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Aguiar M, Anam V, Blyuss KB, Estadilla CDS, Guerrero BV, Knopoff D, Kooi BW, Mateus L, Srivastav AK, Steindorf V, Stollenwerk N. Prescriptive, descriptive or predictive models: What approach should be taken when empirical data is limited? Reply to comments on "Mathematical models for Dengue fever epidemiology: A 10-year systematic review". Phys Life Rev 2023; 46:56-64. [PMID: 37245453 DOI: 10.1016/j.plrev.2023.05.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2023] [Accepted: 05/07/2023] [Indexed: 05/30/2023]
Affiliation(s)
- Maíra Aguiar
- Basque Center for Applied Mathematics, Alameda de Mazarredo 14, Bilbao, E-48009, Basque Country, Spain; Ikerbasque, Basque Foundation for Science, Bilbao, Spain.
| | - Vizda Anam
- Basque Center for Applied Mathematics, Alameda de Mazarredo 14, Bilbao, E-48009, Basque Country, Spain
| | | | - Carlo Delfin S Estadilla
- Basque Center for Applied Mathematics, Alameda de Mazarredo 14, Bilbao, E-48009, Basque Country, Spain; Preventive Medicine and Public Health Department, University of the Basque Country (UPV/EHU), Leioa, Basque Country Spain
| | - Bruno V Guerrero
- Basque Center for Applied Mathematics, Alameda de Mazarredo 14, Bilbao, E-48009, Basque Country, Spain
| | - Damián Knopoff
- Centro de Investigaciones y Estudios de Matemática CIEM, CONICET, Córdoba, Argentina; Intelligent Biodata SL, San Sebastián, Spain
| | - Bob W Kooi
- Basque Center for Applied Mathematics, Alameda de Mazarredo 14, Bilbao, E-48009, Basque Country, Spain; VU University, Faculty of Science, De Boelelaan 1085, NL 1081, HV Amsterdam, the Netherlands
| | - Luís Mateus
- Basque Center for Applied Mathematics, Alameda de Mazarredo 14, Bilbao, E-48009, Basque Country, Spain
| | - Akhil Kumar Srivastav
- Basque Center for Applied Mathematics, Alameda de Mazarredo 14, Bilbao, E-48009, Basque Country, Spain
| | - Vanessa Steindorf
- Basque Center for Applied Mathematics, Alameda de Mazarredo 14, Bilbao, E-48009, Basque Country, Spain
| | - Nico Stollenwerk
- Basque Center for Applied Mathematics, Alameda de Mazarredo 14, Bilbao, E-48009, Basque Country, Spain
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Punyapornwithaya V, Arjkumpa O, Buamithup N, Kuatako N, Klaharn K, Sansamur C, Jampachaisri K. Forecasting of daily new lumpy skin disease cases in Thailand at different stages of the epidemic using fuzzy logic time series, NNAR, and ARIMA methods. Prev Vet Med 2023; 217:105964. [PMID: 37393704 DOI: 10.1016/j.prevetmed.2023.105964] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Revised: 06/08/2023] [Accepted: 06/12/2023] [Indexed: 07/04/2023]
Abstract
Lumpy skin disease (LSD) is an important transboundary disease affecting cattle in numerous countries in various continents. In Thailand, LSD is regarded as a serious threat to the cattle industry. Disease forecasting can assist authorities in formulating prevention and control policies. Therefore, the objective of this study was to compare the performance of time series models in forecasting a potential LSD epidemic in Thailand using nationwide data. For the forecasting of daily new cases, fuzzy time series (FTS), neural network auto-regressive (NNAR), and auto-regressive integrated moving average (ARIMA) models were applied to various datasets representing the different stages of the epidemic. Non-overlapping sliding and expanding window approaches were also employed to train the forecasting models. The results showed that the FTS outperformed other models in five of the seven validation datasets based on various error metrics. The predictive performance of the NNAR and ARIMA models was comparable, with NNAR outperforming ARIMA in some datasets and vice versa. Furthermore, the performance of models built from sliding and expanding window techniques was different. This is the first study to compare the forecasting abilities of the FTS, NNAR, and ARIMA models across multiple phases of the LSD epidemic. Livestock authorities and decision-makers may incorporate the forecasting techniques demonstrated herein into the LSD surveillance system to enhance its functionality and utility.
