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Li Y, An X, Mulcahey PJ, Qian Y, Xu XH, Zhao S, Mohan H, Suryanarayana SM, Bachschmid-Romano L, Brunel N, Whishaw IQ, Huang ZJ. Cortico-thalamic communication for action coordination in a skilled motor sequence. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.10.25.563871. [PMID: 37961483 PMCID: PMC10634836 DOI: 10.1101/2023.10.25.563871] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2023]
Abstract
The coordination of forelimb and orofacial movements to compose an ethological reach-to-consume behavior likely involves neural communication across brain regions. Leveraging wide-field imaging and photo-inhibition to survey across the cortex, we identified a cortical network and a high-order motor area (MOs-c), which coordinate action progression in a mouse reach-and-withdraw-to-drink (RWD) behavior. Electrophysiology and photo-inhibition across multiple projection neuron types within the MOs-c revealed differential contributions of pyramidal tract and corticothalamic (CTMOs) output channels to action progression and hand-mouth coordination. Notably, CTMOs display sustained firing throughout RWD sequence and selectively enhance RWD-relevant activity in postsynaptic thalamus neurons, which also contribute to action coordination. CTMOs receive converging monosynaptic inputs from forelimb and orofacial sensorimotor areas and are reciprocally connected to thalamic neurons, which project back to the cortical network. Therefore, motor cortex corticothalamic channel may selectively amplify the thalamic integration of cortical and subcortical sensorimotor streams to coordinate a skilled motor sequence.
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Affiliation(s)
- Yi Li
- Department of Neurobiology, Duke University, Durham, NC 27710, USA
- Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
| | - Xu An
- Department of Neurobiology, Duke University, Durham, NC 27710, USA
- Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
| | | | - Yongjun Qian
- Department of Neurobiology, Duke University, Durham, NC 27710, USA
- Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
- Current affiliation: College of Future technology, Peking-Tsinghua Center for Life Sciences, IDG/McGovern Institute for Brain Research, Beijing Advanced Center of RNA Biology, Peking University, China
| | - X. Hermione Xu
- Department of Biomedical Engineering, Duke University, Durham, NC 27710, USA
| | - Shengli Zhao
- Department of Neurobiology, Duke University, Durham, NC 27710, USA
| | - Hemanth Mohan
- Department of Neurobiology, Duke University, Durham, NC 27710, USA
| | | | | | - Nicolas Brunel
- Department of Neurobiology, Duke University, Durham, NC 27710, USA
| | - Ian Q. Whishaw
- Department of Neuroscience, Canadian Centre for Behavioural Research, University of Lethbridge, Lethbridge, AB, T1K 3M4, Canada
| | - Z. Josh Huang
- Department of Neurobiology, Duke University, Durham, NC 27710, USA
- Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
- Department of Biomedical Engineering, Duke University, Durham, NC 27710, USA
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2
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Barrett JM, Martin ME, Gao M, Druzinsky RE, Miri A, Shepherd GMG. Hand-Jaw Coordination as Mice Handle Food Is Organized around Intrinsic Structure-Function Relationships. J Neurosci 2024; 44:e0856242024. [PMID: 39251351 PMCID: PMC11484547 DOI: 10.1523/jneurosci.0856-24.2024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Revised: 08/13/2024] [Accepted: 08/20/2024] [Indexed: 09/11/2024] Open
Abstract
Rodent jaws evolved structurally to support dual functionality, for either biting or chewing food. Rodent hands also function dually during food handling, for actively manipulating or statically holding food. How are these oral and manual functions coordinated? We combined electrophysiological recording of muscle activity and kilohertz kinematic tracking to analyze masseter and hand actions as mice of both sexes handled food. Masseter activity was organized into two modes synchronized to hand movement modes. In holding/chewing mode, mastication occurred as rhythmic (∼5 Hz) masseter activity while the hands held food below the mouth. In oromanual/ingestion mode, bites occurred as lower-amplitude aperiodic masseter events that were precisely timed to follow regrips (by ∼200 ms). Thus, jaw and hand movements are flexibly coordinated during food handling: uncoupled in holding/chewing mode and tightly coordinated in oromanual/ingestion mode as regrip-bite sequences. Key features of this coordination were captured in a simple model of hierarchically orchestrated mode-switching and intramode action sequencing. We serendipitously detected an additional masseter-related action, tooth sharpening, identified as bouts of higher-frequency (∼13 Hz) rhythmic masseter activity, which was accompanied by eye displacement, including rhythmic proptosis, attributable to masseter contractions. Collectively, the findings demonstrate how a natural, complex, and goal-oriented activity is organized as an assemblage of distinct modes and complex actions, adapted for the divisions of function arising from anatomical structure. These results reveal intricate, high-speed coordination of disparate effectors and show how natural forms of dexterity can serve as a model for understanding the behavioral neurobiology of multi-body-part coordination.
