen University, Wageningen, the Netherlands
| | | | - Enrico Orsi
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
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3
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Lim J, Choi SY, Lee JW, Lee SY, Lee H. Biohybrid CO 2 electrolysis for the direct synthesis of polyesters from CO 2. Proc Natl Acad Sci U S A 2023; 120:e2221438120. [PMID: 36972448 PMCID: PMC10083616 DOI: 10.1073/pnas.2221438120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2022] [Accepted: 02/27/2023] [Indexed: 03/29/2023] Open
Abstract
Converting anthropogenic CO2 to value-added products using renewable energy has received much attention to achieve a sustainable carbon cycle. CO2 electrolysis has been extensively investigated, but the products have been limited to some C1-3 products. Here, we report the integration of CO2 electrolysis with microbial fermentation to directly produce poly-3-hydroxybutyrate (PHB), a microbial polyester, from gaseous CO2 on a gram scale. This biohybrid system comprises electrochemical conversion of CO2 to formate on Sn catalysts deposited on a gas diffusion electrode (GDE) and subsequent conversion of formate to PHB by Cupriavidus necator cells in a fermenter. The electrolyzer and the electrolyte solution were optimized for this biohybrid system. In particular, the electrolyte solution containing formate was continuously circulated through both the CO2 electrolyzer and the fermenter, resulting in the efficient accumulation of PHB in C. necator cells, reaching a PHB content of 83% of dry cell weight and producing 1.38 g PHB using 4 cm2 Sn GDE. This biohybrid system was further modified to enable continuous PHB production operated at a steady state by adding fresh cells and removing PHB. The strategies employed for developing this biohybrid system will be useful for establishing other biohybrid systems producing chemicals and materials directly from gaseous CO2.
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Affiliation(s)
- Jinkyu Lim
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology, Daejeon34141, South Korea
| | - So Young Choi
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology, Daejeon34141, South Korea
| | - Jae Won Lee
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology, Daejeon34141, South Korea
| | - Sang Yup Lee
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology, Daejeon34141, South Korea
| | - Hyunjoo Lee
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology, Daejeon34141, South Korea
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4
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Vlaeminck E, Uitterhaegen E, Quataert K, Delmulle T, De Winter K, Soetaert WK. Industrial side streams as sustainable substrates for microbial production of poly(3-hydroxybutyrate) (PHB). World J Microbiol Biotechnol 2022; 38:238. [PMID: 36260135 PMCID: PMC9581835 DOI: 10.1007/s11274-022-03416-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Accepted: 09/13/2022] [Indexed: 11/03/2022]
Abstract
Poly(3-hydroxybutyrate) (PHB) is a microbially produced biopolymer that is emerging as a propitious alternative to petroleum-based plastics owing to its biodegradable and biocompatible properties. However, to date, the relatively high costs related to the PHB production process are hampering its widespread commercialization. Since feedstock costs add up to half of the total production costs, ample research has been focusing on the use of inexpensive industrial side streams as carbon sources. While various industrial side streams such as second-generation carbohydrates, lignocellulose, lipids, and glycerol have been extensively investigated in liquid fermentation processes, also gaseous sources, including carbon dioxide, carbon monoxide, and methane, are gaining attention as substrates for gas fermentation. In addition, recent studies have investigated two-stage processes to convert waste gases into PHB via organic acids or alcohols. In this review, a variety of different industrial side streams are discussed as more sustainable and economical carbon sources for microbial PHB production. In particular, a comprehensive overview of recent developments and remaining challenges in fermentation strategies using these feedstocks is provided, considering technical, environmental, and economic aspects to shed light on their industrial feasibility. As such, this review aims to contribute to the global shift towards a zero-waste bio-economy and more sustainable materials.
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Affiliation(s)
- Elodie Vlaeminck
- Bio Base Europe Pilot Plant (BBEPP), Rodenhuizekaai 1, Ghent, Belgium
- Centre for Industrial Biotechnology and Biocatalysis (InBio.be), Ghent University, Ghent, Belgium
| | | | - Koen Quataert
- Bio Base Europe Pilot Plant (BBEPP), Rodenhuizekaai 1, Ghent, Belgium
| | - Tom Delmulle
- Centre for Industrial Biotechnology and Biocatalysis (InBio.be), Ghent University, Ghent, Belgium
| | - Karel De Winter
- Bio Base Europe Pilot Plant (BBEPP), Rodenhuizekaai 1, Ghent, Belgium
| | - Wim K. Soetaert
- Centre for Industrial Biotechnology and Biocatalysis (InBio.be), Ghent University, Ghent, Belgium
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5
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Hydrogen Production and Storage: Analysing Integration of Photoelectrolysis, Electron Harvesting Lignocellulose, and Atmospheric Carbon Dioxide-Fixing Biosynthesis. ENERGIES 2022. [DOI: 10.3390/en15155486] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Green hydrogen from photocatalytic water-splitting and photocatalytic lignocellulosic reforming is a significant proposition for renewable energy storage in global net-zero policies and strategies. Although photocatalytic water-splitting and photocatalytic lignocellulosic reforming have been investigated, their integration is novel. Furthermore, biosynthesis can store the evolved hydrogen and fix the atmospheric carbon dioxide in a biocathode chamber. The biocathode chamber is coupled to the combined photocatalytic water-splitting and lignocellulose oxidation in an anode chamber. This integrated system of anode and biocathode mimics a (bio)electrosynthesis system. A visible solar radiation-driven novel hybrid system comprising photocatalytic water-splitting, lignocellulose oxidation, and atmospheric CO2 fixation is, thus, investigated. It must be noted that there is no technology for reducing atmospheric CO2 concentration. Thus, our novel intensified technology enables renewable and sustainable hydrogen