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Affiliation(s)
- Veerasak Punyapornwithaya
- Department of Veterinary Bioscience and Veterinary Public Health, Faculty of Veterinary Medicine, Chiang Mai University, Chiang Mai 50100, Thailand; Center of Excellence in Veterinary Public Health, Faculty of Veterinary Medicine, Chiang Mai University, Chiang Mai 50100, Thailand
| | - Orapun Arjkumpa
- Department of Livestock Development, Animal Health Section, The 4th Regional Livestock Office, Khon Kaen 40260, Thailand
| | - Noppawan Buamithup
- Bureau of Disease Control and Veterinary Services, Department of Livestock Development, Bangkok 10400, Thailand
| | - Noppasorn Kuatako
- Bureau of Disease Control and Veterinary Services, Department of Livestock Development, Bangkok 10400, Thailand
| | - Kunnanut Klaharn
- Bureau of Livestock Standards and Certification, Department of Livestock Development, Bangkok 10400, Thailand.
| | - Chalutwan Sansamur
- Akkhraratchakumari Veterinary College, Walailak University, Nakhon Si Thammarat 80161, Thailand
| | - Katechan Jampachaisri
- Department of Mathematics, Faculty of Science, Naresuan University, Phitsanulok 65000, Thailand.
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Behavioral and game-theoretic modeling of dengue epidemic: Comment on "Mathematical models for dengue fever epidemiology: A 10-year systematic review" by M. Aguiar et al. Phys Life Rev 2022; 43:20-22. [PMID: 36029602 PMCID: PMC9712585 DOI: 10.1016/j.plrev.2022.07.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Accepted: 07/28/2022] [Indexed: 12/15/2022]
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A Bayesian generative neural network framework for epidemic inference problems. Sci Rep 2022; 12:19673. [PMID: 36385141 PMCID: PMC9667449 DOI: 10.1038/s41598-022-20898-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Accepted: 09/20/2022] [Indexed: 11/17/2022] Open
Abstract
The reconstruction of missing information in epidemic spreading on contact networks can be essential in the prevention and containment strategies. The identification and warning of infectious but asymptomatic individuals (i.e., contact tracing), the well-known patient-zero problem, or the inference of the infectivity values in structured populations are examples of significant epidemic inference problems. As the number of possible epidemic cascades grows exponentially with the number of individuals involved and only an almost negligible subset of them is compatible with the observations (e.g., medical tests), epidemic inference in contact networks poses incredible computational challenges. We present a new generative neural networks framework that learns to generate the most probable infection cascades compatible with observations. The proposed method achieves better (in some cases, significantly better) or comparable results with existing methods in all problems considered both in synthetic and real contact networks. Given its generality, clear Bayesian and variational nature, the presented framework paves the way to solve fundamental inference epidemic problems with high precision in small and medium-sized real case scenarios such as the spread of infections in workplaces and hospitals.
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Quality Assessment of Vocational Education Teaching Reform Based on Deep Learning. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2022; 2022:1499420. [PMID: 35813413 PMCID: PMC9270111 DOI: 10.1155/2022/1499420] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/25/2022] [Revised: 05/18/2022] [Accepted: 05/23/2022] [Indexed: 11/25/2022]
Abstract
In my country, vocational training is an important part of the educational system. In my country's vocational education system, there is currently a conscious focus on reform and innovation. It is critical to undertake a thorough assessment of teaching quality in vocational education in order to improve teaching quality. Artificial intelligence technology, particularly deep learning technology, can successfully handle this challenge because of the various and complicated aspects involved in the assessment of teaching quality. This article thus provides an evaluation approach for the quality of vocational education that is based on a thorough investigation. Finally, research has demonstrated that this approach is capable of objectively and fairly evaluating a teacher's teaching quality, increasing a teacher's teaching passion, improving a teacher's teaching quality, and nurturing extraordinary abilities.
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Price Forecast for Mexican Red Spiny Lobster (Panulirus spp.) Using Artificial Neural Networks (ANNs). APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12126044] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
The selling price is one of the essential variables in decision making for fishers regarding the catching of a fishing resource. In the case of the Pacific Mexican lobster fishery, the price uncertainty at the beginning of the season translates into the suboptimal utilization of this resource. This work aims to predict the export price of Mexican red lobster (Panulirus) in a fishing season using demand-related market variables including price, main competitors, main buyers, and product quantities exported/imported in the market. We used the monthly export price from 2006 to 2018 for the main importer, China. As a method for price forecasting, artificial neural networks (ANNs), with and without exogenous variables (NARX, NAR), were used as an autoregressive model, while the same information was analyzed with an ARIMAX model for comparative purposes. It was found that ANNs are a useful tool that yielded better predictive power when forecasting Mexican lobster export prices compared to ARIMAX models. The predictive power was evaluated by comparing the mean square errors (MSE) of 15 models. The MSE of ANNs (73.07) was lower than that of the four ARIMAX models (88.1). It is concluded that neural networks are a valuable tool for accurately predicting prices relative to real values, an aspect of great interest for application in fishery resource management.