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Affiliation(s)
- John M Barrett
- Department of Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, 60611
| | - Megan E Martin
- Department of Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, 60611
| | - Mang Gao
- Department of Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, 60611
| | - Robert E Druzinsky
- Department of Oral Biology, College of Dentistry, University of Illinois at Chicago, Chicago, Illinois, 60612
| | - Andrew Miri
- Department of Neurobiology, Northwestern University, Evanston, Illinois, 60208
| | - Gordon M G Shepherd
- Department of Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, 60611
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3
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Mohan K, Das S, Singh M. Leaf dicers of Nelliyampathy: Observations of preconsumptive latex avoidance by a sciurid. Ecology 2024; 105:e4294. [PMID: 38558226 DOI: 10.1002/ecy.4294] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Revised: 12/20/2023] [Accepted: 02/08/2024] [Indexed: 04/04/2024]
Affiliation(s)
- Kamaraj Mohan
- Biopsychology Laboratory, Institution of Excellence, University of Mysore, Mysuru, India
| | - Sayantan Das
- Biopsychology Laboratory, Institution of Excellence, University of Mysore, Mysuru, India
- Wildlife Information Liaison Development, Coimbatore, India
| | - Mewa Singh
- Biopsychology Laboratory, Institution of Excellence, University of Mysore, Mysuru, India
- Zoo Outreach Organization, Coimbatore, India
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4
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Timme NM, Ardinger CE, Weir SDC, Zelaya-Escobar R, Kruger R, Lapish CC. Non-consummatory behavior signals predict aversion-resistant alcohol drinking in head-fixed mice. Neuropharmacology 2024; 242:109762. [PMID: 37871677 PMCID: PMC10872650 DOI: 10.1016/j.neuropharm.2023.109762] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Revised: 10/05/2023] [Accepted: 10/12/2023] [Indexed: 10/25/2023]
Abstract
A key facet of alcohol use disorder is continuing to drink alcohol despite negative consequences (so called "aversion-resistant drinking"). In this study, we sought to assess the degree to which head-fixed mice exhibit aversion-resistant drinking and to leverage behavioral analysis techniques available in head-fixture to relate non-consummatory behaviors to aversion-resistant drinking. We assessed aversion-resistant drinking in head-fixed female and male C57BL/6 J mice. We adulterated 20% (v/v) alcohol with varying concentrations of the bitter tastant quinine to measure the degree to which mice would continue to drink despite this aversive stimulus. We recorded high-resolution video of the mice during head-fixed drinking, tracked body parts with machine vision tools, and analyzed body movements in relation to consumption. Female and male head-fixed mice exhibited heterogenous levels of aversion-resistant drinking. Additionally, non-consummatory behaviors, such as paw movement and snout movement, were related to the intensity of aversion-resistant drinking. These studies demonstrate that head-fixed mice exhibit aversion-resistant drinking and that non-consummatory behaviors can be used to assess perceived aversiveness in this paradigm. Furthermore, these studies lay the groundwork for future experiments that will utilize advanced electrophysiological techniques to record from large populations of neurons during aversion-resistant drinking to understand the neurocomputational processes that drive this clinically relevant behavior. This article is part of the Special Issue on "PFC circuit function in psychiatric disease and relevant models".
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Affiliation(s)
- Nicholas M Timme
- Department of Psychology, Indiana University - Purdue University Indianapolis, 402 N. Blackford St, LD 124, Indianapolis, IN, 46202, USA.
| | - Cherish E Ardinger
- Department of Psychology, Indiana University - Purdue University Indianapolis, 402 N. Blackford St, LD 124, Indianapolis, IN, 46202, USA
| | - Seth D C Weir
- Department of Psychology, Indiana University - Purdue University Indianapolis, 402 N. Blackford St, LD 124, Indianapolis, IN, 46202, USA
| | - Rachel Zelaya-Escobar
- Department of Psychology, Indiana University - Purdue University Indianapolis, 402 N. Blackford St, LD 124, Indianapolis, IN, 46202, USA
| | - Rachel Kruger
- Department of Psychology, Indiana University - Purdue University Indianapolis, 402 N. Blackford St, LD 124, Indianapolis, IN, 46202, USA
| | - Christopher C Lapish
- Department of Anatomy, Cell Biology, and Physiology, Indiana University School of Medicine, 635 Barnhill Drive, MSB 5035, Indianapolis, IN, 46202, USA; Stark Neuroscience Institute, Indiana University School of Medicine, 320 W. 15th St, NB 414, Indianapolis, IN, 46202, USA
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5
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Falardeau D, Dubois S, Kolta A. The coordination of chewing. Curr Opin Neurobiol 2023; 83:102805. [PMID: 37913688 DOI: 10.1016/j.conb.2023.102805] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2023] [Revised: 09/11/2023] [Accepted: 10/04/2023] [Indexed: 11/03/2023]
Abstract
Feeding behavior involves a complex organization of neural circuitry and interconnected pathways between the cortex, the brainstem, and muscles. Elevated synchronicity is required starting from the moment the animal brings the food to its mouth, chews, and initiates subsequent swallowing. Moreover, orofacial sensory and motor systems are coordinated in a way to optimize movement patterns as a result of integrating information from premotor neurons. Recent studies have uncovered significant discoveries employing various and creative techniques in order to identify key components in these vital functions. Here, we attempt to provide a brief overview of our current knowledge on orofacial systems. While our focus will be on recent breakthroughs regarding the masticatory machinery, we will also explore how it is sometimes intertwined with other functions, such as swallowing and limb movement.
