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Hauer C, Nöth E, Barnhill A, Maier A, Guthunz J, Hofer H, Cheng RX, Barth V, Bergler C. ORCA-SPY enables killer whale sound source simulation, detection, classification and localization using an integrated deep learning-based segmentation. Sci Rep 2023; 13:11106. [PMID: 37429871 DOI: 10.1038/s41598-023-38132-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2023] [Accepted: 07/03/2023] [Indexed: 07/12/2023] Open
Abstract
Acoustic identification of vocalizing individuals opens up new and deeper insights into animal communications, such as individual-/group-specific dialects, turn-taking events, and dialogs. However, establishing an association between an individual animal and its emitted signal is usually non-trivial, especially for animals underwater. Consequently, a collection of marine species-, array-, and position-specific ground truth localization data is extremely challenging, which strongly limits possibilities to evaluate localization methods beforehand or at all. This study presents ORCA-SPY, a fully-automated sound source simulation, classification and localization framework for passive killer whale (Orcinus orca) acoustic monitoring that is embedded into PAMGuard, a widely used bioacoustic software toolkit. ORCA-SPY enables array- and position-specific multichannel audio stream generation to simulate real-world ground truth killer whale localization data and provides a hybrid sound source identification approach integrating ANIMAL-SPOT, a state-of-the-art deep learning-based orca detection network, followed by downstream Time-Difference-Of-Arrival localization. ORCA-SPY was evaluated on simulated multichannel underwater audio streams including various killer whale vocalization events within a large-scale experimental setup benefiting from previous real-world fieldwork experience. Across all 58,320 embedded vocalizing killer whale events, subject to various hydrophone array geometries, call types, distances, and noise conditions responsible for a signal-to-noise ratio varying from [Formula: see text] dB to 3 dB, a detection rate of 94.0 % was achieved with an average localization error of 7.01[Formula: see text]. ORCA-SPY was field-tested on Lake Stechlin in Brandenburg Germany under laboratory conditions with a focus on localization. During the field test, 3889 localization events were observed with an average error of 29.19[Formula: see text] and a median error of 17.54[Formula: see text]. ORCA-SPY was deployed successfully during the DeepAL fieldwork 2022 expedition (DLFW22) in Northern British Columbia, with a mean average error of 20.01[Formula: see text] and a median error of 11.01[Formula: see text] across 503 localization events. ORCA-SPY is an open-source and publicly available software framework, which can be adapted to various recording conditions as well as animal species.
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Affiliation(s)
- Christopher Hauer
- Pattern Recognition Lab, Department of Computer Science, Friedrich-Alexander-Universität Erlangen-Nürnberg, Martensstr. 3, 91058, Erlangen, Germany.
| | - Elmar Nöth
- Pattern Recognition Lab, Department of Computer Science, Friedrich-Alexander-Universität Erlangen-Nürnberg, Martensstr. 3, 91058, Erlangen, Germany
| | - Alexander Barnhill
- Pattern Recognition Lab, Department of Computer Science, Friedrich-Alexander-Universität Erlangen-Nürnberg, Martensstr. 3, 91058, Erlangen, Germany
| | - Andreas Maier
- Pattern Recognition Lab, Department of Computer Science, Friedrich-Alexander-Universität Erlangen-Nürnberg, Martensstr. 3, 91058, Erlangen, Germany
| | | | - Heribert Hofer
- Leibniz Institute for Zoo and Wildlife Research (IZW), Alfred-Kowalke-Straße 17, 10315, Berlin, Germany
- Department of Veterinary Medicine, Freie Universität Berlin, 14195, Berlin, Germany
- Department of Biology, Chemistry, Pharmacy, Freie Universität Berlin, 14195, Berlin, Germany
| | - Rachael Xi Cheng
- Leibniz Institute for Zoo and Wildlife Research (IZW), Alfred-Kowalke-Straße 17, 10315, Berlin, Germany
| | - Volker Barth
- Anthro-Media, Nansenstr. 19, 12047, Berlin, Germany
| | - Christian Bergler
- Pattern Recognition Lab, Department of Computer Science, Friedrich-Alexander-Universität Erlangen-Nürnberg, Martensstr. 3, 91058, Erlangen, Germany.
