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Buasriyot P, Sassi FDMC, Donbundit N, Supiwong W, Kaewsri S, Jumrusthanasan S, Seetapan K, Pinthong K, Tanomtong A, Yanukun K, Muanglen N, Liehr T, de Bello Cioffi M. Comparative karyotypic study of fifteen cyprinids (Cyprinidae, Cyprininae) species. An insight into the chromosomal evolution of the tribe Systomini. PLoS One 2024; 19:e0305828. [PMID: 39024404 PMCID: PMC11257272 DOI: 10.1371/journal.pone.0305828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Accepted: 06/05/2024] [Indexed: 07/20/2024] Open
Abstract
The family Cyprinidae is the largest freshwater fish group with 377 genera and over 3,000 described species. However, this group of fish has very limited cytogenetics and advanced molecular cytogenetics information. Therefore, in this study the karyotypes and other chromosomal characteristics of 15 species in the tribe Systomini (Cyprininae) were examined using Ag-NOR staining along with fluorescence in situ hybridization (5S and 18S rDNA). All species share a similar karyotype (2n = 50; NF = 88-100) in both sexes and no differentiated sex chromosome was observed. Chromosomes bearing NOR sites ranged from one to four pairs among the species, mostly mapped adjacent to telomeres in the short arms of distinct pairs in all analyzed species. This difference indicates an extensive rearrangement of chromosomes including genomic differences. The use of the 5S and 18S rDNA probe confirmed the Ag-NOR sites interstitially located in the telomeric regions of distinct chromosomes, characterizing an interspecies variation of these sites. In most of its analyzed species, the signals of 18S rDNA probe corresponded to the Ag-NOR regions, except in Barbonymus altus, B. gonionotus, B. schwanenfeldii and Puntius brevis having these signals on the same as Ag-NOR regions and other sites.
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Affiliation(s)
- Phichaya Buasriyot
- Animals Cytogenetics Research Group, Department of Biology, Faculty of Science, Khon Kaen University, Muang, Khon Kaen, Thailand
| | | | - Nuttasuda Donbundit
- Animals Cytogenetics Research Group, Department of Biology, Faculty of Science, Khon Kaen University, Muang, Khon Kaen, Thailand
| | - Weerayuth Supiwong
- Faculty of Interdisciplinary Studies, Nong Khai Campus, Khon Kaen University, Muang, Nong Khai, Thailand
| | - Sarawut Kaewsri
- Biology Program, Department of Science, Faculty of Science, Buriram Rajabhat University, Muang, Buriram, Thailand
| | - Sarun Jumrusthanasan
- Biology Program, Department of Science, Faculty of Science, Buriram Rajabhat University, Muang, Buriram, Thailand
| | - Kriengkrai Seetapan
- School of Agriculture and Natural Resources, University of Phayao, Muang District, Phayao Province, Thailand
| | - Krit Pinthong
- Department of Fundamental Science, Faculty of Science and Technology, Surindra Rajabhat University, Muang, Surin, Thailand
| | - Alongklod Tanomtong
- Animals Cytogenetics Research Group, Department of Biology, Faculty of Science, Khon Kaen University, Muang, Khon Kaen, Thailand
| | - Klodthida Yanukun
- Animals Cytogenetics Research Group, Department of Biology, Faculty of Science, Khon Kaen University, Muang, Khon Kaen, Thailand
| | - Nawarat Muanglen
- Department 0f Fisheries, Faculty of Agricultural Technology, Sakon Nakhon Rajabhat University, Muang, Sakon Nakhon, Thailand
| | - Thomas Liehr
- Institute of Human Genetics, University Hospital Jena, Friedrich Schiller University, Jena, Germany
| | - Marcelo de Bello Cioffi
- Departamento de Genética e Evolução, Universidade Federal de São Carlos (UFSCar), São Carlos, SP, Brazil
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Chaiyasan P, Supiwong W, Saenjundaeng P, Seetapan K, Pinmongkhonkul S, Tanomtong A. A Report on Classical Cytogenetics of Hihgfin Barb Fish, <i>Cyclocheilichthys armatus</i> (Cypriniformes, Cyprinidae). CYTOLOGIA 2018. [DOI: 10.1508/cytologia.83.149] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Affiliation(s)
- Patcharaporn Chaiyasan
- Toxic Substance in Livestock and Aquatic Animals Research Group, Department of Biology, Faculty of Science, Khon Kaen University
| | | | | | | | | | - Alongklod Tanomtong
- Toxic Substance in Livestock and Aquatic Animals Research Group, Department of Biology, Faculty of Science, Khon Kaen University
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Chang CH, Li F, Shao KT, Lin YS, Morosawa T, Kim S, Koo H, Kim W, Lee JS, He S, Smith C, Reichard M, Miya M, Sado T, Uehara K, Lavoué S, Chen WJ, Mayden RL. Phylogenetic relationships of Acheilognathidae (Cypriniformes: Cyprinoidea) as revealed from evidence of both nuclear and mitochondrial gene sequence variation: evidence for necessary taxonomic revision in the family and the identification of cryptic species. Mol Phylogenet Evol 2014; 81:182-94. [PMID: 25238947 DOI: 10.1016/j.ympev.2014.08.026] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2014] [Revised: 08/28/2014] [Accepted: 08/29/2014] [Indexed: 10/24/2022]
Abstract
Bitterlings are relatively small cypriniform species and extremely interesting evolutionarily due to their unusual reproductive behaviors and their coevolutionary relationships with freshwater mussels. As a group, they have attracted a great deal of attention in biological studies. Understanding the origin and evolution of their mating system demands a well-corroborated hypothesis of their evolutionary relationships. In this study, we provide the most comprehensive phylogenetic reconstruction of species relationships of the group based on partitioned maximum likelihood and Bayesian methods using DNA sequence variation of nuclear and mitochondrial genes on 41 species, several subspecies and three undescribed species. Our findings support the monophyly of the Acheilognathidae. Two of the three currently recognized genera are not monophyletic and the family can be subdivided into six clades. These clades are further regarded as genera based on both their phylogenetic relationships and a reappraisal of morphological characters. We present a revised classification for the Acheilognathidae with five genera/lineages: Rhodeus, Acheilognathus (new constitution), Tanakia (new constitution), Paratanakia gen. nov., and Pseudorhodeus gen. nov. and an unnamed clade containing five species currently referred to as "Acheilognathus". Gene trees of several bitterling species indicate that the taxa are not monophyletic. This result highlights a potentially dramatic underestimation of species diversity in this family. Using our new phylogenetic framework, we discuss the evolution of the Acheilognathidae relative to classification, taxonomy and biogeography.