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Affiliation(s)
- Dominic Falardeau
- Centre Interdisciplinaire de Recherche sur le Cerveau et l'Apprentissage (CIRCA), QC, Canada; Department of Neurosciences, Faculty of Medecine, Université de Montréal, QC, Canada
| | - Sophia Dubois
- Centre Interdisciplinaire de Recherche sur le Cerveau et l'Apprentissage (CIRCA), QC, Canada; Department of Neurosciences, Faculty of Medecine, Université de Montréal, QC, Canada
| | - Arlette Kolta
- Centre Interdisciplinaire de Recherche sur le Cerveau et l'Apprentissage (CIRCA), QC, Canada; Department of Neurosciences, Faculty of Medecine, Université de Montréal, QC, Canada; Department of Stomatology, Faculty of Dentistry, Université de Montréal, QC, Canada.
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6
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Timme NM, Ardinger CE, Weir SDC, Zelaya-Escobar R, Kruger R, Lapish CC. Non-Consummatory Behavior Signals Predict Aversion-Resistant Alcohol Drinking in Head-Fixed Mice. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.06.20.545767. [PMID: 37873153 PMCID: PMC10592797 DOI: 10.1101/2023.06.20.545767] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2023]
Abstract
A key facet of alcohol use disorder is continuing to drink alcohol despite negative consequences (so called "aversion-resistant drinking"). In this study, we sought to assess the degree to which head-fixed mice exhibit aversion-resistant drinking and to leverage behavioral analysis techniques available in head-fixture to relate non-consummatory behaviors to aversion-resistant drinking. We assessed aversion-resistant drinking in head-fixed female and male C57BL/6J mice. We adulterated 20% (v/v) alcohol with varying concentrations of the bitter tastant quinine to measure the degree to which mice would continue to drink despite this aversive stimulus. We recorded high-resolution video of the mice during head-fixed drinking, tracked body parts with machine vision tools, and analyzed body movements in relation to consumption. Female and male head-fixed mice exhibited heterogenous levels of aversion-resistant drinking. Additionally, non-consummatory behaviors, such as paw movement and snout movement, were related to the intensity of aversion-resistant drinking. These studies demonstrate that head-fixed mice exhibit aversion-resistant drinking and that non-consummatory behaviors can be used to assess perceived aversiveness in this paradigm. Furthermore, these studies lay the groundwork for future experiments that will utilize advanced electrophysiological techniques to record from large populations of neurons during aversion-resistant drinking to understand the neurocomputational processes that drive this clinically relevant behavior.
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Affiliation(s)
- Nicholas M. Timme
- Department of Psychology, Indiana University – Purdue University Indianapolis, 402 N. Blackford St, LD 124, Indianapolis, IN, 46202, USA
| | - Cherish E. Ardinger
- Department of Psychology, Indiana University – Purdue University Indianapolis, 402 N. Blackford St, LD 124, Indianapolis, IN, 46202, USA
| | - Seth D. C. Weir
- Department of Psychology, Indiana University – Purdue University Indianapolis, 402 N. Blackford St, LD 124, Indianapolis, IN, 46202, USA
| | - Rachel Zelaya-Escobar
- Department of Psychology, Indiana University – Purdue University Indianapolis, 402 N. Blackford St, LD 124, Indianapolis, IN, 46202, USA
| | - Rachel Kruger
- Department of Psychology, Indiana University – Purdue University Indianapolis, 402 N. Blackford St, LD 124, Indianapolis, IN, 46202, USA
| | - Christopher C. Lapish
- Department of Anatomy, Cell Biology, and Physiology, Indiana University School of Medicine, 635 Barnhill Drive, MSB 5035, Indianapolis, IN, 46202, USA
- Stark Neuroscience Institute, Indiana University School of Medicine, 320 W. 15 St, NB 414, Indianapolis, IN 46202, USA
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7
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Ruberte J, Schofield PN, Sundberg JP, Rodriguez-Baeza A, Carretero A, McKerlie C. Bridging mouse and human anatomies; a knowledge-based approach to comparative anatomy for disease model phenotyping. Mamm Genome 2023:10.1007/s00335-023-10005-4. [PMID: 37421464 PMCID: PMC10382392 DOI: 10.1007/s00335-023-10005-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2023] [Accepted: 06/13/2023] [Indexed: 07/10/2023]
Abstract
The laboratory mouse is the foremost mammalian model used for studying human diseases and is closely anatomically related to humans. Whilst knowledge about human anatomy has been collected throughout the history of mankind, the first comprehensive study of the mouse anatomy was published less than 60 years ago. This has been followed by the more recent publication of several books and resources on mouse anatomy. Nevertheless, to date, our understanding and knowledge of mouse anatomy is far from being at the same level as that of humans. In addition, the alignment between current mouse and human anatomy nomenclatures is far from being as developed as those existing between other species, such as domestic animals and humans. To close this gap, more in depth mouse anatomical research is needed and it will be necessary to extent and refine the current vocabulary of mouse anatomical terms.