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Patris J, Malige F, Hamame M, Glotin H, Barchasz V, Gies V, Marzetti S, Buchan S. Medium-term acoustic monitoring of small cetaceans in Patagonia, Chile. PeerJ 2023; 11:e15292. [PMID: 37334123 PMCID: PMC10276556 DOI: 10.7717/peerj.15292] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Accepted: 04/04/2023] [Indexed: 06/20/2023] Open
Abstract
Coastal dolphins and porpoises such as the Chilean dolphin (Cephalorhynchus eutropia), the Peale's dolphin (Lagenorhynchus australis), and the Burmeister's porpoise (Phocoena spinipinnis) inhabit the remote areas of Chilean Patagonia. Human development is growing fast in these parts and may constitute a serious threat to such poorly known species. It is thus urgent to develop new tools to try and study these cryptic species and find out more about their behavior, population levels, and habits. These odontocetes emit narrow-band high-frequency (NBHF) clicks and efforts have been made to characterize precisely their acoustic production. Passive acoustic monitoring is a common way to study these animals. Nevertheless, as the signal frequency is usually higher than 100 kHz, storage problems are acute and do not allow for long-term monitoring. The solutions for recording NBHF clicks are usually twofold: either short duration, opportunistic recording from a small boat in presence of the animals (short-term monitoring) or long-term monitoring using devices including a click detector and registering events rather than sound. We suggest, as another possibility, medium-term monitoring, arguing that today's devices have reached a level of performance allowing for a few days of continual recording even at these extremely high frequencies and in difficult conditions, combined with a long-term click detector. As an example, during 2021, we performed a quasi-continuous recording for one week with the Qualilife High-Blue recorder anchored in a fjord near Puerto Cisnes, Region de Aysen, Chile. We detected more than 13,000 clicks, grouped in 22 periods of passing animals. Our detected clicks are quite similar to precedent results but, due to the large number of clicks recorded, we find a larger variability of parameters. Several rapid sequences of clicks (buzz) were found in the recordings and their features are consistent with previous studies: on average they have a larger bandwidth and a lower peak frequency than the usual clicks. We also installed in the same place a click detector (C-POD) and the two devices compare well and show the same number and duration of periods of animals presence. Passages of odontocetes were happening on average each three hours. We thus confirm the high site fidelity for the species of dolphins emitting NBHF clicks present in this zone. Finally, we confirm that the combined use of recording and detection devices is probably a good alternative to study these poorly known species in remote areas.
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Affiliation(s)
| | - Franck Malige
- Laboratoire Informatique et Systèmes (LIS), CNRS UMR 7020, Toulon, France
| | - Madeleine Hamame
- Centro de Investigación en Ecosistemas de la Patagonia (CIEP), Coyhaique, Chile
| | - Hervé Glotin
- Laboratoire Informatique et Systèmes (LIS), CNRS UMR 7020, Toulon, France
- Scientific Microsystems for Internet of Things (SMIoT), Université de Toulon et du Var, Toulon, France
| | - Valentin Barchasz
- Scientific Microsystems for Internet of Things (SMIoT), Université de Toulon et du Var, Toulon, France
| | - Valentin Gies
- Scientific Microsystems for Internet of Things (SMIoT), Université de Toulon et du Var, Toulon, France
- Institut Matériaux Microélectronique Nanosciences de Provence (IM2NP), CNRS UMR 7334, Toulon, France
| | - Sebastian Marzetti
- Scientific Microsystems for Internet of Things (SMIoT), Université de Toulon et du Var, Toulon, France
- Institut Matériaux Microélectronique Nanosciences de Provence (IM2NP), CNRS UMR 7334, Toulon, France
| | - Susannah Buchan
- Center for Oceanographic Research COPAS COASTAL, Universidad de Concepción, Concepción, Chile
- Departamento de Oceanografía, Universidad de Concepción, Concepción, Chile
- Centro de Estudios Avanzado en Zonas Aridas (CEAZA), Coquimbo, Chile
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Graham IM, Gillespie D, Gkikopoulou KC, Hastie GD, Thompson PM. Directional hydrophone clusters reveal evasive responses of small cetaceans to disturbance during construction at offshore windfarms. Biol Lett 2023; 19:20220101. [PMID: 36651028 PMCID: PMC9845968 DOI: 10.1098/rsbl.2022.0101] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Abstract
Mitigation measures to disperse marine mammals prior to pile-driving include acoustic deterrent devices and piling soft starts, but their efficacy remains uncertain. We developed a self-contained portable hydrophone cluster to detect small cetacean movements from the distributions of bearings to detections. Using an array of clusters within 10 km of foundation pile installations, we tested the hypothesis that harbour porpoises (Phocoena phocoena) respond to mitigation measures at offshore windfarm sites by moving away. During baseline periods, porpoise movements were evenly distributed in all directions. By contrast, animals showed significant directional movement away from sound sources during acoustic deterrent device use and piling soft starts. We demonstrate that porpoises respond to measures aimed to mitigate the most severe impacts of construction at offshore windfarms by swimming directly away from these sound sources. Portable directional hydrophone clusters now provide opportunities to characterize responses to disturbance sources across a broad suite of habitats and contexts.
