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Dhakal R, Neves ALA, Sapkota R, Khanal P, Ellegaard-Jensen L, Winding A, Hansen HH. Temporal dynamics of volatile fatty acids profile, methane production, and prokaryotic community in an in vitro rumen fermentation system fed with maize silage. Front Microbiol 2024; 15:1271599. [PMID: 38444805 PMCID: PMC10912478 DOI: 10.3389/fmicb.2024.1271599] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Accepted: 02/01/2024] [Indexed: 03/07/2024] Open
Abstract
Anaerobic in vitro fermentation is widely used to simulate rumen kinetics and study the microbiome and metabolite profiling in a controlled lab environment. However, a better understanding of the interplay between the temporal dynamics of fermentation kinetics, metabolic profiles, and microbial composition in in vitro rumen fermentation batch systems is required. To fill that knowledge gap, we conducted three in vitro rumen fermentations with maize silage as the substrate, monitoring total gas production (TGP), dry matter degradability (dDM), and methane (CH4) concentration at 6, 12, 24, 36, and 48 h in each fermentation. At each time point, we collected rumen fluid samples for microbiome analysis and volatile fatty acid (VFA) analysis. Amplicon sequencing of 16S rRNA genes (V4 region) was used to profile the prokaryotic community structure in the rumen during the fermentation process. As the fermentation time increased, dDM, TGP, VFA concentrations, CH4 concentration, and yield (mL CH4 per g DM at standard temperature and pressure (STP)) significantly increased. For the dependent variables, CH4 concentration and yield, as well as the independent variables TGP and dDM, polynomial equations were fitted. These equations explained over 85% of the data variability (R2 > 0.85) and suggest that TGP and dDM can be used as predictors to estimate CH4 production in rumen fermentation systems. Microbiome analysis revealed a dominance of Bacteroidota, Cyanobacteria, Desulfobacterota, Euryarchaeota, Fibrobacterota, Firmicutes, Patescibacteria, Proteobacteria, Spirochaetota, and Verrucomicrobiota. Significant temporal variations in Bacteroidota, Campylobacterota, Firmicutes, Proteobacteria, and Spirochaetota were detected. Estimates of alpha diversity based on species richness and the Shannon index showed no variation between fermentation time points. This study demonstrated that the in vitro fermentation characteristics of a given feed type (e.g., maize silage) can be predicted from a few parameters (CH4 concentration and yield, tVFA, acetic acid, and propionic acid) without running the actual in vitro trial if the rumen fluid is collected from similar donor cows. Although the dynamics of the rumen prokaryotes changed remarkably over time and in accordance with the fermentation kinetics, more time points between 0 and 24 h are required to provide more details about the microbial temporal dynamics at the onset of the fermentation.
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Affiliation(s)
- Rajan Dhakal
- Department of Veterinary and Animal Sciences, Production, Nutrition and Health, University of Copenhagen, Frederiksberg, Denmark
| | - André Luis Alves Neves
- Department of Veterinary and Animal Sciences, Production, Nutrition and Health, University of Copenhagen, Frederiksberg, Denmark
| | - Rumakanta Sapkota
- Department of Environmental Science, Aarhus University, Roskilde, Denmark
| | - Prabhat Khanal
- Faculty of Biosciences and Aquaculture, Nord University, Bodø, Norway
| | | | - Anne Winding
- Department of Environmental Science, Aarhus University, Roskilde, Denmark
| | - Hanne Helene Hansen