economy and direct CO2 capture from air to confront climate change impact. The photocatalytic anode considered is CdS nanocomposites that give a low absorption onset (200 nm), high absorbance range (200–800 nm), and narrow bandgap (1.58–2.4 V). The biocathode considered is Ralstonia eutropha H16 interfaced with photocatalytic lignocellulosic oxidation and a water-splitting anode. The biocathode undergoes autotrophic metabolism fixing atmospheric CO2 and hydrogen to poly(3-hydroxybutyrate) biosynthesis. As the hydrogen evolved can be readily stored, the electron–hole pair can be separated, increasing the hydrogen evolution efficiency. Although there are many experimental studies, this study for the first time sets the maximum theoretical efficiency target from mechanistic deductions of practical insights. Compared to physical/physicochemical absorption with solvent recovery to capture CO2, the photosynthetic CO2 capture efficiency is 51%. The maximum solar-to-hydrogen generation efficiency is 33%. Lignocelluloses participate in hydrogen evolution by (1–4)-glycosidic bond decomposition, releasing accessible sugar monomers or monosaccharides forming a Cd–O–R bond with the CdS/CdOx nanocomposite surface used as a photocatalyst/semiconductor, leading to CO32− in oxidised carboxylic acid products. Lignocellulose dosing as an oxidising agent can increase the extent of water-splitting. The mechanistic analyses affirm the criticality of lignocellulose oxidation in photocatalytic hydrogen evolution. The critical conditions for success are increasing the alcohol neutralising agent’s strength, increasing the selective (ligno)cellulose dosing, broadening the hybrid nanostructure of the photocatalyst/semiconductor, enhancing the visible-light range absorbance, and increasing the solar energy utilisation efficiency.
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6
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Conners EM, Rengasamy K, Bose A. "Electroactive biofilms: how microbial electron transfer enables bioelectrochemical applications". J Ind Microbiol Biotechnol 2022; 49:6563884. [PMID: 35381088 PMCID: PMC9338886 DOI: 10.1093/jimb/kuac012] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Accepted: 03/30/2022] [Indexed: 11/22/2022]
Abstract
Microbial biofilms are ubiquitous. In marine and freshwater ecosystems, microbe–mineral interactions sustain biogeochemical cycles, while biofilms found on plants and animals can range from pathogens to commensals. Moreover, biofouling and biocorrosion represent significant challenges to industry. Bioprocessing is an opportunity to take advantage of biofilms and harness their utility as a chassis for biocommodity production. Electrochemical bioreactors have numerous potential applications, including wastewater treatment and commodity production. The literature examining these applications has demonstrated that the cell–surface interface is vital to facilitating these processes. Therefore, it is necessary to understand the state of knowledge regarding biofilms’ role in bioprocessing. This mini-review discusses bacterial biofilm formation, cell–surface redox interactions, and the role of microbial electron transfer in bioprocesses. It also highlights some current goals and challenges with respect to microbe-mediated bioprocessing and future perspectives.
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Affiliation(s)
- Eric M Conners
- Department of Biology. One Brookings Drive, Washington University in St. Louis, Missouri, 63105, USA
| | - Karthikeyan Rengasamy
- Department of Biology. One Brookings Drive, Washington University in St. Louis, Missouri, 63105, USA
| | - Arpita Bose
- Department of Biology. One Brookings Drive, Washington University in St. Louis, Missouri, 63105, USA
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7
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Pan H, Wang J, Wu H, Li Z, Lian J. Synthetic biology toolkit for engineering Cupriviadus necator H16 as a platform for CO 2 valorization. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:212. [PMID: 34736496 PMCID: PMC8570001 DOI: 10.1186/s13068-021-02063-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2021] [Accepted: 10/25/2021] [Indexed: 06/09/2023]
Abstract
BACKGROUND CO2 valorization is one of the effective methods to solve current environmental and energy problems, in which microbial electrosynthesis (MES) system has proved feasible and efficient. Cupriviadus necator (Ralstonia eutropha) H16, a model chemolithoautotroph, is a microbe of choice for CO2 conversion, especially with the ability to be employed in MES due to the presence of genes encoding [NiFe]-hydrogenases and all the Calvin-Benson-Basham cycle enzymes. The CO2 valorization strategy will make sense because the required hydrogen can be produced from renewable electricity independently of fossil fuels. MAIN BODY In this review, synthetic biology toolkit for C. necator H16, including genetic engineering vectors, heterologous gene expression elements, platform strain and genome engineering, and transformation strategies, is firstly summarized. Then, the review discusses how to apply these tools to make C. necator H16 an efficient cell factory for converting CO2 to value-added products, with the examples of alcohols, fatty acids, and terpenoids. The review is concluded with the limitation of current genetic tools and perspectives on the development of more efficient and convenient methods as well as the extensive applications of C. necator H16. CONCLUSIONS Great progress has been made on genetic engineering toolkit and synthetic biology applications of C. necator H16. Nevertheless, more efforts are expected in the near future to engineer C. necator H16 as efficient cell factories for the conversion of CO2 to value-added products.
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Affiliation(s)
- Haojie Pan
- Key Laboratory of Biomass Chemical Engineering of Ministry of Education, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Jia Wang
- Key Laboratory of Biomass Chemical Engineering of Ministry of Education, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Haoliang Wu
- Key Laboratory of Biomass Chemical Engineering of Ministry of Education, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Zhongjian Li
- Key Laboratory of Biomass Chemical Engineering of Ministry of Education, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Jiazhang Lian
- Key Laboratory of Biomass Chemical Engineering of Ministry of Education, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China.
- Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou, 310027, China.
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8
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Lee J, Park HJ, Moon M, Lee JS, Min K. Recent progress and challenges in microbial polyhydroxybutyrate (PHB) production from CO 2 as a sustainable feedstock: A state-of-the-art review. BIORESOURCE TECHNOLOGY 2021; 339:125616. [PMID: 34304096 DOI: 10.1016/j.biortech.2021.125616] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Revised: 07/14/2021] [Accepted: 07/16/2021] [Indexed: 05/05/2023]
Abstract
The recalcitrance of petroleum-based plastics causes severe environmental problems and has accelerated research into production of biodegradable polymers from inexpensive and sustainable feedstocks. Various microorganisms are capable of producing Polyhydroxybutyrate (PHB), a representative biodegradable polymer, under nutrient-limited conditions, among which CO2-utilizing microorganisms are of primary interest. Herein, we discuss recent progress on bacterial strains including proteobacteria, purple non-sulfur bacteria, and cyanobacteria in terms of CO2-containing carbon sources, PHB-production capability, and genetic modification. In addition, this review introduces recent technical approaches used to improve PHB production from CO2 such as two-stage bioprocesses and bioelectrochemical systems. Challenges and future perspectives for the development of economically feasible PHB production are also discussed. Finally, this review might provide insights into the construction of a closed-carbon-loop to cope with climate change.
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Affiliation(s)
- Jiye Lee
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research (KIER), Gwangju 61003, Republic of Korea
| | - Hyun June Park
- Department of Biotechnology, Duksung Women's University, Seoul 01369, Republic of Korea
| | - Myounghoon Moon
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research (KIER), Gwangju 61003, Republic of Korea
| | - Jin-Suk Lee
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research (KIER), Gwangju 61003, Republic of Korea
| | - Kyoungseon Min
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research (KIER), Gwangju 61003, Republic of Korea.
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9
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Utharn S, Yodsang P, Incharoensakdi A, Jantaro S. Cyanobacterium Synechocystis sp. PCC 6803 lacking adc1 gene produces higher polyhydroxybutyrate accumulation under modified nutrients of acetate supplementation and nitrogen-phosphorus starvation. ACTA ACUST UNITED AC 2021; 31:e00661. [PMID: 34386355 PMCID: PMC8342905 DOI: 10.1016/j.btre.2021.e00661] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Revised: 07/12/2021] [Accepted: 07/23/2021] [Indexed: 11/28/2022]
Abstract
Increased polyhydroxybutyrate production in cyanobacterium Synechocystis sp. PCC 6803 lacking adc1 gene (Δadc1) is first-timely reported in this study. We constructed the mutant by disrupting adc1 gene encoding arginine decarboxylase, thereby exhibiting a partial blockade of polyamine synthesis. This Δadc1 mutant had a proliferative growth and certain contents of intracellular pigments including chlorophyll a and carotenoids as similar as those of wild type (WT). Highest PHB production was certainly induced by BG11-N-P+A condition in both WT and Δadc1 mutant of about 24.9 %w/DCW at day 9 and 36.1 %w/DCW at day 7 of adaptation time, respectively. Abundant PHB granules were also visualized under both BG11-N-P and BG11-N-P+A conditions. All pha transcript amounts of Δadc1 mutant grown at 7 days-adaptation time were clearly upregulated corresponding to its PHB content under BG11-N-P+A condition. Our finding indicated that this adc1 perturbation is alternatively achieved for PHB production in Synechocystis sp. PCC 6803.
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Key Words
- ADC, arginine decarboxylase
- Adc1 mutant
- DCW, dry cell weight
- DMF, N,N-dimethylformamide
- HPLC, high pressure liquid chromatography
- Nutrient deprivation
- PCR, polymerase chain reaction
- PHAs, polyhydroxyalkanoates
- PHB, polyhydroxybutyrate
- Polyhydroxybutyrate
- Synechocystis sp. PCC6803
- TAE, Tris-acetate-ethylene diamine tetraacetic acid
- TCA, tricarboxylic acid
- h, hour(s)
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Affiliation(s)
- Suthira Utharn
- Laboratory of Cyanobacterial Biotechnology, Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand.,Program of Biotechnology, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand
| | - Panutda Yodsang
- Laboratory of Cyanobacterial Biotechnology, Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand.,King Mongkut's University of Technology Thonburi Residential College, Ratchaburi, 70150, Thailand
| | - Aran Incharoensakdi
- Laboratory of Cyanobacterial Biotechnology, Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand
| | - Saowarath Jantaro
- Laboratory of Cyanobacterial Biotechnology, Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand
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10
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Chatzipanagiotou KR, Soekhoe V, Jourdin L, Buisman CJN, Bitter JH, Strik DPBTB. Catalytic Cooperation between a Copper Oxide Electrocatalyst and a Microbial Community for Microbial Electrosynthesis. Chempluschem 2021; 86:763-777. [PMID: 33973736 DOI: 10.1002/cplu.202100119] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2021] [Revised: 04/26/2021] [Indexed: 11/06/2022]
Abstract
Electrocatalytic metals and microorganisms can be combined for CO2 conversion in microbial electrosynthesis (MES). However, a systematic investigation on the nature of interactions between metals and MES is still lacking. To investigate this nature, we integrated a copper electrocatalyst, converting CO2 to formate, with microorganisms, converting CO2 to acetate. A co-catalytic (i. e. metabolic) relationship was evident, as up to 140 mg L-1 of formate was produced solely by copper oxide, while formate was also evidently produced by copper and consumed by microorganisms producing acetate. Due to non-metabolic interactions, current density decreased by over 4 times, though acetate yield increased by 3.3 times. Despite the antimicrobial role of copper, biofilm formation was possible on a pure copper surface. Overall, we show for the first time that a CO2 -reducing copper electrocatalyst can be combined with MES under biological conditions, resulting in metabolic and non-metabolic interactions.
