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Song W, Wang JX, Cao LJ, Chen JC, Bao WX, Chen M, Wei SJ. A chromosome-level genome for the flower thrips Frankliniella intonsa. Sci Data 2024; 11:280. [PMID: 38459039 PMCID: PMC10923943 DOI: 10.1038/s41597-024-03113-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Accepted: 03/04/2024] [Indexed: 03/10/2024] Open
Abstract
The flower thrips Frankliniella intonsa (Thysanoptera: Thripidae) is a common insect found in flowers of many plants. Sometimes, F. intonsa causes damage to crops through direct feeding and transmission of plant viruses. Here, we assembled a chromosomal level genome of F. intonsa using the Illumina, Oxford Nanopore (ONT), and Hi-C technologies. The assembled genome had a size of 209.09 Mb, with a contig N50 of 997 bp, scaffold N50 of 13.415 Mb, and BUSCO completeness of 92.5%. The assembled contigs were anchored on 15 chromosomes. A set of 14,109 protein-coding genes were annotated in the genome with a BUSCO completeness of 95.0%. The genome contained 491 non-coding RNA and 0.57% of interspersed repeats. This high-quality genome provides a valuable resource for understanding the ecology, genetics, and evolution of F. intonsa, as well as for controlling thrips pests.
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Affiliation(s)
- Wei Song
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China
| | - Jia-Xu Wang
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China
- Beijing Key Laboratory for Forest Pests Control, Beijing Forestry University, Beijing, 100083, China
| | - Li-Jun Cao
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China
| | - Jin-Cui Chen
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China
| | - Wen-Xue Bao
- College of Forestry, Inner Mongolia Agricultural University, Hohhot, 010019, China
| | - Min Chen
- Beijing Key Laboratory for Forest Pests Control, Beijing Forestry University, Beijing, 100083, China
| | - Shu-Jun Wei
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
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Ataide LMS, Vargas G, Velazquez-Hernandez Y, Reyes-Arauz I, Villamarin P, Canon MA, Yang X, Riley SS, Revynthi AM. Efficacy of Conventional and Biorational Insecticides against the Invasive Pest Thrips parvispinus (Thysanoptera: Thripidae) under Containment Conditions. INSECTS 2024; 15:48. [PMID: 38249054 PMCID: PMC10816096 DOI: 10.3390/insects15010048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 01/08/2024] [Accepted: 01/09/2024] [Indexed: 01/23/2024]
Abstract
In 2020, the invasive Thrips parvispinus (Karny) was first detected in Florida, United States. In response to the implemented regulatory restrictions, we conducted laboratory experiments under containment conditions. Thrips larvae and adults were exposed to 32 products (conventional and biorational insecticides) either directly or indirectly. Direct exposure was performed using a Spray Potter Tower, while indirect exposure was conducted by evaluating residue toxicity against the thrips. Water served as a control. We assessed mortality and leaf-feeding damage 48 h post-treatment. Among the conventional insecticides, chlorfenapyr, sulfoxaflor-spinetoram, and spinosad caused high mortality across all stages in both direct and residue toxicity assays. Pyridalyl, acetamiprid, tolfenpyrad, cyclaniliprole-flonicamid, acephate, novaluron, abamectin, cyantraniliprole, imidacloprid, cyclaniliprole, spirotetramat, and carbaryl displayed moderate toxicity, affecting at least two stages in either exposure route. Additionally, chlorfenapyr, spinosad, sulfoxaflor-spinetoram, pyridalyl, acetamiprid, cyclaniliprole, cyclaniliprole-flonicamid, abamectin, and acephate inhibited larvae and adult's leaf-feeding damage in both direct and residue toxicity assays. Regarding biorational insecticides, mineral oil (3%) and sesame oil caused the highest mortality and lowest leaf-feeding damage. Greenhouse evaluations of spinosad, chlorfenapyr, sulfoxaflor-spinetoram, and pyridalyl are recommended. Also, a rotation program incorporating these products, while considering different modes of action, is advised for ornamental growers to avoid resistance and to comply with regulations.
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Affiliation(s)
- Livia M. S. Ataide
- Tropical Research and Education Center, University of Florida, Homestead, FL 33031, USA; (Y.V.-H.); (I.R.-A.); (P.V.); (M.A.C.)
| | - German Vargas
- New York State Integrated Pest Management Program, Cornell University, Portland, NY 14769, USA;
| | - Yisell Velazquez-Hernandez
- Tropical Research and Education Center, University of Florida, Homestead, FL 33031, USA; (Y.V.-H.); (I.R.-A.); (P.V.); (M.A.C.)
| | - Isamar Reyes-Arauz
- Tropical Research and Education Center, University of Florida, Homestead, FL 33031, USA; (Y.V.-H.); (I.R.-A.); (P.V.); (M.A.C.)
| | - Paola Villamarin
- Tropical Research and Education Center, University of Florida, Homestead, FL 33031, USA; (Y.V.-H.); (I.R.-A.); (P.V.); (M.A.C.)
| | - Maria A. Canon
- Tropical Research and Education Center, University of Florida, Homestead, FL 33031, USA; (Y.V.-H.); (I.R.-A.); (P.V.); (M.A.C.)
| | - Xiangbing Yang
- United States Department of Agriculture, Agricultural Research Service, Subtropical Horticulture Research Station, Miami, FL 33158, USA;
| | - Simon S. Riley
- Agronomy Department and IFAS Statistical Consulting Unit, University of Florida, Gainesville, FL 32611, USA;
| | - Alexandra M. Revynthi
- Tropical Research and Education Center, University of Florida, Homestead, FL 33031, USA; (Y.V.-H.); (I.R.-A.); (P.V.); (M.A.C.)