- Department of Veterinary and Animal Sciences, Production, Nutrition and Health, University of Copenhagen, Frederiksberg, Denmark
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Rojas-González AJ, Arriaga-Jordán CM, Sánchez-Torres JE, Mejía-Uribe LA, Rayas-Amor AA, Morales-Almaráz E. In vitro assessment of ruminal biohydrogenation of polyunsaturated fatty acids in diets with different types and levels of protected fat and diverse sources of fibre. Trop Anim Health Prod 2023; 56:28. [PMID: 38151553 DOI: 10.1007/s11250-023-03859-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Accepted: 12/07/2023] [Indexed: 12/29/2023]
Abstract
The objective was to assess the in vitro rumen fermentation characteristics, methane production, and biohydrogenation of unsaturated fatty acids of diets with two protected fat (PF) sources from soybean or linseed oil, two levels of PF (0 and 6%) and two forage sources (canola silage (CS) or alfalfa hay (AH)) in a factorial 2x2x2 completely randomised design. Only fatty acids content at final incubation was affected (P<0.05) by triple interaction, where C18:2 was highest with AH plus 6% soybean PF (4.41mg/g DM), while C18:3 was with CS plus 6% linseed oil protected (1.98mg/g DM). C18:2 cis-9 trans-11 had high concentration (308 mg/g DM; P<0.05) with AH plus 6% PF regardless PF type, and C18:1 trans-11 was higher with 6% PF than without PF (13.41 vs 7.89 mg/g DM). Cumulative methane production was not affected by treatments (0.9973 ± 0.1549 mmol/g DM; P>0.05). Gas production and in vitro NDF digestibility were lower with 6% PF of linseed than soybean (160.88 vs 150.97 ml; and 69.28vs 62.89 %, respectively P<0.05). With linseed PF the NH3-N concentration was highest in CS than AH (41.27 vs 27.95 mg/dL; P<0.05) but IVDMD had the opposite result (78.54 vs 85.04). In conclusion, although methane production was not affected and in vitro digestibility and gas production were reduced with linseed PF, the concentration of C18:3 and C18:1 trans-11 was increased, which could improve the lipid profile of milk. The negative effects on digestibility were less with AH than of CS regardless of PF type and level.
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Affiliation(s)
- Alberto Jorge Rojas-González
- Facultad de Medicina Veterinaria y Zootecnia, Departamento de Nutrición Animal, Universidad Autónoma del Estado de México, Campus UAEM El Cerrillo, El Cerrillo Piedras Blancas, CP 50295, Toluca, Estado de México, México
| | - Carlos Manuel Arriaga-Jordán
- Instituto de Ciencias Agropecuarias y Rurales (ICAR), Universidad Autónoma del Estado de México, Campus UAEM El Cerrillo, El Cerrillo Piedras Blancas, CP 50295, Toluca, Estado de México, México
| | - Juan Edrei Sánchez-Torres
- Facultad de Medicina Veterinaria y Zootecnia, Departamento de Nutrición Animal, Universidad Autónoma del Estado de México, Campus UAEM El Cerrillo, El Cerrillo Piedras Blancas, CP 50295, Toluca, Estado de México, México
| | - Luis Alberto Mejía-Uribe
- Facultad de Medicina Veterinaria y Zootecnia, Departamento de Nutrición Animal, Universidad Autónoma del Estado de México, Campus UAEM El Cerrillo, El Cerrillo Piedras Blancas, CP 50295, Toluca, Estado de México, México
| | - Adolfo Armando Rayas-Amor
- Departamento de Ciencias de la Alimentación, División de Ciencias Biológicas y de la Salud, Universidad Autónoma Metropolitana Unidad Lerma, Av. De las Garzas No. 10, Colonia El Panteón, 52005, Lerma, Estado de México, México
| | - Ernesto Morales-Almaráz
- Facultad de Medicina Veterinaria y Zootecnia, Departamento de Nutrición Animal, Universidad Autónoma del Estado de México, Campus UAEM El Cerrillo, El Cerrillo Piedras Blancas, CP 50295, Toluca, Estado de México, México.