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Affiliation(s)
- Jesús Ruberte
- Center for Animal Biotechnology and Gene Therapy, Universitat Autònoma de Barcelona, Barcelona, Spain.
- Department of Animal Health and Anatomy, Universitat Autònoma de Barcelona, Barcelona, Spain.
| | - Paul N Schofield
- The Jackson Laboratory, Bar Harbor, ME, USA
- Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK
| | - John P Sundberg
- The Jackson Laboratory, Bar Harbor, ME, USA
- Department of Dermatology, Vanderbilt University Medical Center, Nashville, TN, USA
| | | | - Ana Carretero
- Center for Animal Biotechnology and Gene Therapy, Universitat Autònoma de Barcelona, Barcelona, Spain
- Department of Animal Health and Anatomy, Universitat Autònoma de Barcelona, Barcelona, Spain
| | - Colin McKerlie
- The Hospital for Sick Children, Toronto, Canada
- Department of Lab Medicine and Pathobiology, Faculty of Medicine, University of Toronto, Toronto, Canada
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8
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Barrett JM, Martin ME, Shepherd GMG. Manipulation-specific cortical activity as mice handle food. Curr Biol 2022; 32:4842-4853.e6. [PMID: 36243014 PMCID: PMC9691616 DOI: 10.1016/j.cub.2022.09.045] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2022] [Revised: 09/02/2022] [Accepted: 09/22/2022] [Indexed: 11/06/2022]
Abstract
Food handling offers unique yet largely unexplored opportunities to investigate how cortical activity relates to forelimb movements in a natural, ethologically essential, and kinematically rich form of manual dexterity. To determine these relationships, we recorded high-speed (1,000 fps) video and multi-channel electrophysiological cortical spiking activity while mice handled food. The high temporal resolution of the video allowed us to decompose active manipulation ("oromanual") events into characteristic submovements, enabling event-aligned analysis of cortical activity. Activity in forelimb M1 was strongly modulated during food handling, generally higher during oromanual events and lower during holding intervals. Optogenetic silencing and stimulation of forelimb M1 neurons partially affected food-handling movements, exerting suppressive and activating effects, respectively. We also extended the analysis to forelimb S1 and lateral M1, finding broadly similar oromanual-related activity across all three areas. However, each area's activity displayed a distinct timing and phasic/tonic temporal profile, which was further analyzed by non-negative matrix factorization and demonstrated to be attributable to area-specific composition of activity classes. Current or future forelimb position could be accurately predicted from activity in all three regions, indicating that the cortical activity in these areas contains high information content about forelimb movements during food handling. These results thus establish that cortical activity during food handling is manipulation specific, distributed, and broadly similar across multiple sensorimotor areas while also exhibiting area- and submovement-specific relationships with the fast kinematic hallmarks of this natural form of complex free-object-handling manual dexterity.
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Affiliation(s)
- John M Barrett
- Department of Neuroscience, Feinberg School of Medicine, Northwestern University, 303 E Chicago Avenue, Chicago, IL 60611, USA.