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The State of the Art of Data Mining Algorithms for Predicting the COVID-19 Pandemic. AXIOMS 2022. [DOI: 10.3390/axioms11050242] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Current computer systems are accumulating huge amounts of information in several application domains. The outbreak of COVID-19 has increased rekindled interest in the use of data mining techniques for the analysis of factors that are related to the emergence of an epidemic. Data mining techniques are being used in the analysis and interpretation of information, which helps in the discovery of patterns, planning of isolation policies, and even predicting the speed of proliferation of contagion in a viral disease such as COVID-19. This research provides a comprehensive study of various data mining algorithms that are used in conjunction with epidemiological prediction models. The document considers that there is an opportunity to improve or develop tools that offer an accurate prognosis in the management of viral diseases through the use of data mining tools, based on a comparative study of 35 research papers.
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Trends in using IoT with machine learning in smart health assessment. Int J Health Sci (Qassim) 2022. [DOI: 10.53730/ijhs.v6ns3.6404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The Internet of Things (IoT) provides a rich source of information that can be uncovered using machine learning (ML). The decision-making processes in several industries, such as education, security, business, and healthcare, have been aided by these hybrid technologies. For optimum prediction and recommendation systems, ML enhances the Internet of Things (IoT). Machines are already making medical records, diagnosing diseases, and monitoring patients using IoT and ML in the healthcare industry. Various datasets need different ML algorithms to perform well. It's possible that the total findings will be impacted if the predicted results are not consistent. In clinical decision-making, the variability of prediction outcomes is a major consideration. To effectively utilise IoT data in healthcare, it's critical to have a firm grasp of the various machine learning techniques in use. Algorithms for categorization and prediction that have been employed in the healthcare industry are highlighted in this article. As stated earlier, the purpose of this work is to provide readers with an in-depth look at current machine learning algorithms and how they apply to IoT medical data.
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Petropoulos F, Makridakis S, Stylianou N. COVID-19: Forecasting confirmed cases and deaths with a simple time series model. INTERNATIONAL JOURNAL OF FORECASTING 2022; 38:439-452. [PMID: 33311822 PMCID: PMC7717777 DOI: 10.1016/j.ijforecast.2020.11.010] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Forecasting the outcome of outbreaks as early and as accurately as possible is crucial for decision-making and policy implementations. A significant challenge faced by forecasters is that not all outbreaks and epidemics turn into pandemics, making the prediction of their severity difficult. At the same time, the decisions made to enforce lockdowns and other mitigating interventions versus their socioeconomic consequences are not only hard to make, but also highly uncertain. The majority of modeling approaches to outbreaks, epidemics, and pandemics take an epidemiological approach that considers biological and disease processes. In this paper, we accept the limitations of forecasting to predict the long-term trajectory of an outbreak, and instead, we propose a statistical, time series approach to modelling and predicting the short-term behavior of COVID-19. Our model assumes a multiplicative trend, aiming to capture the continuation of the two variables we predict (global confirmed cases and deaths) as well as their uncertainty. We present the timeline of producing and evaluating 10-day-ahead forecasts over a period of four months. Our simple model offers competitive forecast accuracy and estimates of uncertainty that are useful and practically relevant.