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3
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Zhang B, Lin S, Moraes L, Firkins J, Hristov AN, Kebreab E, Janssen PH, Bannink A, Bayat AR, Crompton LA, Dijkstra J, Eugène MA, Kreuzer M, McGee M, Reynolds CK, Schwarm A, Yáñez-Ruiz DR, Yu Z. Methane prediction equations including genera of rumen bacteria as predictor variables improve prediction accuracy. Sci Rep 2023; 13:21305. [PMID: 38042941 PMCID: PMC10693554 DOI: 10.1038/s41598-023-48449-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Accepted: 11/27/2023] [Indexed: 12/04/2023] Open
Abstract
Methane (CH4) emissions from ruminants are of a significant environmental concern, necessitating accurate prediction for emission inventories. Existing models rely solely on dietary and host animal-related data, ignoring the predicting power of rumen microbiota, the source of CH4. To address this limitation, we developed novel CH4 prediction models incorporating rumen microbes as predictors, alongside animal- and feed-related predictors using four statistical/machine learning (ML) methods. These include random forest combined with boosting (RF-B), least absolute shrinkage and selection operator (LASSO), generalized linear mixed model with LASSO (glmmLasso), and smoothly clipped absolute deviation (SCAD) implemented on linear mixed models. With a sheep dataset (218 observations) of both animal data and rumen microbiota data (relative sequence abundance of 330 genera of rumen bacteria, archaea, protozoa, and fungi), we developed linear mixed models to predict CH4 production (g CH4/animal·d, ANIM-B models) and CH4 yield (g CH4/kg of dry matter intake, DMI-B models). We also developed models solely based on animal-related data. Prediction performance was evaluated 200 times with random data splits, while fitting performance was assessed without data splitting. The inclusion of microbial predictors improved the models, as indicated by decreased root mean square prediction error (RMSPE) and mean absolute error (MAE), and increased Lin's concordance correlation coefficient (CCC). Both glmmLasso and SCAD reduced the Akaike information criterion (AIC) and Bayesian information criterion (BIC) for both the ANIM-B and the DMI-B models, while the other two ML methods had mixed outcomes. By balancing prediction performance and fitting performance, we obtained one ANIM-B model (containing 10 genera of bacteria and 3 animal data) fitted using glmmLasso and one DMI-B model (5 genera of bacteria and 1 animal datum) fitted using SCAD. This study highlights the importance of incorporating rumen microbiota data in CH4 prediction models to enhance accuracy and robustness. Additionally, ML methods facilitate the selection of microbial predictors from high-dimensional metataxonomic data of the rumen microbiota without overfitting. Moreover, the identified microbial predictors can serve as biomarkers of CH4 emissions from sheep, providing valuable insights for future research and mitigation strategies.
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Affiliation(s)
- Boyang Zhang
- Department of Animal Sciences, The Ohio State University, Columbus, OH, 43210, USA
| | - Shili Lin
- Department of Statistics, The Ohio State University, 2029 Fyffe Road, Columbus, OH, 43210, USA.
| | - Luis Moraes
- Department of Animal Sciences, The Ohio State University, Columbus, OH, 43210, USA
- Consultoria, Piracicaba, SP, Brazil
| | - Jeffrey Firkins
- Department of Animal Sciences, The Ohio State University, Columbus, OH, 43210, USA
| | - Alexander N Hristov
- Department of Animal Science, The Pennsylvania State University, University Park, PA, USA
| | - Ermias Kebreab
- Department of Animal Science, University of California, Davis, CA, USA
| | - Peter H Janssen
- AgResearch Limited, Grasslands Research Centre, Palmerston North, 4442, New Zealand
| | - André Bannink
- Wageningen Livestock Research, Wageningen University & Research, Wageningen, The Netherlands
| | - Alireza R Bayat
- Milk Production, Production Systems, Natural Resources Institute Finland (Luke), 31600, Jokioinen, Finland
| | - Les A Crompton
- School of Agriculture, Policy, and Development, University of Reading, Reading, UK
| | - Jan Dijkstra
- Animal Nutrition Group, Wageningen University & Research, Wageningen, The Netherlands
| | - Maguy A Eugène
- INRAE UMR Herbivores, VetAgro Sup, Université Clermont Auvergne, Saint-Genès-Champanelle, France
| | - Michael Kreuzer
- Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland
| | - Mark McGee
- Teagasc, AGRIC, Grange, Dunsany., CO., Meath, Ireland
| | | | - Angela Schwarm
- Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, Ås, Norway
| | | | - Zhongtang Yu
- Department of Animal Sciences, The Ohio State University, Columbus, OH, 43210, USA.