| | - Megan E Martin
- Department of Neuroscience, Feinberg School of Medicine, Northwestern University, 303 E Chicago Avenue, Chicago, IL 60611, USA
| | - Gordon M G Shepherd
- Department of Neuroscience, Feinberg School of Medicine, Northwestern University, 303 E Chicago Avenue, Chicago, IL 60611, USA
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9
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Barkus C, Bergmann C, Branco T, Carandini M, Chadderton PT, Galiñanes GL, Gilmour G, Huber D, Huxter JR, Khan AG, King AJ, Maravall M, O'Mahony T, Ragan CI, Robinson ESJ, Schaefer AT, Schultz SR, Sengpiel F, Prescott MJ. Refinements to rodent head fixation and fluid/food control for neuroscience. J Neurosci Methods 2022; 381:109705. [PMID: 36096238 DOI: 10.1016/j.jneumeth.2022.109705] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 09/01/2022] [Accepted: 09/03/2022] [Indexed: 12/14/2022]
Abstract
The use of head fixation in mice is increasingly common in research, its use having initially been restricted to the field of sensory neuroscience. Head restraint has often been combined with fluid control, rather than food restriction, to motivate behaviour, but this too is now in use for both restrained and non-restrained animals. Despite this, there is little guidance on how best to employ these techniques to optimise both scientific outcomes and animal welfare. This article summarises current practices and provides recommendations to improve animal wellbeing and data quality, based on a survey of the community, literature reviews, and the expert opinion and practical experience of an international working group convened by the UK's National Centre for the Replacement, Refinement and Reduction of Animals in Research (NC3Rs). Topics covered include head fixation surgery and post-operative care, habituation to restraint, and the use of fluid/food control to motivate performance. We also discuss some recent developments that may offer alternative ways to collect data from large numbers of behavioural trials without the need for restraint. The aim is to provide support for researchers at all levels, animal care staff, and ethics committees to refine procedures and practices in line with the refinement principle of the 3Rs.
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Affiliation(s)
- Chris Barkus
- National Centre for Replacement, Refinement and Reduction of Animals in Research (NC3Rs), London, UK.
| | | | - Tiago Branco
- Sainsbury Wellcome Centre, University College London, London, UK
| | - Matteo Carandini
- Institute of Ophthalmology, University College London, London, UK
| | - Paul T Chadderton
- School of Physiology, Pharmacology and Neuroscience, University of Bristol, Bristol, UK
| | | | | | - Daniel Huber
- Department of Basic Neurosciences, University of Geneva, Geneva, Switzerland
| | | | - Adil G Khan
- Centre for Developmental Neurobiology, King's College London, London, UK
| | - Andrew J King
- Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford, UK
| | - Miguel Maravall
- Sussex Neuroscience, School of Life Sciences, University of Sussex, Brighton, UK
| | - Tina O'Mahony
- Sainsbury Wellcome Centre, University College London, London, UK
| | - C Ian Ragan
- National Centre for Replacement, Refinement and Reduction of Animals in Research (NC3Rs), London, UK
| | - Emma S J Robinson
- School of Physiology, Pharmacology and Neuroscience, University of Bristol, Bristol, UK
| | - Andreas T Schaefer
- Sensory Circuits and Neurotechnology Laboratory, The Francis Crick Institute, London, UK; Department of Neuroscience, Physiology & Pharmacology, University College London, London, UK
| | - Simon R Schultz
- Centre for Neurotechnology and Department of Bioengineering, Imperial College London, London, UK
| | | | - Mark J Prescott
- National Centre for Replacement, Refinement and Reduction of Animals in Research (NC3Rs), London, UK
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Hardin A, Schlupp I. Using machine learning and DeepLabCut in animal behavior. Acta Ethol 2022. [DOI: 10.1007/s10211-022-00397-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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11
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Solby H, Radovanovic M, Sommerville JA. A New Look at Infant Problem-Solving: Using DeepLabCut to Investigate Exploratory Problem-Solving Approaches. Front Psychol 2021; 12:705108. [PMID: 34819894 PMCID: PMC8606407 DOI: 10.3389/fpsyg.2021.705108] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Accepted: 10/18/2021] [Indexed: 12/22/2022] Open
Abstract
When confronted with novel problems, problem-solvers must decide whether to copy a modeled solution or to explore their own unique solutions. While past work has established that infants can learn to solve problems both through their own exploration and through imitation, little work has explored the factors that influence which of these approaches infants select to solve a given problem. Moreover, past work has treated imitation and exploration as qualitatively distinct, although these two possibilities may exist along a continuum. Here, we apply a program novel to developmental psychology (DeepLabCut) to archival data (Lucca et al., 2020) to investigate the influence of the effort and success of an adult's modeled solution, and infants' firsthand experience with failure, on infants' imitative versus exploratory problem-solving approaches. Our results reveal that tendencies toward exploration are relatively immune to the information from the adult model, but that exploration generally increased in response to firsthand experience with failure. In addition, we found that increases in maximum force and decreases in trying time were associated with greater exploration, and that exploration subsequently predicted problem-solving success on a new iteration of the task. Thus, our results demonstrate that infants increase exploration in response to failure and that exploration may operate in a larger motivational framework with force, trying time, and expectations of task success.