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Affiliation(s)
- Konstantina-Roxani Chatzipanagiotou
- Biobased Chemistry and Technology, Wageningen University & Research, Bornse Weilanden 9, 6708 WG, Wageningen, The Netherlands.,Environmental Technology, Wageningen University & Research, Bornse Weilanden 9, 6708 WG, Wageningen, The Netherlands
| | - Virangni Soekhoe
- Biobased Chemistry and Technology, Wageningen University & Research, Bornse Weilanden 9, 6708 WG, Wageningen, The Netherlands.,Environmental Technology, Wageningen University & Research, Bornse Weilanden 9, 6708 WG, Wageningen, The Netherlands
| | - Ludovic Jourdin
- Environmental Technology, Wageningen University & Research, Bornse Weilanden 9, 6708 WG, Wageningen, The Netherlands.,Currently at Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629 HZ, Delft, The Netherlands
| | - Cees J N Buisman
- Environmental Technology, Wageningen University & Research, Bornse Weilanden 9, 6708 WG, Wageningen, The Netherlands
| | - J Harry Bitter
- Biobased Chemistry and Technology, Wageningen University & Research, Bornse Weilanden 9, 6708 WG, Wageningen, The Netherlands
| | - David P B T B Strik
- Environmental Technology, Wageningen University & Research, Bornse Weilanden 9, 6708 WG, Wageningen, The Netherlands
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11
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Grant NA, Abdel Magid A, Franklin J, Dufour Y, Lenski RE. Changes in Cell Size and Shape during 50,000 Generations of Experimental Evolution with Escherichia coli. J Bacteriol 2021; 203:e00469-20. [PMID: 33649147 PMCID: PMC8088598 DOI: 10.1128/jb.00469-20] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2020] [Accepted: 02/18/2021] [Indexed: 02/07/2023] Open
Abstract
Bacteria adopt a wide variety of sizes and shapes, with many species exhibiting stereotypical morphologies. How morphology changes, and over what timescales, is less clear. Previous work examining cell morphology in an experiment with Escherichia coli showed that populations evolved larger cells and, in some cases, cells that were less rod-like. That experiment has now run for over two more decades. Meanwhile, genome sequence data are available for these populations, and new computational methods enable high-throughput microscopic analyses. In this study, we measured stationary-phase cell volumes for the ancestor and 12 populations at 2,000, 10,000, and 50,000 generations, including measurements during exponential growth at the last time point. We measured the distribution of cell volumes for each sample using a Coulter counter and microscopy, the latter of which also provided data on cell shape. Our data confirm the trend toward larger cells while also revealing substantial variation in size and shape across replicate populations. Most populations first evolved wider cells but later reverted to the ancestral length-to-width ratio. All but one population evolved mutations in rod shape maintenance genes. We also observed many ghost-like cells in the only population that evolved the novel ability to grow on citrate, supporting the hypothesis that this lineage struggles with maintaining balanced growth. Lastly, we show that cell size and fitness remain correlated across 50,000 generations. Our results suggest that larger cells are beneficial in the experimental environment, while the reversion toward ancestral length-to-width ratios suggests partial compensation for the less favorable surface area-to-volume ratios of the evolved cells.IMPORTANCE Bacteria exhibit great morphological diversity, yet we have only a limited understanding of how their cell sizes and shapes evolve and of how these features affect organismal fitness. This knowledge gap reflects, in part, the paucity of the fossil record for bacteria. In this study, we revived and analyzed samples extending over 50,000 generations from 12 populations of experimentally evolving Escherichia coli to investigate the relation between cell size, shape, and fitness. Using this "frozen fossil record," we show that all 12 populations evolved larger cells concomitant with increased fitness, with substantial heterogeneity in cell size and shape across the replicate lines. Our work demonstrates that cell morphology can readily evolve and diversify, even among populations living in identical environments.