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Effect of Unsaturated Fatty Acid Ratio In Vitro on Rumen Fermentation, Methane Concentration, and Microbial Profile. FERMENTATION-BASEL 2022. [DOI: 10.3390/fermentation8100540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
It is well known that dairy cows are fed diets with high fat content, which can adversely affect rumen fermentation. However, whether the effects of high fat content on rumen fermentation are related to the composition of fatty acids (FA) is for further study. We explored the effects of unsaturated fatty acid (UFA) ratios in vitro on rumen, methane concentration and microbial composition under the same fat levels. The experiment included a low-unsaturated group (LU, UFA proportion: 42.8%), a medium-unsaturated group (MU, UFA proportion: 56.9%), and a high-unsaturated group (HU, UFA proportion: 70.9%). The incubation fluid pH and NH3-N levels were not significantly different in the three groups. Total volatile fatty acid (TVFA), acetate, propionate, butyrate, and valerate in the MU group had a decreased trend compared to the LU group (0.05 < p < 0.1), and no difference was found in other volatile fatty acids (VFAs) among the three groups. Furthermore, gas production kinetic parameters among the three groups did not differ significantly. The LU group’s CH4 concentration was significantly higher than the HU group (p < 0.05). The CO2 concentration in the LU group was also significantly higher than the MU and LU groups (p < 0.05). Additionally, 16S rRNA microbial sequencing results showed that the Shannon diversity value significantly increased in the MU group (p < 0.05) compared to the LU group. Other alpha diversity indices (Chao 1, observed species, and ACE) did not differ among the three groups. The increased proportion of UFA significantly decreased the relative abundance of Succinivibrionaceae_UCG_001 and Fibrobacter (p < 0.05). Meanwhile, the multiple Lachnospiraceae bacteria significantly increased in the MU group (p < 0.05). Overall, our findings indicated that the microbial community in the incubation system could be affected by elevating proportions of UFA, affecting the yield of VFA, whereas the CH4 concentration was reduced.
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Jia L, Wu J, Lei Y, Kong F, Zhang R, Sun J, Wang L, Li Z, Shi J, Wang Y, Wei Y, Zhang K, Lei Z. Oregano Essential Oils Mediated Intestinal Microbiota and Metabolites and Improved Growth Performance and Intestinal Barrier Function in Sheep. Front Immunol 2022; 13:908015. [PMID: 35903106 PMCID: PMC9314563 DOI: 10.3389/fimmu.2022.908015] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Accepted: 06/20/2022] [Indexed: 11/17/2022] Open
Abstract
With the increased demand for safe and sustainable alternatives to growth promoting antibiotics in the livestock industry, oregano essential oils (OEO) and Lactobacillus reuteri (LR) have been examined as alternatives to antibiotics for growth promotion and to improve animal health and performance. However, the mechanism underlying the OEO and LR mediation of sheep growth remains unknown. In this study, 16S rRNA gene sequencing and untargeted metabolomics were used to determine the role of the gut microbiota in the growth improvements observed. The potential modulating roles of intestinal microbial metabolites of OEO and LR to intestinal health were systematically explored as well. It was observed that both OEO and LR had greater average daily gain (ADG) and lower F/G ratio. Furthermore, OEO also appeared to have produced a greater amylase enzyme activity and mucin gene expression in the jejunal mucosa. It was also observed that OEO reduced serum IL-2 and TNF-β as well as mRNA levels of NF-κB p65, toll-like receptor-4 (TLR-4), and IL-6 in the jejunal mucosa. Moreover, dietary OEO supplementation increased the abundances of Ruminococcus, Bifidobacterium and Enterococcus, while the relative abundances of Succiniclasticum, Marvinbryantia and Streptococcus were enriched in LR group. Spearman’s correlation analysis revealed that the abundances of Bifidobacterium, Ruminococcus and Enterococcus were positively correlated with the mRNA expression of mucins. Moreover, the relative abundance of Enterococcus was positively correlated with amylase activity. Metabolomics analysis indicated that OEO and LR increased the levels of indole acetaldehyde and indole-3-acetic acid through the tryptophan metabolism pathway. It was observed that LR also decreased the inflammatory metabolites including tryptamine and 5-hydroxyindole-3-acetic acid. Collectively, these results suggested that OEO exerted a beneficial effect on growth performance and the mucosal barrier, affected tryptophan metabolism and improved the intestinal microbiota of sheep.