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Affiliation(s)
- Chia-Hao Chang
- Biodiversity Research Center, Academia Sinica, Taipei 11529, Taiwan; Department of Biological Science and Technology, National Chiao Tung University, Hsinchu 30068, Taiwan; Department of Biology, Saint Louis University, St. Louis, MO 63103, USA
| | - Fan Li
- Department of Oceanography, National Sun Yet-sen University, Kaohsiung 80424, Taiwan; Institute of Biodiversity Science, Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Fudan University, Shanghai 200433, China
| | - Kwang-Tsao Shao
- Biodiversity Research Center, Academia Sinica, Taipei 11529, Taiwan
| | - Yeong-Shin Lin
- Department of Biological Science and Technology, National Chiao Tung University, Hsinchu 30068, Taiwan; Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 30068, Taiwan
| | | | - Sungmin Kim
- School of Biological Sciences, Seoul National University, Seoul 151-747, Republic of Korea
| | - Hyeyoung Koo
- Department of Biological Science, Sangji University, Wonju 220-702, Republic of Korea
| | - Won Kim
- School of Biological Sciences, Seoul National University, Seoul 151-747, Republic of Korea
| | - Jae-Seong Lee
- Department of Biological Sciences, Sungkyunkwan University, Suwon 440-746, Republic of Korea
| | - Shunping He
- Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
| | - Carl Smith
- School of Biology, University of St Andrews, St Andrews, Fife KY16 8LB, UK; Institute of Vertebrate Biology, Academy of Sciences of the Czech Republic, Květná 8, 603 65 Brno, Czech Republic
| | - Martin Reichard
- Institute of Vertebrate Biology, Academy of Sciences of the Czech Republic, Květná 8, 603 65 Brno, Czech Republic
| | - Masaki Miya
- Natural History Museum & Institute, Chiba 260-8682, Japan
| | - Tetsuya Sado
- Natural History Museum & Institute, Chiba 260-8682, Japan
| | - Kazuhiko Uehara
- Aquatic Life Conservation Research Center, Research Institute of Environment, Agriculture and Fisheries, Osaka 572-0088, Japan
| | - Sébastien Lavoué
- Institute of Oceanography, National Taiwan University, Taipei 10617, Taiwan
| | - Wei-Jen Chen
- Institute of Oceanography, National Taiwan University, Taipei 10617, Taiwan.
| | - Richard L Mayden
- Department of Biology, Saint Louis University, St. Louis, MO 63103, USA
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Libertini A, Sola L, Rampin M, Rossi AR, Iijima K, Ueda T. Classical and molecular cytogenetic characterization of allochthonous European bitterling Rhodeus amarus (Cyprinidae, Acheilognathinae) from Northern Italy. Genes Genet Syst 2009; 83:417-22. [PMID: 19168992 DOI: 10.1266/ggs.83.417] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
A cytogenetical study was carried out on 34 specimens of the European bitterling Rhodeus amarus (Teleostei: Cyprinidae, Acheilognathinae) from four rivers of the Venice district (NE Italy). This allochthonous fish species was accidentally introduced in the North-East of Italy about 20 years ago and is now rapidly spreading all over the rivers of the Northern part of the country. All the studied specimens are characterised by the same karyotype (2n = 48: 8M + 20SM + 20ST), i.e., the typical one of the native populations of the species. However, a polymorphism in the number of NOR bearing chromosomes has been found. In fact, in addition to the main species-specific NORs, on the short arms of chromosome pair 7, two to five additional 18S rDNA sites have been revealed by FISH in different specimens. Sequential staining with silver nitrate, chromomycin A(3) and DAPI revealed that most of the additional sites are inactive and CMA(3)-positive. Data herein reported confirm that in spite of an overall morphological karyological conservativeness, significant differences for the finer cytogenetic features can be found within the Acheilognathinae with the 2n = 48 and NF = 76 karyotype.
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Affiliation(s)
- Angelo Libertini
- Institute of Marine Sciences, National Council for Research, Venice, Italy
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