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Affiliation(s)
- Nkrumah A Grant
- Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA
- BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, Michigan, USA
- Ecology, Evolutionary Biology, and Behavior Program, Michigan State University, East Lansing, Michigan, USA
| | - Ali Abdel Magid
- BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, Michigan, USA
| | - Joshua Franklin
- Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA
- BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, Michigan, USA
| | - Yann Dufour
- Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA
- BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, Michigan, USA
| | - Richard E Lenski
- Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA
- BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, Michigan, USA
- Ecology, Evolutionary Biology, and Behavior Program, Michigan State University, East Lansing, Michigan, USA
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12
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Guo S, Asset T, Atanassov P. Catalytic Hybrid Electrocatalytic/Biocatalytic Cascades for Carbon Dioxide Reduction and Valorization. ACS Catal 2021. [DOI: 10.1021/acscatal.0c04862] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Shengyuan Guo
- Department of Chemical and Biomolecular Engineering, National Fuel Cell Research Center, University of California Irvine, Irvine, California 92697, United States
| | - Tristan Asset
- Department of Chemical and Biomolecular Engineering, National Fuel Cell Research Center, University of California Irvine, Irvine, California 92697, United States
| | - Plamen Atanassov
- Department of Chemical and Biomolecular Engineering, National Fuel Cell Research Center, University of California Irvine, Irvine, California 92697, United States
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13
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Xu M, Tremblay PL, Ding R, Xiao J, Wang J, Kang Y, Zhang T. Photo-augmented PHB production from CO 2 or fructose by Cupriavidus necator and shape-optimized CdS nanorods. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 753:142050. [PMID: 32898811 DOI: 10.1016/j.scitotenv.2020.142050] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Revised: 08/27/2020] [Accepted: 08/27/2020] [Indexed: 06/11/2023]
Abstract
Particulate photocatalysts developed for the solar energy-driven reduction of the greenhouse gas CO2 have a small product range and low specificity. Hybrid photosynthesis expands the number of products with photocatalysts harvesting sunlight and transferring charges to microbes harboring versatile metabolisms for bioproduction. Besides CO2, abiotic photocatalysts have been employed to increase microbial production yields of reduced compounds from organic carbon substrates. Most single-reactor hybrid photosynthesis systems comprise CdS assembled in situ by microbial activity. This approach limits optimization of the morphology, crystal structure, and crystallinity of CdS for higher performance, which is usually done via synthesis methods incompatible with life. Here, shape and activity optimized CdS nanorods were hydrothermally produced and subsequently applied to Cupriavidus necator for the heterotrophic and autotrophic production of the bioplastic polyhydroxybutyrate (PHB). C. necator with CdS NR under light produced 1.5 times more PHB when compared to the same bacterium with suboptimal commercially-available CdS. Illuminated C. necator with CdS NR synthesized 1.41 g PHB from fructose over 120 h and 28 mg PHB from CO2 over 48 h. Interestingly, the beneficial effect of CdS NR was specific to C. necator as the metabolism of other microbes often employed for bioproduction including yeast and bacteria was negatively impacted. These results demonstrate that hybrid photosynthesis is more productive when the photocatalyst characteristics are optimized via a separated synthesis process prior to being coupled with microbes. Furthermore, bioproduction improvement by CdS-based photocatalyst requires specific microbial species highlighting the importance of screening efforts for the development of performant hybrid photosynthesis.
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Affiliation(s)
- Mengying Xu
- State Key Laboratory of Silicate Materials for Architectures, Wuhan University of Technology, Wuhan 430070, PR China; School of Chemistry, Chemical Engineering, and Life Science, Wuhan University of Technology, Wuhan 430070, PR China; School of Materials Science and Engineering, Wuhan University of Technology, Wuhan 430070, PR China
| | - Pier-Luc Tremblay
- State Key Laboratory of Silicate Materials for Architectures, Wuhan University of Technology, Wuhan 430070, PR China; School of Chemistry, Chemical Engineering, and Life Science, Wuhan University of Technology, Wuhan 430070, PR China
| | - Ran Ding
- State Key Laboratory of Silicate Materials for Architectures, Wuhan University of Technology, Wuhan 430070, PR China; School of Chemistry, Chemical Engineering, and Life Science, Wuhan University of Technology, Wuhan 430070, PR China
| | - Jianxun Xiao
- State Key Laboratory of Silicate Materials for Architectures, Wuhan University of Technology, Wuhan 430070, PR China; School of Chemistry, Chemical Engineering, and Life Science, Wuhan University of Technology, Wuhan 430070, PR China; School of Materials Science and Engineering, Wuhan University of Technology, Wuhan 430070, PR China
| | - Junting Wang
- State Key Laboratory of Silicate Materials for Architectures, Wuhan University of Technology, Wuhan 430070, PR China; School of Chemistry, Chemical Engineering, and Life Science, Wuhan University of Technology, Wuhan 430070, PR China; School of Materials Science and Engineering, Wuhan University of Technology, Wuhan 430070, PR China
| | - Yu Kang
- State Key Laboratory of Silicate Materials for Architectures, Wuhan University of Technology, Wuhan 430070, PR China; School of Chemistry, Chemical Engineering, and Life Science, Wuhan University of Technology, Wuhan 430070, PR China; School of Materials Science and Engineering, Wuhan University of Technology, Wuhan 430070, PR China
| | - Tian Zhang
- State Key Laboratory of Silicate Materials for Architectures, Wuhan University of Technology, Wuhan 430070, PR China; School of Chemistry, Chemical Engineering, and Life Science, Wuhan University of Technology, Wuhan 430070, PR China; School of Materials Science and Engineering, Wuhan University of Technology, Wuhan 430070, PR China.
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14
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Hegner R, Neubert K, Kroner C, Holtmann D, Harnisch F. Coupled Electrochemical and Microbial Catalysis for the Production of Polymer Bricks. CHEMSUSCHEM 2020; 13:5295-5300. [PMID: 32658366 PMCID: PMC7590143 DOI: 10.1002/cssc.202001272] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Revised: 06/29/2020] [Indexed: 06/11/2023]
Abstract
Power-to-X technologies have the potential to pave the way towards a future resource-secure bioeconomy as they enable the exploitation of renewable resources and CO2 . Herein, the coupled electrocatalytic and microbial catalysis of the C5 -polymer precursors mesaconate and 2S-methylsuccinate from CO2 and electric energy by in situ coupling electrochemical and microbial catalysis at 1 L-scale was developed. In the first phase, 6.1±2.5 mm formate was produced by electrochemical CO2 reduction. In the second phase, formate served as the substrate for microbial catalysis by an engineered strain of Methylobacterium extorquens AM-1 producing 7±2 μm and 10±5 μm of mesaconate and 2S-methylsuccinate, respectively. The proof of concept showed an overall conversion efficiency of 0.2 % being 0.4 % of the theoretical maximum.
