1
|
Li H, Chenglin G, Yae Z, Wanyu Z, Rong C. Identification and genetic characterisatin of cathepsin L in Demodex. EXPERIMENTAL & APPLIED ACAROLOGY 2023; 89:329-344. [PMID: 37058174 DOI: 10.1007/s10493-023-00789-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2022] [Accepted: 03/23/2023] [Indexed: 05/09/2023]
Abstract
Owing to difficulties in obtaining functional gene sequences, molecular pathogenic mechanisms in Demodex have been understudied. In this study, overlap extension PCR was used to obtain the sequences of cathepsin L (CatL), a pathogenicity-related gene, to provide a foundation for subsequent functional research. Demodex folliculorum and Demodex brevis mites were obtained from the face skin of Chinese individuals, and Demodex canis mites were isolated from the skin lesions of a dog. RNA was extracted and used to synthesise double-stranded cDNA. PCR amplification, cloning, sequencing, and bioinformatics analysis of CatL were performed. CatL gene sequences of 1005, 1008, and 1008 bp were successfully amplified for D. brevis, D. folliculorum, and D. canis, respectively. These sequences showed 99.9 or 100% identity with templates previously obtained by RNA-seq. The Maximum Likelihood (ML) phylogenetic tree showed that D. folliculorum clustered with D. canis first, then with D. brevis, and finally with other Acariformes mite species. The three Demodex species had nine similar motifs to those of Sarcoptes scabies, Dermatophagoides pteronyssinus, and Dermatophagoides farinae, and motifs 10-13 were valuable for identification. CatL proteins of Demodex species were predicted to be approximately 38 kDa, be located in lysosomes, have a signal peptide but no transmembrane region, and have two functional domains, I29 and Pept_C1. However, interspecific differences were observed in secondary and tertiary protein structures. In conclusion, we successfully obtained CatL sequences of three Demodex species by overlap extension PCR, which creates conditions for further pathogenic mechanism studies.
Collapse
Affiliation(s)
- Hu Li
- Department of Pathogenic Biology and Immunology, School of Basic Medical Sciences, Xi'an Jiaotong University Health Science Center, No.76 Yanta West Road, Xi'an, 710061, Shaanxi Province, China
| | - Guan Chenglin
- Department of Pathogenic Biology and Immunology, School of Basic Medical Sciences, Xi'an Jiaotong University Health Science Center, No.76 Yanta West Road, Xi'an, 710061, Shaanxi Province, China
| | - Zhao Yae
- Department of Pathogenic Biology and Immunology, School of Basic Medical Sciences, Xi'an Jiaotong University Health Science Center, No.76 Yanta West Road, Xi'an, 710061, Shaanxi Province, China.
| | - Zhang Wanyu
- Department of Pathogenic Biology and Immunology, School of Basic Medical Sciences, Xi'an Jiaotong University Health Science Center, No.76 Yanta West Road, Xi'an, 710061, Shaanxi Province, China
| | - Chai Rong
- Department of Pathogenic Biology and Immunology, School of Basic Medical Sciences, Xi'an Jiaotong University Health Science Center, No.76 Yanta West Road, Xi'an, 710061, Shaanxi Province, China
| |
Collapse
|
2
|
Fang Y, Sun M, Fang Y, Zuo Z, Liu L, Chu L, Ding L, Hu C, Li F, Han R, Xia X, Zhou S, Sun E. Complete mitochondrial genomes of Thyreophagus entomophagus and Acarus siro (Sarcoptiformes: Astigmatina) provide insight into mitogenome features, evolution, and phylogeny among Acaroidea mites. EXPERIMENTAL & APPLIED ACAROLOGY 2022; 87:219-233. [PMID: 36255591 DOI: 10.1007/s10493-022-00727-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2022] [Accepted: 06/23/2022] [Indexed: 05/24/2023]
Abstract
Mites from the Acaroidea (Sarcoptiformes: Astigmatina) are important pests of various stored products, posing potential threats to preserved foods. In addition, mites can cause allergic diseases. Complete mitochondrial genomes (mitogenomes) are valuable resources for different research fields, including comparative genomics, molecular evolutionary analysis, and phylogenetic inference. We sequenced and annotated the complete mitogenomes of Thyreophagus entomophagus and Acarus siro. A comparative analysis was made between mitogenomic sequences from 10 species representing nine genera within Acaroidea. The mitogenomes of T. entomophagus and A. siro contained 37 genes, including 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), two ribosomal RNAs (rRNAs), and one control region. In Acaroidea species, mitogenomes have highly conserved gene size and order, and codon usage. Among Acaroidea mites, most PCGs were found to be under purifying selection, implying that most PCGs might have evolved slowly. Our findings showed that nad4 evolved most rapidly, whereas cox1 and cox3 evolved most slowly. The evolutionary rates of Acaroidea vary considerably across families. In addition, selection analyses were also performed in 23 astigmatid mite species, and the evolutionary rate of the same genes in different superfamilies exhibited large differences. Phylogenetic results are mostly consistent with those identified by previous phylogenetic studies on astigmatid mites. The monophyly of Acaroidea was rejected, and the Suidasiidae and Lardoglyphidae appeared to deviate from the Acaroidea branch. Our research proposed a review of the current Acaroidea classification system.