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Affiliation(s)
- I. M. Graham
- Lighthouse Field Station, School of Biological Sciences, University of Aberdeen, Cromarty, Ross-shire IV11 8YL, Scotland
| | - D. Gillespie
- Sea Mammal Research Unit, Scottish Oceans Institute, University of St Andrews, Fife KY16 8LB, Scotland
| | - K. C. Gkikopoulou
- Sea Mammal Research Unit, Scottish Oceans Institute, University of St Andrews, Fife KY16 8LB, Scotland
| | - G. D. Hastie
- Sea Mammal Research Unit, Scottish Oceans Institute, University of St Andrews, Fife KY16 8LB, Scotland
| | - P. M. Thompson
- Lighthouse Field Station, School of Biological Sciences, University of Aberdeen, Cromarty, Ross-shire IV11 8YL, Scotland
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Use of multibeam imaging sonar for observation of marine mammals and fish on a marine renewable energy site. PLoS One 2022; 17:e0275978. [PMID: 36516145 PMCID: PMC9750035 DOI: 10.1371/journal.pone.0275978] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Accepted: 09/27/2022] [Indexed: 12/15/2022] Open
Abstract
Environmental data is crucial for planning, permitting, execution and post construction monitoring of marine renewable energy projects. In harsh conditions in which marine renewable energy is harvested, integrated monitoring platforms comprising multibeam imaging sonar systems coupled with other sensors can provide multiparametric data of the marine environment surrounding marine renewable energy installations. The aim of this study was to test the possibilities of observing the occurrence of fish and marine mammals using a multibeam imaging sonar system deployed at a wave power test site. The results obtained from a ten-day data set proved the platform as suitable for long time underwater monitoring and also revealed that the occurrence of fish and marine mammals was distributed across characteristic time and space domains. Large fish [>0.4 m] frequently occurred at night-time and near the benthic zone. Small fish [<0.2 m] frequently occurred during daylight and within the pelagic zone. The occurrence of seals was periodically distributed along a daily cycle, with intervals of 1-2 hours between maxima and minima. In conclusion, the use of multibeam imaging sonar can be a reliable technique for the qualitative and quantitative observations of fish and marine mammals in general and at marine renewable energy sites specifically, including protected and economically important species.
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Aniceto AS, Ferguson EL, Pedersen G, Tarroux A, Primicerio R. Temporal patterns in the soundscape of a Norwegian gateway to the Arctic. Sci Rep 2022; 12:7655. [PMID: 35538135 PMCID: PMC9090731 DOI: 10.1038/s41598-022-11183-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Accepted: 04/19/2022] [Indexed: 11/16/2022] Open
Abstract
As an Arctic gateway, the Norwegian Sea sustains a rich diversity of seasonal and resident species of soniferous animals, vulnerable to the effects of climate change and anthropogenic activities. We show the occurrence of seasonal patterns of acoustic signals in a small canyon off Northern Norway, and investigate cetacean vocal behavior, human-made noise, and climatic contributions to underwater sound between January and May 2018. Mostly median sound levels ranged between 68.3 and 96.31 dB re 1 μPa2 across 1/3 octave bands (13 Hz-16 kHz), with peaks in February and March. Frequencies under 2 kHz were dominated by sounds from baleen whales with highest rates of occurrence during winter and early spring. During late-spring non-biological sounds were predominant at higher frequencies that were linked mainly to ship traffic. Seismic pulses were also recorded during spring. We observed a significant effect of wind speed and ship sailing time on received sound levels across multiple distance ranges. Our results provide a new assessment of high-latitude continental soundscapes in the East Atlantic Ocean, useful for management strategies in areas where anthropogenic pressure is increasing. Based on the current status of the local soundscape, we propose considerations for acoustic monitoring to be included in future management plans.
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Affiliation(s)
- A S Aniceto
- Department of Fisheries and Bioeconomics, Arctic University of Norway, Tromsø, Norway.