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12
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North R, Wurr R, Macon R, Mannion C, Hyde J, Torres-Espin A, Rosenzweig ES, Ferguson AR, Tuszynski MH, Beattie MS, Bresnahan JC, Joiner WM. Quantifying the kinematic features of dexterous finger movements in nonhuman primates with markerless tracking. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2021; 2021:6110-6115. [PMID: 34892511 DOI: 10.1109/embc46164.2021.9630018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Research using nonhuman primate models for human disease frequently requires behavioral observational techniques to quantify functional outcomes. The ability to assess reaching and grasping patterns is of particular interest in clinical conditions that affect the motor system (e.g., spinal cord injury, SCI). Here we explored the use of DeepLabCut, an open-source deep learning toolset, in combination with a standard behavioral task (Brinkman Board) to quantify nonhuman primate performance in precision grasping. We examined one male rhesus macaque (Macaca mulatta) in the task which involved retrieving rewards from variously-oriented shallow wells. Simultaneous recordings were made using GoPro Hero7 Black cameras (resolution 1920 x 1080 at 120 fps) from two different angles (from the side and top of the hand motion). The task/device design necessitates use of the right hand to complete the task. Two neural networks (corresponding to the top and side view cameras) were trained using 400 manually annotated images, tracking 19 unique landmarks each. Based on previous reports, this produced sufficient tracking (Side: trained pixel error of 2.15, test pixel error of 11.25; Top: trained pixel error of 2.06, test pixel error of 30.31) so that landmarks could be tracked on the remaining frames. Landmarks included in the tracking were the spatial location of the knuckles and the fingernails of each digit, and three different behavioral measures were quantified for assessment of hand movement (finger separation, middle digit extension and preshaping distance). Together, our preliminary results suggest that this markerless approach is a possible method to examine specific kinematic features of dexterous function.Clinical Relevance- The methodology presented below allows for the markerless tracking of kinematic features of dexterous finger movement by non-human primates. This method could allow for direct comparisons between human patients and non-human primate models of clinical conditions (e.g., spinal cord injury). This would provide objective quantitative metrics and crucial information for assessing movement impairments across populations and the potential translation of treatments, interventions and their outcomes.
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13
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Sobinov AR, Bensmaia SJ. The neural mechanisms of manual dexterity. Nat Rev Neurosci 2021; 22:741-757. [PMID: 34711956 DOI: 10.1038/s41583-021-00528-7] [Citation(s) in RCA: 62] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/21/2021] [Indexed: 01/22/2023]
Abstract
The hand endows us with unparalleled precision and versatility in our interactions with objects, from mundane activities such as grasping to extraordinary ones such as virtuoso pianism. The complex anatomy of the human hand combined with expansive and specialized neuronal control circuits allows a wide range of precise manual behaviours. To support these behaviours, an exquisite sensory apparatus, spanning the modalities of touch and proprioception, conveys detailed and timely information about our interactions with objects and about the objects themselves. The study of manual dexterity provides a unique lens into the sensorimotor mechanisms that endow the nervous system with the ability to flexibly generate complex behaviour.
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Affiliation(s)
- Anton R Sobinov
- Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL, USA.,Neuroscience Institute, University of Chicago, Chicago, IL, USA
| | - Sliman J Bensmaia
- Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL, USA. .,Neuroscience Institute, University of Chicago, Chicago, IL, USA. .,Committee on Computational Neuroscience, University of Chicago, Chicago, IL, USA.
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14
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Lecomte CG, Audet J, Harnie J, Frigon A. A Validation of Supervised Deep Learning for Gait Analysis in the Cat. Front Neuroinform 2021; 15:712623. [PMID: 34489668 PMCID: PMC8417424 DOI: 10.3389/fninf.2021.712623] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Accepted: 07/27/2021] [Indexed: 11/13/2022] Open
Abstract
Gait analysis in cats and other animals is generally performed with custom-made or commercially developed software to track reflective markers placed on bony landmarks. This often involves costly motion tracking systems. However, deep learning, and in particular DeepLabCutTM (DLC), allows motion tracking without requiring placing reflective markers or an expensive system. The purpose of this study was to validate the accuracy of DLC for gait analysis in the adult cat by comparing results obtained with DLC and a custom-made software (Expresso) that has been used in several cat studies. Four intact adult cats performed tied-belt (both belts at same speed) and split-belt (belts operating at different speeds) locomotion at different speeds and left-right speed differences on a split-belt treadmill. We calculated several kinematic variables, such as step/stride lengths and joint angles from the estimates made by the two software and assessed the agreement between the two measurements using intraclass correlation coefficient or Lin's concordance correlation coefficient as well as Pearson's correlation coefficients. The results showed that DLC is at least as precise as Expresso with good to excellent agreement for all variables. Indeed, all 12 variables showed an agreement above 0.75, considered good, while nine showed an agreement above 0.9, considered excellent. Therefore, deep learning, specifically DLC, is valid for measuring kinematic variables during locomotion in cats, without requiring reflective markers and using a relatively low-cost system.