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Affiliation(s)
- Li Jia
- College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China
| | - Jianping Wu
- Institute of Rural Development, Northwest Normal University, Lanzhou, China
| | - Yu Lei
- Key Laboratory of Animal Genetics, Breeding and Reproduction of Shanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, China
| | - Fanyun Kong
- College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China
| | - Rui Zhang
- College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China
| | - Jianxiang Sun
- College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China
| | - Liao Wang
- College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China
| | - Zemin Li
- College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China
| | - Jinping Shi
- College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China
| | - Ying Wang
- College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China
| | - Yubing Wei
- The Animal Husbandry and Veterinary Station in Pingshan Lake Mongolian Township of Ganzhou District, Zhangye, China
| | - Ke Zhang
- Key Laboratory of Animal Genetics, Breeding and Reproduction of Shanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, China
| | - Zhaomin Lei
- College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China
- *Correspondence: Zhaomin Lei,
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6
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Aoki H, Sato Y, Katsumata S, Yamauchi M, Yamanaka S, Kishi Y, Oishi K, Hirooka H, Kumagai H. Effects of calcium salt of linseed oil fatty acid with different oil adsorbents on in vitro gas production and ruminal fermentation characteristics. Anim Sci J 2022; 93:e13707. [PMID: 35289034 DOI: 10.1111/asj.13707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 01/24/2022] [Accepted: 02/16/2022] [Indexed: 11/29/2022]
Abstract
We investigated the effects of supplementary calcium salt of fatty acid (CSFA) from linseed oil with different oil adsorbents on in vitro gas production and rumen fermentation characteristics in barley substrate condition. A non-supplementation treatment (CONT) and treatments of six products, CSFA without oil adsorbent (2.1 fatty acid/Ca molar ratio) and CSFAs with silica gel, zeolite, bentonite, diatomite, and vermiculite (2.8 fatty acid/Ca molar ratio), were prepared. The supplementary 2% and 4% CSFA with silica gel (+S) in the substrate reduced CH4 production 56% and 79%, respectively, compared with that in CONT (p < 0.01). The products, except for +S, did not decrease CH4 production. The dry matter (DM) disappearance in CSFAs with oil adsorbents was lower than that in the CSFA without oil adsorbent (74.8%-77.3% vs. 79.3%, p < 0.01), and crude protein (CP) disappearance in +S supplementation was lower than that of the other products (53.5% vs. 57.2%-59.1%, p < 0.01). The +S supplementation decreased acetate proportion and increased propionate proportion (p < 0.01). Our study indicated that although the disappearance of DM and CP might decrease, using silica gel as an oil adsorbent of linseed oil calcium salt with high fatty acid/Ca molar ratio has the potential to mitigate CH4 emissions from ruminants.
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Affiliation(s)
- Hirotatsu Aoki
- Laboratory of Animal Husbandry Resources, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan
| | - Yoshiaki Sato
- Laboratory of Animal Husbandry Resources, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan
| | - Sachi Katsumata
- Laboratory of Animal Husbandry Resources, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan
| | - Momo Yamauchi
- Laboratory of Animal Husbandry Resources, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan
| | - Sayaka Yamanaka
- Laboratory of Animal Husbandry Resources, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan
| | - Yousuke Kishi
- Research & Development Department, Taiyo Yushi Corp., Yokohama, Japan
| | - Kazato Oishi
- Laboratory of Animal Husbandry Resources, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan
| | - Hiroyuki Hirooka
- Laboratory of Animal Husbandry Resources, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan
| | - Hajime Kumagai
- Laboratory of Animal Husbandry Resources, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan
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7
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Sato Y, Takebe H, Tominaga K, Oishi K, Kumagai H, Yoshida T, Hirooka H. Taxonomic and functional characterization of the rumen microbiome of Japanese Black cattle revealed by 16S rRNA gene amplicon and metagenome shotgun sequencing. FEMS Microbiol Ecol 2021; 97:6447535. [PMID: 34864967 DOI: 10.1093/femsec/fiab152] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Accepted: 11/28/2021] [Indexed: 01/04/2023] Open
Abstract
This study aimed to determine the taxonomic and functional characteristics of the Japanese Black (JB) steer rumen microbiome. The rumen microbiomes of six JB steers (age 14.7 ± 1.44 months) and six JB sires × Holstein dams crossbred (F1) steers (age 11.1 ± 0.39 months), fed the same diet, were evaluated. Based on 16S rRNA gene sequencing, the beta diversity revealed differences in microbial community structures between the JB and F1 rumen. Shotgun sequencing showed that Fibrobacter succinogenes and two Ruminococcus spp., which are related to cellulose degradation were relatively more abundant in the JB steer rumen than in the F1 rumen. Furthermore, the 16S rRNA gene copy number of F. succinogenes was significantly higher in the JB steer rumen than in the F1 rumen according to quantitative real-time polymerase chain reaction analysis. Genes encoding the enzymes that accelerate cellulose degradation and those associated with hemicellulose degradation were enriched in the JB steer rumen. Although Prevotella spp. were predominant both in the JB and F1 rumen, the genes encoding carbohydrate-active enzymes of Prevotella spp. may differ between JB and F1.