| | | | - G Pedersen
- Department of Marine Ecosystem Acoustics, Institute of Marine Research, 1870, Bergen, Norway
| | - A Tarroux
- Fram Centre - High North Research Centre for Climate and Environment, Norwegian Institute for Nature Research, 9296, Tromsø, Norway
| | - R Primicerio
- Department of Fisheries and Bioeconomics, Arctic University of Norway, Tromsø, Norway
- Fram Centre - High North Research Centre for Climate and Environment, Institute of Marine Research, 9296, Tromsø, Norway
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Horne N, Culloch RM, Schmitt P, Lieber L, Wilson B, Dale AC, Houghton JDR, Kregting LT. Collision risk modelling for tidal energy devices: A flexible simulation-based approach. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2021; 278:111484. [PMID: 33120093 DOI: 10.1016/j.jenvman.2020.111484] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2020] [Revised: 09/21/2020] [Accepted: 09/29/2020] [Indexed: 06/11/2023]
Abstract
The marine renewable energy industry is expanding as countries strive to reach climate targets as set out in the Paris Agreement. For tidal energy devices, the potential risk for animals to collide with a device, particularly its moving parts such as rotor blades, is often a major barrier in the consenting process. Theoretical work surrounding collision risk has commonly made use of a formulaic modelling approach. However, whilst providing a platform to assess conventional horizontal axis tidal turbines, the frameworks applied lack the flexibility to incorporate novel device designs or more complex animal movement parameters (e.g. dive trajectories). To demonstrate the novel simulation-based approach to estimating collision probabilities a hypothetical case study was used to demonstrated how the approach can assess the influence that variations in ecological and behavioural data had on collision probabilities. To do this, a tidal kite moving in a 3D figure-of-eight trajectory and a seal-shaped object were modelled and variations to angle of approach, speed and size of the animal were made. To further improve the collision risk estimates, results of the simulations were post-processed by integrating a hypothetical dive profile. The simulations showed how variation in the input parameters and additional post-processing influence collision probabilities. Our results demonstrate the potential for using this simulation-based approach for assessing collision risk, highlighting the flexibility it offers by way of incorporating empirical data or expert elicitation to better inform the modelling process. This framework, where device type, configuration and animal-related parameters can be varied with relative simplicity, on a case-by-case basis, provides a more tailored tool for assessing a diverse range of interactions between marine renewable energy developments and receptors. In providing a robust and transparent quantitative approach to addressing collision risk this flexible approach can better inform the decision-making process and aid progress with respect to developing a renewable energy industry in a sustainable manner. Therefore, the approach outlined has clear applications that are relevant to many stakeholders and can contribute to our ability to ensure we achieve sustainable growth in the marine renewable energy industry as part of a global strategy to combat climate change.
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Affiliation(s)
- Nicholas Horne
- School of Natural and Built Environment, Queen's University Belfast, Queen's Marine Laboratory, 12-13 The Strand, Portaferry, Northern Ireland, UK.
| | - Ross M Culloch
- Marine Scotland Science, Scottish Government, Marine Laboratory, Aberdeen, Scotland, UK
| | - Pál Schmitt
- School of Chemistry and Chemical Engineering, Queen's University Belfast, Queen's Marine Laboratory, 12-13 The Strand, Portaferry, Northern Ireland, UK
| | - Lilian Lieber
- School of Chemistry and Chemical Engineering, Queen's University Belfast, Queen's Marine Laboratory, 12-13 The Strand, Portaferry, Northern Ireland, UK
| | - Ben Wilson
- Scottish Association for Marine Science (SAMS), University of the Highlands and Islands, Oban, Argyll, Scotland, UK
| | - Andrew C Dale
- Scottish Association for Marine Science (SAMS), University of the Highlands and Islands, Oban, Argyll, Scotland, UK
| | - Jonathan D R Houghton
- School of Biological Sciences, Queen's University Belfast, Chlorine Gardens, Belfast, Northern Ireland, UK
| | - Louise T Kregting
- School of Natural and Built Environment, Queen's University Belfast, Queen's Marine Laboratory, 12-13 The Strand, Portaferry, Northern Ireland, UK
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Applying Two Active Acoustic Technologies to Document Presence of Large Marine Animal Targets at a Marine Renewable Energy Site. JOURNAL OF MARINE SCIENCE AND ENGINEERING 2020. [DOI: 10.3390/jmse8090704] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Coastal regions are highly used by humans. The growing marine renewable energy (MRE) industry will add to existing anthropogenic pressures in these regions. Regulatory bodies require animal risk assessment before new industrial activities can progress, and MRE is no exception. Preliminary data of marine mammal use of an MRE device deployment location could be informative to permitting. A combination of downlooking hydroacoustics using an echosounder and acoustic camera (imaging sonar) was used to provide a number of large targets (proxy for large fish and marine mammals) in an area of interest for MRE tidal turbine deployment in Western Passage, Maine, USA. Data were collected in May, June, August, and September of 2010 and 2011. Of the nine large targets confirmed to be animals, eight were porpoises and one was a shark. Few large targets were observed in May and June, with the majority (90%) being present in August and September of both years. The most large targets were observed when tidal current speed was less than 1 m·s−1. These data provide a preliminary assessment of large targets in a single location over sixteen 24-h surveys. The aforementioned methodology could be used for future pre- and post-installation assessments at MRE device deployment locations. Their use in concert with visual and passive acoustic monitoring can provide water depth usage by marine mammals, which is a metric that is difficult to assess with passive acoustic and visual techniques.
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