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Affiliation(s)
- Charly G Lecomte
- Department of Pharmacology-Physiology, Faculty of Medicine and Health Sciences, Centre de Recherche du CHUS, Université de Sherbrooke, Sherbrooke, QC, Canada
| | - Johannie Audet
- Department of Pharmacology-Physiology, Faculty of Medicine and Health Sciences, Centre de Recherche du CHUS, Université de Sherbrooke, Sherbrooke, QC, Canada
| | - Jonathan Harnie
- Department of Pharmacology-Physiology, Faculty of Medicine and Health Sciences, Centre de Recherche du CHUS, Université de Sherbrooke, Sherbrooke, QC, Canada
| | - Alain Frigon
- Department of Pharmacology-Physiology, Faculty of Medicine and Health Sciences, Centre de Recherche du CHUS, Université de Sherbrooke, Sherbrooke, QC, Canada
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15
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Yamawaki N, Raineri Tapies MG, Stults A, Smith GA, Shepherd GMG. Circuit organization of the excitatory sensorimotor loop through hand/forelimb S1 and M1. eLife 2021; 10:e66836. [PMID: 33851917 PMCID: PMC8046433 DOI: 10.7554/elife.66836] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2021] [Accepted: 04/03/2021] [Indexed: 12/16/2022] Open
Abstract
Sensory-guided limb control relies on communication across sensorimotor loops. For active touch with the hand, the longest loop is the transcortical continuation of ascending pathways, particularly the lemnisco-cortical and corticocortical pathways carrying tactile signals via the cuneate nucleus, ventral posterior lateral (VPL) thalamus, and primary somatosensory (S1) and motor (M1) cortices to reach corticospinal neurons and influence descending activity. We characterized excitatory connectivity along this pathway in the mouse. In the lemnisco-cortical leg, disynaptic cuneate→VPL→S1 connections excited mainly layer (L) 4 neurons. In the corticocortical leg, S1→M1 connections from L2/3 and L5A neurons mainly excited downstream L2/3 neurons, which excite corticospinal neurons. The findings provide a detailed new wiring diagram for the hand/forelimb-related transcortical circuit, delineating a basic but complex set of cell-type-specific feedforward excitatory connections that selectively and extensively engage diverse intratelencephalic projection neurons, thereby polysynaptically linking subcortical somatosensory input to cortical motor output to spinal cord.
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Affiliation(s)
- Naoki Yamawaki
- Department of Physiology, Feinberg School of Medicine, Northwestern UniversityChicagoUnited States
| | | | - Austin Stults
- Department of Microbiology-Immunology, Feinberg School of Medicine, Northwestern UniversityChicagoUnited States
| | - Gregory A Smith
- Department of Microbiology-Immunology, Feinberg School of Medicine, Northwestern UniversityChicagoUnited States
| | - Gordon MG Shepherd
- Department of Physiology, Feinberg School of Medicine, Northwestern UniversityChicagoUnited States
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16
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Warriner CL, Fageiry SK, Carmona LM, Miri A. Towards Cell and Subtype Resolved Functional Organization: Mouse as a Model for the Cortical Control of Movement. Neuroscience 2020; 450:151-160. [PMID: 32771500 PMCID: PMC10727850 DOI: 10.1016/j.neuroscience.2020.07.054] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2020] [Revised: 06/06/2020] [Accepted: 07/30/2020] [Indexed: 10/23/2022]
Abstract
Despite a long history of interrogation, the functional organization of motor cortex remains obscure. A major barrier has been the inability to measure and perturb activity with sufficient resolution to reveal clear functional elements within motor cortex and its associated circuits. Increasingly, the mouse has been employed as a model to facilitate application of contemporary approaches with the potential to surmount this barrier. In this brief essay, we consider these approaches and their use in the context of studies aimed at resolving the logic of motor cortical operation.
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Affiliation(s)
- Claire L Warriner
- Department of Neuroscience, The Mortimer B. Zuckerman Mind, Brain, and Behavior Institute, Columbia University, New York, NY 10027, USA
| | - Samaher K Fageiry
- Department of Neuroscience, The Mortimer B. Zuckerman Mind, Brain, and Behavior Institute, Columbia University, New York, NY 10027, USA
| | - Lina M Carmona
- Department of Neuroscience, The Mortimer B. Zuckerman Mind, Brain, and Behavior Institute, Columbia University, New York, NY 10027, USA
| | - Andrew Miri
- Department of Neurobiology, Northwestern University, Evanston, IL 60201, USA.