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Khan F, Kim K, Sung J, Lim H, Kim SG, Choi MY, Kim Y. A novel physiological function of pheromone biosynthesis-activating neuropeptide in production of aggregation pheromone. Sci Rep 2023; 13:5551. [PMID: 37019976 PMCID: PMC10076286 DOI: 10.1038/s41598-023-32833-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Accepted: 04/03/2023] [Indexed: 04/07/2023] Open
Abstract
The western flower thrips, Frankliniella occidentalis, is an insect pest, and its aggregation pheromone (AP) plays a crucial role in the recruitment of both sexes. A novel pheromone biosynthesis-activating neuropeptide (PBAN)-like gene is encoded in F. occidentalis genome, but its physiological function has yet to be elucidated. This study hypothesized the physiological role played by PBAN in mediating AP production. AP has been known to be produced only by male adults in F. occidentalis. Surprisingly, our extraction of headspace volatiles contained two AP components in females as well as in males with similar composition. PBAN injection elevated the AP production whereas RNA interference (RNAi) of the gene expression suppressed the AP production in both sexes. A biosynthetic pathway to produce AP components were predicted and the enzymes catalyzing the main steps were confirmed in their expressions. Individual RNAi treatments of these genes significantly suppressed AP production. RNAi of PBAN gene downregulated the expressions of these biosynthesis-associated genes in both sexes. These results suggest that the novel neuropeptide acts as PBAN mediating AP production through stimulating its biosynthetic machinery in F. occidentalis.
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Affiliation(s)
- Falguni Khan
- Department of Plant Medicals, College of Life Sciences, Andong National University, Andong, 36720, Korea
| | - Keono Kim
- Department of Food Life Science, College of Life Sciences, Andong National University, Andong, 36720, Korea
| | - Jeehye Sung
- Department of Food Life Science, College of Life Sciences, Andong National University, Andong, 36720, Korea
| | - Hangah Lim
- Department of Biological Sciences, KAIST, Daejon, 34141, Korea
| | - Sang-Gyu Kim
- Department of Biological Sciences, KAIST, Daejon, 34141, Korea
| | - Man-Yeon Choi
- Horticultural Crops Research Unit, USADA-ARS, Corvalis, OR, 97330, USA
| | - Yonggyun Kim
- Department of Plant Medicals, College of Life Sciences, Andong National University, Andong, 36720, Korea.
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A push-pull strategy to control the western flower thrips, Frankliniella occidentalis, using alarm and aggregation pheromones. PLoS One 2023; 18:e0279646. [PMID: 36827422 PMCID: PMC9956899 DOI: 10.1371/journal.pone.0279646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2022] [Accepted: 12/12/2022] [Indexed: 02/26/2023] Open
Abstract
Since the first report in 1993 in Korea, the western flower thrips, Frankliniella occidentalis, has been found in various crops throughout the country. Although more than 20 different chemical insecticides are registered to control this insect pest, its outbreaks seriously damage crop yields, especially in greenhouses. This study developed a non-chemical technique to control F. occidentalis infesting hot peppers cultivated in greenhouses. The method was based on behavioral control using an alarm pheromone ("Push") to prevent the entry of the thrips into greenhouses and an aggregation pheromone ("Pull") for mass trapping inside the greenhouses. The greenhouse fences were treated with a wax formulation of the alarm pheromone and a yellow CAN trap covered with sticky material containing the aggregation pheromone was constructed and deployed inside the greenhouses. Field assay demonstrated the efficacy of the push-pull tactics by reducing thrips density in flowers of the hot peppers as well as in the monitoring traps. Especially, the enhanced mass trapping to the CAN trap compared to the conventional yellow sticky trap led to significant reduction in the thrips population. This novel push-pull technique would be applicable to effectively control F. occidentalis in field conditions.