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Affiliation(s)
- Richard Hegner
- Helmholtz Center for Environmental Research GmbH – UFZDepartment of Environmental MicrobiologyPermoserstraße 1504318LeipzigGermany
| | - Katharina Neubert
- Helmholtz Center for Environmental Research GmbH – UFZDepartment of Environmental MicrobiologyPermoserstraße 1504318LeipzigGermany
| | - Cora Kroner
- DECHEMA Research InstituteIndustrial BiotechnologyTheodor-Heuss-Allee 2560486Frankfurt am MainGermany
| | - Dirk Holtmann
- DECHEMA Research InstituteIndustrial BiotechnologyTheodor-Heuss-Allee 2560486Frankfurt am MainGermany
- Technische Hochschule MittelhessenInstitute of Bioprocess Engineering and Pharmaceutical TechnologyWiesenstraße 1435390GießenGermany
| | - Falk Harnisch
- Helmholtz Center for Environmental Research GmbH – UFZDepartment of Environmental MicrobiologyPermoserstraße 1504318LeipzigGermany
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15
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Stöckl M, Harms S, Dinges I, Dimitrova S, Holtmann D. From CO 2 to Bioplastic - Coupling the Electrochemical CO 2 Reduction with a Microbial Product Generation by Drop-in Electrolysis. CHEMSUSCHEM 2020; 13:4086-4093. [PMID: 32677318 PMCID: PMC7496250 DOI: 10.1002/cssc.202001235] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Revised: 07/01/2020] [Indexed: 05/19/2023]
Abstract
CO2 has been electrochemically reduced to the intermediate formate, which was subsequently used as sole substrate for the production of the polymer polyhydroxybutyrate (PHB) by the microorganism Cupriavidus necator. Faradaic efficiencies (FE) up to 54 % have been reached with Sn-based gas-diffusion electrodes in physiological electrolyte. The formate containing electrolyte can be used directly as drop-in solution in the following biological polymer production by resting cells. 56 mg PHB L-1 and a ratio of 34 % PHB per cell dry weight were achieved. The calculated overall FE for the process was as high as 4 %. The direct use of the electrolyte as drop-in media in the bioconversion enables simplified processes with a minimum of intermediate purification effort. Thus, an optimal coupling between electrochemical and biotechnological processes can be realized.
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Affiliation(s)
- Markus Stöckl
- Electrochemistry, Industrial BiotechnologyDECHEMA Research InstituteTheodor-Heuss-Allee 2560486Frankfurt am MainGermany
| | - Svenja Harms
- Electrochemistry, Industrial BiotechnologyDECHEMA Research InstituteTheodor-Heuss-Allee 2560486Frankfurt am MainGermany
| | - Ida Dinges
- Electrochemistry, Industrial BiotechnologyDECHEMA Research InstituteTheodor-Heuss-Allee 2560486Frankfurt am MainGermany
- Institute for Anorganic and Analytic ChemistryGoethe-Universität Frankfurt am MainMax-von-Laue-Straße 760438Frankfurt am MainGermany
| | - Steliyana Dimitrova
- Electrochemistry, Industrial BiotechnologyDECHEMA Research InstituteTheodor-Heuss-Allee 2560486Frankfurt am MainGermany
| | - Dirk Holtmann
- Electrochemistry, Industrial BiotechnologyDECHEMA Research InstituteTheodor-Heuss-Allee 2560486Frankfurt am MainGermany
- Institute of Bioprocess Engineering and Pharmaceutical TechnologyUniversity of Applied Sciences MittelhessenWiesenstrasse 1435390GiessenGermany
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16
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Sabotič J, Brzin J, Erjavec J, Dreo T, Tušek Žnidarič M, Ravnikar M, Kos J. L-Amino Acid Oxidases From Mushrooms Show Antibacterial Activity Against the Phytopathogen Ralstonia solanacearum. Front Microbiol 2020; 11:977. [PMID: 32508788 PMCID: PMC7248570 DOI: 10.3389/fmicb.2020.00977] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Accepted: 04/23/2020] [Indexed: 11/13/2022] Open
Abstract
Ralstonia solanaceraum is the quarantine plant pathogenic bacterium that causes bacterial wilt in over 200 host plants, which include economically important crops such as potato, tomato, tobacco, banana, and ginger. Alternative biological methods of disease control that can be used in integrated pest management are extensively studied. In search of new proteins with antibacterial activity against R. solanacearum, we identified L-amino acid oxidases (LAOs) from fruiting bodies of Amanita phalloides (ApLAO) and Infundibulicybe geotropa (CgLAO). We describe an optimized isolation procedure for their biochemical characterization, and show that they are dimeric proteins with estimated monomer molecular masses of 72 and 66 kDa, respectively, with isoelectric point of pH 6.5. They have broad substrate specificities for hydrophobic and charged amino acids, with highest Km for L-Leu, and broad pH optima at pH 5 and pH 6, respectively. An enzyme with similar properties is also characterized from the mycelia of I. geotropa (CgmycLAO). Fractionated aqueous extracts of 15 species of mushrooms show that LAO activity against L-Leu correlates with antibacterial activity. We confirm that the LAO activities mediate the antibacterial actions of ApLAO, CgLAO, and CgmycLAO. Their antibacterial activities are greater against Gram-negative versus Gram-positive bacteria, with inhibition of growth rate, prolongation of lag-phase, and decreased endpoint biomass. In Gram-positive bacteria, they mainly prolong the lag phase. These in vitro antibacterial activities of CgLAO and CgmycLAO are confirmed in vivo in tomato plants, while ApLAO has no effect on disease progression in planta. Transmission electron microscopy shows morphological changes of R. solanacearum upon LAO treatments. Finally, broad specificity of the antibacterial activities of these purified LAOs were seen for in vitro screening against 14 phytopathogenic bacteria. Therefore, these fungal LAOs show great potential as new biological phytoprotective agents and show the fruiting bodies of higher fungi to be a valuable source of antimicrobials with unique features.