Collapse
Affiliation(s)
- Yu Fang
- Department of Health Inspection and Quarantine, Wannan Medical College, Wuhu, 241002, China
- Department of Medical Parasitology, Wannan Medical College, Wuhu, China
| | - Mingzhong Sun
- Department of Health Inspection and Quarantine, Wannan Medical College, Wuhu, 241002, China
| | - Ying Fang
- Department of Health Inspection and Quarantine, Wannan Medical College, Wuhu, 241002, China
| | - Zetao Zuo
- Department of Health Inspection and Quarantine, Wannan Medical College, Wuhu, 241002, China
| | - Luyao Liu
- Department of Health Inspection and Quarantine, Wannan Medical College, Wuhu, 241002, China
| | - Lingmiao Chu
- Department of Health Inspection and Quarantine, Wannan Medical College, Wuhu, 241002, China
| | - Lan Ding
- Department of Health Inspection and Quarantine, Wannan Medical College, Wuhu, 241002, China
| | - Caixiao Hu
- Department of Health Inspection and Quarantine, Wannan Medical College, Wuhu, 241002, China
| | - Feiyan Li
- Department of Health Inspection and Quarantine, Wannan Medical College, Wuhu, 241002, China
| | - Renrui Han
- Department of Health Inspection and Quarantine, Wannan Medical College, Wuhu, 241002, China
| | - Xingquan Xia
- College of Life Science, The Provincial Key Lab of the Conservation and Exploitation Research of Biological Resources in Anhui, Anhui Normal University, Wuhu, China.
| | - Shulin Zhou
- Department of Medical Parasitology, Wannan Medical College, Wuhu, China.
| | - Entao Sun
- Department of Health Inspection and Quarantine, Wannan Medical College, Wuhu, 241002, China.
| |
Collapse
|
3
|
Alves VS, Salazar-Garcés LF, Santiago LF, Fonseca PLC, Fernandes AMS, Silva RC, Souza LM, Cunha PPRS, Barbosa MFC, Aguiar ERGR, Pacheco LGC, Alcantara-Neves NM, Pinheiro CS. Identification of Glycycometus malaysiensis (for the first time in Brazil), Blomia tropicalis and Dermatophagoides pteronyssinus through multiplex PCR. EXPERIMENTAL & APPLIED ACAROLOGY 2022; 86:385-406. [PMID: 35286553 PMCID: PMC8919168 DOI: 10.1007/s10493-022-00694-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Accepted: 01/21/2022] [Indexed: 06/14/2023]
Abstract
Blomia tropicalis and Dermatophagoides pteronyssinus play an important role in triggering allergy. Glycycometus malaysiensis causes IgE reaction in sensitive people, but is rarely reported in domestic dust, because it is morphologically similar to B. tropicalis making the identification of these species difficult. The identification of mites is mostly based on morphology, a time-consuming and ambiguous approach. Herein, we describe a multiplex polymerase chain reaction (mPCR) assay based on ribosomal DNA capable to identify mixed cultures of B. tropicalis, D. pteronyssinus and G. malaysiensis, and/or to identify these species from environmental dust. For this, the internal transcribed spacer 2 (ITS2) regions, flanked by partial sequences of the 5.8S and 28S genes, were PCR-amplified, cloned and sequenced. The sequences obtained were aligned with co-specific sequences available in the GenBank database for primer design and phylogenetic studies. Three pairs of primers were chosen to compose the mPCR assay, which was used to verify the frequency of different mites in house dust samples (n = 20) from homes of Salvador, Brazil. Blomia tropicalis was the most frequent, found in 95% of the samples, followed by G. malaysiensis (70%) and D. pteronyssinus (60%). Besides reporting for the first time the occurrence of G. malaysiensis in Brazil, our results confirm the good resolution of the ITS2 region for mite identification. Furthermore, the mPCR assay proved to be a fast and reliable tool for identifying these mites in mixed cultures and could be applied in future epidemiological studies, and for quality control of mite extract production for general use.