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17
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A Primer on Motion Capture with Deep Learning: Principles, Pitfalls, and Perspectives. Neuron 2020; 108:44-65. [DOI: 10.1016/j.neuron.2020.09.017] [Citation(s) in RCA: 70] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Revised: 09/02/2020] [Accepted: 09/10/2020] [Indexed: 11/21/2022]
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18
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Dutcher AM, Truong KV, Miller DD, Allred RP, Nudi E, Jones TA. Training in a cooperative bimanual skilled reaching task, the popcorn retrieval task, improves unimanual function after motor cortical infarcts in rats. Behav Brain Res 2020; 396:112900. [PMID: 32941880 DOI: 10.1016/j.bbr.2020.112900] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Revised: 09/02/2020] [Accepted: 09/03/2020] [Indexed: 10/23/2022]
Abstract
Disuse of the paretic hand after stroke is encouraged by compensatory reliance on the nonparetic hand, to exacerbate impairment and potentially constrain motor rehabilitation efficacy. Rodent stroke model findings support that learning new unimanual skills with the nonparetic forelimb diminishes functional improvements that can be driven by rehabilitative training of the paretic forelimb. The influence of learning new ways of skillfully using the two hands together on paretic side function is much less clear. To begin to explore this, we developed a new cooperative bimanual skilled reaching task for rats, the Popcorn Retrieval Task. After motor cortical infarcts impaired an established unimanual reaching skill in the paretic forelimb, rats underwent a 7 week period of de novo bimanual training (BiT) or no-training control procedures (Cont). Probes of paretic forelimb unimanual performance revealed significant improvements during and after the training period in BiT vs. Cont. We additionally observed a striking change in the bimanual task strategy over training days: a switch from the paretic to the nonparetic forelimb for initiating reach-to-grasp sequences. This motivated another study to test whether rats that established the bimanual skill prior to the infarcts would similarly switch handedness, which they did not, though paretic paw use for manipulative movements diminished. These results indicate that unimanual function of the paretic side can be improved by novel bimanual skill practice, even when it involves compensatory reliance on the nonparetic hand. They further support the suitability of the Popcorn Retrieval Task for studying bimanual skill learning effects in rats.
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Affiliation(s)
| | | | | | | | - Evan Nudi
- Psychology Department, United States
| | - Theresa A Jones
- Institute for Neuroscience, United States; Psychology Department, United States.
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19
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Naghizadeh M, Mohajerani MH, Whishaw IQ. Mouse Arm and hand movements in grooming are reaching movements: Evolution of reaching, handedness, and the thumbnail. Behav Brain Res 2020; 393:112732. [PMID: 32505659 DOI: 10.1016/j.bbr.2020.112732] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Revised: 05/19/2020] [Accepted: 05/23/2020] [Indexed: 11/25/2022]
Abstract
Grooming in the mouse features hand licking and symmetric and asymmetric arm and hand "strokes" over the face and body to maintain pelage. Grooming is syntactically organized but the structure of individualized movements of the arm, hand, and tongue have not been examined. Here spontaneous and water-induced grooming was video recorded in free-moving and head-fixed mice and subject to frame-by-frame video inspection and kinematic analysis using Physics Tracker. All groom arm and hand movements had a structure similar to that described for reach-to-eat movements. The movement included the hand lifting from the floor to supinate with the digits flexing and closed to a collect position, an aim position directed to a groom target, an advance to the target during which the fingers extend and open and the hand pronates, a grasp of a target on the snout, nose, or vibrissae, and a withdraw to the mouth where licking occurs, or a return to the starting position. This structure was present in individual unilateral forelimb groom strokes, in bilateral symmetric, or asymmetric groom strokes, and comprised the individuated components of a sequence of groom movements. Reach-to-groom movements could feature an ulnar adduction that positions the ulnar portion of the hand including and the thumb across the eye and nose, a movement that aids Hardarian fluid spreading. It is proposed that the mouse thumb nail is an anatomical feature that minimizes damage to the eye or nose that might be incurred by a claw. This analysis of the reach-to-groom movement provides insights into the flexibility of hand use in adaptive behavior, the evolution of skilled reaching movements, the neural control of reaching movements and the presence of the thumb nail in the mouse.
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Affiliation(s)
- Milad Naghizadeh
- Department of Neuroscience, Canadian Centre of Behavioural Neuroscience, University of Lethbridge, Canada.
| | - Majid H Mohajerani
- Department of Neuroscience, Canadian Centre of Behavioural Neuroscience, University of Lethbridge, Canada.
| | - Ian Q Whishaw
- Department of Neuroscience, Canadian Centre of Behavioural Neuroscience, University of Lethbridge, Canada.
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