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Chacón CF, Parachú Marcó MV, Poletta GL, Siroski PA. Lipid metabolism in crocodilians: A field with promising applications in the field of ecotoxicology. ENVIRONMENTAL RESEARCH 2024; 252:119017. [PMID: 38704009 DOI: 10.1016/j.envres.2024.119017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Revised: 04/22/2024] [Accepted: 04/23/2024] [Indexed: 05/06/2024]
Abstract
In the last years, lipid physiology has become an important research target for systems biology applied to the field of ecotoxicology. Lipids are not only essential components of biological membranes, but also participate in extra and intracellular signaling processes and as signal transducers and amplifiers of regulatory cascades. Particularly in sauropsids, lipids are the main source of energy for reproduction, growth, and embryonic development. In nature, organisms are exposed to different stressors, such as parasites, diseases and environmental contaminants, which interact with lipid signaling and metabolic pathways, disrupting lipid homeostasis. The system biology approach applied to ecotoxicological studies is crucial to evaluate metabolic regulation under environmental stress produced by xenobiotics. In this review, we cover information of molecular mechanisms that contribute to lipid metabolism homeostasis in sauropsids, specifically in crocodilian species. We focus on the role of lipid metabolism as a powerful source of energy and its importance during oocyte maturation, which has been increasingly recognized in many species, but information is still scarce in crocodiles. Finally, we highlight priorities for future research on the influence of environmental stressors on lipid metabolism, their potential effect on the reproductive system and thus on the offspring, and their implications on crocodilians conservation.
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Affiliation(s)
- C F Chacón
- Laboratorio de Ecología Molecular Aplicada (LEMA), Instituto de Ciencias Veterinarias del Litoral- Consejo Nacional de Investigaciones Científicas y Técnicas (ICiVet Litoral-CONICET/UNL), Av. Aristóbulo del Valle 8700, 3000, Santa Fe, Argentina; Proyecto Yacaré (MAyCC, Gob. de Santa Fe), Av. Aristóbulo del Valle 8700, 3000, Santa Fe, Argentina.
| | - M V Parachú Marcó
- Laboratorio de Ecología Molecular Aplicada (LEMA), Instituto de Ciencias Veterinarias del Litoral- Consejo Nacional de Investigaciones Científicas y Técnicas (ICiVet Litoral-CONICET/UNL), Av. Aristóbulo del Valle 8700, 3000, Santa Fe, Argentina; Proyecto Yacaré (MAyCC, Gob. de Santa Fe), Av. Aristóbulo del Valle 8700, 3000, Santa Fe, Argentina
| | - G L Poletta
- Laboratorio de Ecología Molecular Aplicada (LEMA), Instituto de Ciencias Veterinarias del Litoral- Consejo Nacional de Investigaciones Científicas y Técnicas (ICiVet Litoral-CONICET/UNL), Av. Aristóbulo del Valle 8700, 3000, Santa Fe, Argentina; Toxicología, Farmacología y Bioquímica Legal, FBCB-UNL, CONICET, Ciudad Universitaria, Paraje El Pozo S/N, 3000, Santa Fe, Argentina
| | - P A Siroski
- Laboratorio de Ecología Molecular Aplicada (LEMA), Instituto de Ciencias Veterinarias del Litoral- Consejo Nacional de Investigaciones Científicas y Técnicas (ICiVet Litoral-CONICET/UNL), Av. Aristóbulo del Valle 8700, 3000, Santa Fe, Argentina; Proyecto Yacaré (MAyCC, Gob. de Santa Fe), Av. Aristóbulo del Valle 8700, 3000, Santa Fe, Argentina
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Sumanu VO, Naidoo V, Oosthuizen MC, Chamunorwa JP. Adverse effects of heat stress during summer on broiler chickens production and antioxidant mitigating effects. INTERNATIONAL JOURNAL OF BIOMETEOROLOGY 2022; 66:2379-2393. [PMID: 36169706 DOI: 10.1007/s00484-022-02372-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Revised: 08/22/2022] [Accepted: 09/19/2022] [Indexed: 06/16/2023]
Abstract
Broiler chicken meat is a good source of protein consumed universally, and is one of the most commonly farmed species in world. In addition to providing food, poultry non-edible byproducts also have value. A major advantage of broiler chicken production is their short production cycle, which results in a greater rate of production in comparison to other species. However, as with any production system, there are constraints in broiler production with one of the most pressing being energy requirements to keep the birds warm as chicks and cool later in the growth cycle, as a result of the cost needing mechanical heating and cooling. While this is feasible in more advanced economies, this is not readily affordable in developing economies. As a result, farmers rely on natural ventilation to cool the rearing houses, which generally becoming excessively warm with the resultant heat stress on the birds. Since little can be done without resorting to mechanical ventilation and cooling, exploring the use of other means to reduce heat stress is needed. For this review, we cover the various factors that induce heat stress, the physiological and behavioral responses of broiler chickens to heat stress. We also look at mitigating the adverse effect of heat stress through the use of antioxidants which possess either an anti-stress and/or antioxidant effects.
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Affiliation(s)
- V O Sumanu
- Department of Anatomy and Physiology, Faculty of Veterinary Science, University of Pretoria, Onderstepoort, South Africa.
| | - V Naidoo
- Department of Paraclinical Sciences, Faculty of Veterinary Science, University of Pretoria, Onderstepoort, South Africa
| | - M C Oosthuizen
- Department of Veterinary Tropical Diseases, Faculty of Veterinary Science, University of Pretoria, Onderstepoort, South Africa
| | - J P Chamunorwa
- Department of Anatomy and Physiology, Faculty of Veterinary Science, University of Pretoria, Onderstepoort, South Africa
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Proteotranscriptomics - A facilitator in omics research. Comput Struct Biotechnol J 2022; 20:3667-3675. [PMID: 35891789 PMCID: PMC9293588 DOI: 10.1016/j.csbj.2022.07.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Revised: 07/04/2022] [Accepted: 07/04/2022] [Indexed: 11/26/2022] Open
Abstract
Applications in omics research, such as comparative transcriptomics and proteomics, require the knowledge of the species-specific gene sequence and benefit from a comprehensive high-quality annotation of the coding genes to achieve high coverage. While protein-coding genes can in simple cases be detected by scanning the genome for open reading frames, in more complex genomes exonic sequences are separated by introns. Despite advances in sequencing technologies that allow for ever-growing numbers of genomes, the quality of many of the provided genome assemblies do not reach reference quality. These non-contiguous assemblies with gaps and the necessity to predict splice sites limit accurate gene annotation from solely genomic data. In contrast, the transcriptome only contains transcribed gene regions, is devoid of introns and thus provides the optimal basis for the identification of open reading frames. The additional integration of proteomics data to validate predicted protein-coding genes further enriches for accurate gene models. This review outlines the principles of the proteotranscriptomics approach, discusses common challenges and suggests methods for improvement.
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