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Comparison and Functional Analysis of Odorant-Binding Proteins and Chemosensory Proteins in Two Closely Related Thrips Species, Frankliniella occidentalis and Frankliniella intonsa (Thysanoptera: Thripidae) Based on Antennal Transcriptome Analysis. Int J Mol Sci 2022; 23:ijms232213900. [PMID: 36430376 PMCID: PMC9692942 DOI: 10.3390/ijms232213900] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Revised: 10/26/2022] [Accepted: 10/31/2022] [Indexed: 11/16/2022] Open
Abstract
Two closely related thrips species, Frankliniella occidentalis and Frankliniella intonsa, are important pests on agricultural and horticultural crops. They have several similarities, including occurrence patterns, host range, and aggregation pheromone compounds. However, there are very few reports about the chemosensory genes and olfactory mechanisms in these two species. To expand our knowledge of the thrips chemosensory system, we conducted antennal transcriptome analysis of two thrips species, and identified seven odorant-binding proteins (OBPs) and eight chemosensory proteins (CSPs) in F. occidentalis, as well as six OBPs and six CSPs in F. intonsa. OBPs and CSPs showed high sequence identity between the two thrips species. The RT-qPCR results showed that the orthologous genes FoccOBP1/3/4/5/6, FintOBP1/3/4/6, FoccCSP1/2/3, and FintCSP1/2 were highly expressed in male adults. Molecular docking results suggested that orthologous pairs FoccOBP4/FintOBP4, FoccOBP6/FintOBP6, and FoccCSP2/FintCSP2 might be involved in transporting the major aggregation pheromone compound neryl (S)-2-methylbutanoate, while orthologous pairs FoccOBP6/FintOBP6, FoccCSP2/FintCSP2, and FoccCSP3/FintCSP3 might be involved in transporting the minor aggregation pheromone compound (R)-lavandulyl acetate. These results will provide a fundamental basis for understanding the molecular mechanisms of pheromone reception in the two thrips species.
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Fu B, Tao M, Xue H, Jin H, Liu K, Qiu H, Yang S, Yang X, Gui L, Zhang Y, Gao Y. Spinetoram resistance drives interspecific competition between Megalurothrips usitatus and Frankliniella intonsa. PEST MANAGEMENT SCIENCE 2022; 78:2129-2140. [PMID: 35170208 DOI: 10.1002/ps.6839] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Revised: 02/08/2022] [Accepted: 02/16/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND Species displacement by the outcome of interspecific competition is of particular importance to pest management. Over the past decade, spinetoram has been extensively applied in control of the two closely related thrips Megalurothrips usitatus and Frankliniella intonsa worldwide, while whether its resistance is implicated in mediating interspecific interplay of the two thrips remains elusive to date. RESULTS Field population dynamics (from 2017 to 2019) demonstrated a trend toward displacement of F. intonsa by M. usitatus on cowpea crops, supporting an existing interspecific competition. Following exposure to spinetoram, M. usitatus became the predominate species, which suggests the use of spinetoram appears to be responsible for mediating interspecific interactions of the two thrips. Further annual and seasonal analysis (from 2016 to 2020) of field-evolved resistance dynamics revealed that M. usitatus developed remarkably higher resistance to spinetoram compared to that of F. intonsa, implying a close relationship between evolution of spinetoram resistance and their competitive interactions. After 12 generations of laboratory selection, resistance to spinetoram in M. usitatus and F. intonsa increased up to 64.50-fold and 28.33-fold, and the average realized heritability (h2 ) of resistance was calculated as 0.2550 and 0.1602, respectively. Interestingly, two-sex life table analysis showed that the spinetoram-resistant strain of F. intonsa exhibited existing fitness costs, but not the M. usitatus. These indicate that a rapid development of spinetoram resistance and the lack of associated fitness costs may be the mechanism underlying recent dominance of M. usitatus over F. intonsa. CONCLUSION Collectively, our results uncover the involvement of insecticide resistance in conferring displacement mechanism behind interspecific competition, providing a framework for understanding the significance of the evolutionary relationships among insects under ongoing changing environments. These findings also can be invaluable in proposing the most appropriate strategies for sustainable thrips control programs. © 2022 Society of Chemical Industry.
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Affiliation(s)
- Buli Fu
- Hubei Engineering Technology for Pest Forewarning and Management, College of Agriculture, Yangtze University, Jingzhou, China
- The Ministry of Agriculture and Rural Affairs Key Laboratory of Integrated Pest Management of Tropical Crops, Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
- Department of Plant Protection, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Min Tao
- Department of Plant Protection, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Hu Xue
- Hubei Engineering Technology for Pest Forewarning and Management, College of Agriculture, Yangtze University, Jingzhou, China
- Department of Plant Protection, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | | | - Kui Liu
- The Ministry of Agriculture and Rural Affairs Key Laboratory of Integrated Pest Management of Tropical Crops, Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
| | - Haiyan Qiu
- The Ministry of Agriculture and Rural Affairs Key Laboratory of Integrated Pest Management of Tropical Crops, Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
| | | | - Xin Yang
- Department of Plant Protection, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Lianyou Gui
- Hubei Engineering Technology for Pest Forewarning and Management, College of Agriculture, Yangtze University, Jingzhou, China
| | - Youjun Zhang
- Hubei Engineering Technology for Pest Forewarning and Management, College of Agriculture, Yangtze University, Jingzhou, China
- Department of Plant Protection, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Yulin Gao
- State Key Laboratory for Biology of Plant Diseases and Insect Pest, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
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