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Affiliation(s)
- Yoshiaki Sato
- Laboratory of Animal Husbandry Resources, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake, Kyoto 606-8502, Japan
| | - Hiroaki Takebe
- Laboratory of Marine Microbiology, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake, Kyoto 606-8502, Japan
| | - Kento Tominaga
- Laboratory of Marine Microbiology, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake, Kyoto 606-8502, Japan
| | - Kazato Oishi
- Laboratory of Animal Husbandry Resources, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake, Kyoto 606-8502, Japan
| | - Hajime Kumagai
- Laboratory of Animal Husbandry Resources, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake, Kyoto 606-8502, Japan
| | - Takashi Yoshida
- Laboratory of Marine Microbiology, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake, Kyoto 606-8502, Japan
| | - Hiroyuki Hirooka
- Laboratory of Animal Husbandry Resources, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake, Kyoto 606-8502, Japan
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8
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Kong F, Lu N, Liu Y, Zhang S, Jiang H, Wang H, Wang W, Li S. Aspergillus oryzae and Aspergillus niger Co-Cultivation Extract Affects In Vitro Degradation, Fermentation Characteristics, and Bacterial Composition in a Diet-Specific Manner. Animals (Basel) 2021; 11:1248. [PMID: 33926015 PMCID: PMC8145302 DOI: 10.3390/ani11051248] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2021] [Revised: 04/22/2021] [Accepted: 04/23/2021] [Indexed: 12/25/2022] Open
Abstract
AOAN may provide enzymes to improve the digestibility of feeds and enhance rumen fermentation. This study determined the effects of AOAN on digestibility, fermentation characteristics, and bacterial composition using in vitro gas recording fermentation system. A total of 30 mg of AOAN was supplemented into 500 mg of TMR, corn silage, oat hay, and alfalfa hay. Fermentation parameters and bacterial communities were determined after 48 h fermentation, and digestibility was determined after 7, 24, 30, and 48 h fermentation. Gas production and dry matter (DM), crude protein (CP), neutral detergent fiber (NDF), and acid detergent fiber (ADF) digestibility were significantly increased by AOAN supplementation at 48 h (p < 0.05), except for digestibility of CP of the TMR (p > 0.05). AOAN increased starch digestibility in corn silage (p < 0.05) and tended to increase that in TMR (0.05 < p < 0.10). AOAN supplementation increased total volatile fatty acid production (p < 0.05). The molar proportions of acetate and acetate to propionate ratio of oat hay and alfalfa hay were increased (p < 0.05). The 16S rRNA analysis revealed that the microbial richness of TMR and oat hay, and microbial evenness of TMR were increased (p < 0.05). AOAN did not affect the α diversity, β diversity, and bacterial composition of the corn silage. The relative abundance of Prevotella was increased and Ruminococcus was decreased in TMR, oat hay, and alfalfa hay. In conclusion, results suggest that AOAN has the potential to improve the utilization of diets differently, including providing enzymes with changing microbiota (TMR, oat hay, and alfalfa hay) or providing enzymes alone (corn silage).
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Affiliation(s)
- Fanlin Kong
- Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, The State Key Laboratory of Animal Nutrition, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China; (F.K.); (N.L.); (Y.L.); (S.Z.)
| | - Na Lu
- Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, The State Key Laboratory of Animal Nutrition, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China; (F.K.); (N.L.); (Y.L.); (S.Z.)
| | - Yanfang Liu
- Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, The State Key Laboratory of Animal Nutrition, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China; (F.K.); (N.L.); (Y.L.); (S.Z.)
| | - Shu Zhang
- Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, The State Key Laboratory of Animal Nutrition, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China; (F.K.); (N.L.); (Y.L.); (S.Z.)
| | - Hongqin Jiang
- China Representative Office, Ascor Chimici S.R.L., 201199 Bologna, Italy; (H.J.); (H.W.)
| | - Haomin Wang
- China Representative Office, Ascor Chimici S.R.L., 201199 Bologna, Italy; (H.J.); (H.W.)
| | - Wei Wang
- Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, The State Key Laboratory of Animal Nutrition, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China; (F.K.); (N.L.); (Y.L.); (S.Z.)
| | - Shengli Li
- Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, The State Key Laboratory of Animal Nutrition, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China; (F.K.); (N.L.); (Y.L.); (S.Z.)
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