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Affiliation(s)
- Jerica Sabotič
- Department of Biotechnology, Jožef Stefan Institute, Ljubljana, Slovenia
| | - Jože Brzin
- Department of Biotechnology, Jožef Stefan Institute, Ljubljana, Slovenia
| | - Jana Erjavec
- Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia
| | - Tanja Dreo
- Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia
| | - Magda Tušek Žnidarič
- Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia
| | - Maja Ravnikar
- Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia
| | - Janko Kos
- Department of Biotechnology, Jožef Stefan Institute, Ljubljana, Slovenia
- Faculty of Pharmacy, University of Ljubljana, Ljubljana, Slovenia
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17
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Sundararaghavan A, Mukherjee A, Sahoo S, Suraishkumar GK. Mechanism of the oxidative stress‐mediated increase in lipid accumulation by the bacterium,R. opacusPD630: Experimental analysis and genome‐scale metabolic modeling. Biotechnol Bioeng 2020; 117:1779-1788. [DOI: 10.1002/bit.27330] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2019] [Revised: 02/22/2020] [Accepted: 03/09/2020] [Indexed: 12/13/2022]
Affiliation(s)
- Archanaa Sundararaghavan
- Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences buildingIndian Institute of Technology Madras Chennai India
| | | | - Swagatika Sahoo
- Department of Chemical Engineering and Initiative for Biological Systems EngineeringIndian Institute of Technology Madras Chennai India
| | - G. K. Suraishkumar
- Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences buildingIndian Institute of Technology Madras Chennai India
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18
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Silvestri D, Wacławek S, K. Ramakrishnan R, Venkateshaiah A, Krawczyk K, Padil VVT, Sobel B, Černík M. The Use of a Biopolymer Conjugate for an Eco-Friendly One-Pot Synthesis of Palladium-Platinum Alloys. Polymers (Basel) 2019; 11:polym11121948. [PMID: 31783572 PMCID: PMC6960498 DOI: 10.3390/polym11121948] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Revised: 11/23/2019] [Accepted: 11/25/2019] [Indexed: 11/23/2022] Open
Abstract
Raising health and environmental concerns over the nanoparticles synthesized from hazardous chemicals have urged researchers to focus on safer, environmentally friendlier and cheaper alternatives as well as prompted the development of green synthesis. Apart from many advantages, green synthesis is often not selective enough (among other issues) to create shape-specific nanoparticle structures. Herein, we have used a biopolymer conjugate and Pd and Pt precursors to prepare sustainable bimetallic nanoparticles with various morphology types. The nanoparticles were synthesized by a novel green approach using a bio-conjugate of chitosan and polyhydroxybutyrate (Cs-PHB). The bio-conjugate plays the simultaneous roles of a reducing and a capping agent, which was confirmed by attenuated total reflection Fourier transform infrared spectroscopy (ATR-FTIR) and energy dispersive X-ray spectrometry (EDS) analysis, proving the presence of a Cs-PHB layer on the surface of the prepared nanoparticles. The EDS profile also revealed the elemental structure of these nanoparticles and confirmed the formation of a Pd/Pt alloy. TEM morphological analysis showed the formation of star-like, octahedron or decahedron Pd/Pt nanoparticles, depending on the synthesis conditions. The bimetallic Pd/Pt nanoparticles synthesized with various Pd/Pt molar ratios were successfully applied for the catalytic reduction of 4-nitrophenol to 4-aminophenol by borohydride. The calculated κc values (ratio of kapp to the concentration of the catalyst) revealed that the decahedron nanoparticles (size of 15 ± 4 nm), synthesized at the molar ratio of 2:1 (Pd/Pt), temperature of 130 °C, 10 g/L of Cs-PHB conjugate and time of 30 min, exhibited excellent catalytic activity compared to other bimetallic nanoparticles reported in the literature.
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Affiliation(s)
- Daniele Silvestri
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, 46117 Liberec, Czech Republic; (D.S.); (R.K.R.); (A.V.); (K.K.); (V.V.T.P.)
| | - Stanisław Wacławek
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, 46117 Liberec, Czech Republic; (D.S.); (R.K.R.); (A.V.); (K.K.); (V.V.T.P.)
- Correspondence: (S.W.); (M.Č.)
| | - Rohith K. Ramakrishnan
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, 46117 Liberec, Czech Republic; (D.S.); (R.K.R.); (A.V.); (K.K.); (V.V.T.P.)
| | - Abhilash Venkateshaiah
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, 46117 Liberec, Czech Republic; (D.S.); (R.K.R.); (A.V.); (K.K.); (V.V.T.P.)
| | - Kamil Krawczyk
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, 46117 Liberec, Czech Republic; (D.S.); (R.K.R.); (A.V.); (K.K.); (V.V.T.P.)
| | - Vinod V. T. Padil
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, 46117 Liberec, Czech Republic; (D.S.); (R.K.R.); (A.V.); (K.K.); (V.V.T.P.)
| | - Bartłomiej Sobel
- Institute of Engineering Materials and Biomaterials, Faculty of Mechanical Engineering, Silesian University of Technology, 44–100 Gliwice, Poland;
| | - Miroslav Černík
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, 46117 Liberec, Czech Republic; (D.S.); (R.K.R.); (A.V.); (K.K.); (V.V.T.P.)