Collapse
Affiliation(s)
- Vítor S Alves
- Laboratory of Allergy and Acarology, Institute of Health Sciences, Federal University of Bahia, Avenida Reitor Miguel Calmon, S/n, Vale do Canela, Salvador, Bahia, CEP: 40110-100, Brazil
- Vaccine Development Laboratory, Instituto Butantan, São Paulo, 05503-900, Brazil
| | - Luis F Salazar-Garcés
- Laboratory of Allergy and Acarology, Institute of Health Sciences, Federal University of Bahia, Avenida Reitor Miguel Calmon, S/n, Vale do Canela, Salvador, Bahia, CEP: 40110-100, Brazil
- Faculty of Health and Social Welfare, State University of Milagro, Milagro, 091050, Ecuador
| | - Leonardo F Santiago
- Laboratory of Allergy and Acarology, Institute of Health Sciences, Federal University of Bahia, Avenida Reitor Miguel Calmon, S/n, Vale do Canela, Salvador, Bahia, CEP: 40110-100, Brazil
| | - Paula L C Fonseca
- Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte, 30270-901, Brazil
| | - Antônio M S Fernandes
- Laboratory of Allergy and Acarology, Institute of Health Sciences, Federal University of Bahia, Avenida Reitor Miguel Calmon, S/n, Vale do Canela, Salvador, Bahia, CEP: 40110-100, Brazil
| | - Raphael C Silva
- Laboratory of Allergy and Acarology, Institute of Health Sciences, Federal University of Bahia, Avenida Reitor Miguel Calmon, S/n, Vale do Canela, Salvador, Bahia, CEP: 40110-100, Brazil
| | - Lorena M Souza
- Laboratory of Allergy and Acarology, Institute of Health Sciences, Federal University of Bahia, Avenida Reitor Miguel Calmon, S/n, Vale do Canela, Salvador, Bahia, CEP: 40110-100, Brazil
- Salvador University, Salvador, 41720-200, Brazil
| | - Pedro P R S Cunha
- Laboratory of Allergy and Acarology, Institute of Health Sciences, Federal University of Bahia, Avenida Reitor Miguel Calmon, S/n, Vale do Canela, Salvador, Bahia, CEP: 40110-100, Brazil
| | - Marina F C Barbosa
- Luiz de Queiroz' Higher School of Agriculture, University of São Paulo, Piracicaba, São Paulo, 13418-900, Brazil
| | - Eric R G R Aguiar
- Center of Biotechnology and Genetics, State University of Santa Cruz, Ilhéus, 45652-900, Brazil
| | - Luis G C Pacheco
- Laboratory of Allergy and Acarology, Institute of Health Sciences, Federal University of Bahia, Avenida Reitor Miguel Calmon, S/n, Vale do Canela, Salvador, Bahia, CEP: 40110-100, Brazil
| | - Neuza M Alcantara-Neves
- Laboratory of Allergy and Acarology, Institute of Health Sciences, Federal University of Bahia, Avenida Reitor Miguel Calmon, S/n, Vale do Canela, Salvador, Bahia, CEP: 40110-100, Brazil
| | - Carina S Pinheiro
- Laboratory of Allergy and Acarology, Institute of Health Sciences, Federal University of Bahia, Avenida Reitor Miguel Calmon, S/n, Vale do Canela, Salvador, Bahia, CEP: 40110-100, Brazil.
| |
Collapse
|