- Correspondence: (S.W.); (M.Č.)
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19
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Renewable methanol and formate as microbial feedstocks. Curr Opin Biotechnol 2019; 62:168-180. [PMID: 31733545 DOI: 10.1016/j.copbio.2019.10.002] [Citation(s) in RCA: 148] [Impact Index Per Article: 24.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Revised: 09/23/2019] [Accepted: 10/01/2019] [Indexed: 12/20/2022]
Abstract
Methanol and formate are attractive microbial feedstocks as they can be sustainably produced from CO2 and renewable energy, are completely miscible, and are easy to store and transport. Here, we provide a biochemical perspective on microbial growth and bioproduction using these compounds. We show that anaerobic growth of acetogens on methanol and formate is more efficient than on H2/CO2 or CO. We analyze the aerobic C1 assimilation pathways and suggest that new-to-nature routes could outperform their natural counterparts. We further discuss practical bioprocessing aspects related to growth on methanol and formate, including feedstock toxicity. While challenges in realizing sustainable production from methanol and formate still exist, the utilization of these feedstocks paves the way towards a truly circular carbon economy.
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20
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Novackova I, Kucera D, Porizka J, Pernicova I, Sedlacek P, Koller M, Kovalcik A, Obruca S. Adaptation of Cupriavidus necator to levulinic acid for enhanced production of P(3HB-co-3HV) copolyesters. Biochem Eng J 2019. [DOI: 10.1016/j.bej.2019.107350] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
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21
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Banu JR, Kumar MD, Gunasekaran M, Kumar G. Biopolymer production in bio electrochemical system: Literature survey. ACTA ACUST UNITED AC 2019. [DOI: 10.1016/j.biteb.2019.100283] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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Switching from petro-plastics to microbial polyhydroxyalkanoates (PHA): the biotechnological escape route of choice out of the plastic predicament? EUROBIOTECH JOURNAL 2019. [DOI: 10.2478/ebtj-2019-0004] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Abstract
The benefit of biodegradable “green plastics” over established synthetic plastics from petro-chemistry, namely their complete degradation and safe disposal, makes them attractive for use in various fields, including agriculture, food packaging, and the biomedical and pharmaceutical sector. In this context, microbial polyhydroxyalkanoates (PHA) are auspicious biodegradable plastic-like polyesters that are considered to exert less environmental burden if compared to polymers derived from fossil resources.
The question of environmental and economic superiority of bio-plastics has inspired innumerable scientists during the last decades. As a matter of fact, bio-plastics like PHA have inherent economic drawbacks compared to plastics from fossil resources; they typically have higher raw material costs, and the processes are of lower productivity and are often still in the infancy of their technical development. This explains that it is no trivial task to get down the advantage of fossil-based competitors on the plastic market. Therefore, the market success of biopolymers like PHA requires R&D progress at all stages of the production chain in order to compensate for this disadvantage, especially as long as fossil resources are still available at an ecologically unjustifiable price as it does today.
Ecological performance is, although a logical argument for biopolymers in general, not sufficient to make industry and the society switch from established plastics to bio-alternatives. On the one hand, the review highlights that there’s indeed an urgent necessity to switch to such alternatives; on the other hand, it demonstrates the individual stages of the production chain, which need to be addressed to make PHA competitive in economic, environmental, ethical, and performance-related terms. In addition, it is demonstrated how new, smart PHA-based materials can be designed, which meet the customer’s expectations when applied, e.g., in the biomedical or food packaging sector.
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23
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Holtmann D, Harnisch F. Electrification of Biotechnology: Quo Vadis? ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2018; 167:395-411. [PMID: 30267102 DOI: 10.1007/10_2018_75] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Electrobiotechnology has come a long way and has gained much interest among researchers all over the world. In the previous chapters of this book, an abundance of successful developments of lab-scale electrobiosynthesis and their underlying fundamentals are described. Thereby the individual needs and lines of research are highlighted. In this final chapter we will try to shed light on the overall performance of electrobiosynthetic processes with regard to their technological maturity, as well as the potential ecological and economic incentives for their industrial implementation.The evaluation of technical maturity, in particular, clearly demonstrates that electrobiosynthesis is still in its infancy. Bridging the "valley of death" between promising lab-scale results and first industrial applications as a market opener can only be achieved by the joint efforts of researchers from different disciplines in academia and industry, as well as by public funding and venture capital.Unfortunately, among other factors, the low degree of technical maturity hampers ecological evaluation, which so far has been limited to a small number of complete life cycle assessments. Therefore, we suggest using simplified evaluation tools (e.g., the environmental E-factor) to at least acquire clues about different parameters that influence the ecological impact. Ultimately, money makes the world go round and, hence, economic aspects will determine whether or not electrobiotechnological processes are implemented in industry. The existing examples show that different production routes based on electrobiosynthesis can become economically feasible.
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Affiliation(s)
- Dirk Holtmann
- DECHEMA-Forschungsinstitut, Industrial Biotechnology, Frankfurt am Main, Germany.
| | - Falk Harnisch
- Department of Environmental Microbiology, Helmholtz-Centre for Environmental Research, Leipzig, Germany.
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