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Affiliation(s)
| | - Spyros Makridakis
- Institute for the Future (IFF), University of Nicosia, Nicosia, Cyprus
| | - Neophytos Stylianou
- International Institute for Compassionate Care, Cyprus
- School of Management, University of Bath, UK
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TB Hackathon: Development and Comparison of Five Models to Predict Subnational Tuberculosis Prevalence in Pakistan. Trop Med Infect Dis 2022; 7:tropicalmed7010013. [PMID: 35051129 PMCID: PMC8780063 DOI: 10.3390/tropicalmed7010013] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Revised: 01/05/2022] [Accepted: 01/11/2022] [Indexed: 12/04/2022] Open
Abstract
Pakistan's national tuberculosis control programme (NTP) is among the many programmes worldwide that value the importance of subnational tuberculosis (TB) burden estimates to support disease control efforts, but do not have reliable estimates. A hackathon was thus organised to solicit the development and comparison of several models for small area estimation of TB. The TB hackathon was launched in April 2019. Participating teams were requested to produce district-level estimates of bacteriologically positive TB prevalence among adults (over 15 years of age) for 2018. The NTP provided case-based data from their 2010-2011 TB prevalence survey, along with data relating to TB screening, testing and treatment for the period between 2010-2011 and 2018. Five teams submitted district-level TB prevalence estimates, methodological details and programming code. Although the geographical distribution of TB prevalence varied considerably across models, we identified several districts with consistently low notification-to-prevalence ratios. The hackathon highlighted the challenges of generating granular spatiotemporal TB prevalence forecasts based on a cross-sectional prevalence survey data and other data sources. Nevertheless, it provided a range of approaches to subnational disease modelling. The NTP's use and plans for these outputs shows that, limitations notwithstanding, they can be valuable for programme planning.
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Abstract
In this paper, we study and present a mathematical modeling approach based on artificial neural networks to forecast the number of cases of respiratory syncytial virus (RSV). The number of RSV-positive cases in most of the countries around the world present a seasonal-type behavior. We constructed and developed several multilayer perceptron (MLP) models that intend to appropriately forecast the number of cases of RSV, based on previous history. We compared our mathematical modeling approach with a classical statistical technique for the time-series, and we concluded that our results are more accurate. The dataset collected during 2005 to 2010 consisting of 312 weeks belongs to Bogotá D.C., Colombia. The adjusted MLP network that we constructed has a fairly high forecast accuracy. Finally, based on these computations, we recommend training the selected MLP model using 70% of the historical data of RSV-positive cases for training and 20% for validation in order to obtain more accurate results. These results are useful and provide scientific information for health authorities of Colombia to design suitable public health policies related to RSV.
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Souza GND, Braga MDB, Rodrigues LLS, Fernandes RDS, Ramos RTJ, Carneiro AR, Brito SRD, Dolácio CJF, Tavares IDS, Noronha FN, Pinheiro RR, Diniz HAC, Botelho MDN, Vallinoto ACR, Rocha JECD. COVID-PA Bulletin: reports on artificial intelligence-based forecasting in coping with COVID-19 pandemic in the state of Pará, Brazil. EPIDEMIOLOGIA E SERVIÇOS DE SAÚDE 2021; 30:e2021098. [PMID: 34730720 DOI: 10.1590/s1679-49742021000400012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2021] [Accepted: 07/02/2021] [Indexed: 11/22/2022] Open
Abstract
OBJECTIVE To report the university extension research result entitled 'The COVID-PA Bulletin', which presented forecasts on the behavior of the pandemic in the state of Pará, Brazil. METHODS The artificial intelligence technique also known as 'artificial neural networks' was used to generate 13 bulletins with short-term forecasts based on historical data from the State Department of Public Health information system. RESULTS After eight months of predictions, the technique generated reliable results, with an average accuracy of 97% (observed for147 days) for confirmed cases, 96% (observed for 161 days) for deaths and 86% (observed for 72 days) for Intensive Care Unit bed occupancy. CONCLUSION These bulletins have become a useful decision-making tool for public managers, assisting in the reallocation of hospital resources and optimization of COVID-19 control strategies in various regions of the state of Pará.
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Swaraj A, Verma K, Kaur A, Singh G, Kumar A, Melo de Sales L. Implementation of stacking based ARIMA model for prediction of Covid-19 cases in India. J Biomed Inform 2021; 121:103887. [PMID: 34407487 PMCID: PMC8364768 DOI: 10.1016/j.jbi.2021.103887] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2020] [Revised: 06/01/2021] [Accepted: 08/08/2021] [Indexed: 12/24/2022]
Abstract
BACKGROUND Time-series forecasting has a critical role during pandemics as it provides essential information that can lead to abstaining from the spread of the disease. The novel coronavirus disease, COVID-19, is spreading rapidly all over the world. The countries with dense populations, in particular, such as India, await imminent risk in tackling the epidemic. Different forecasting models are being used to predict future cases of COVID-19. The predicament for most of them is that they are not able to capture both the linear and nonlinear features of the data solely. METHODS We propose an ensemble model integrating an autoregressive integrated moving average model (ARIMA) and a nonlinear autoregressive neural network (NAR). ARIMA models are used to extract the linear correlations and the NAR neural network for modeling the residuals of ARIMA containing nonlinear components of the data. Comparison: Single ARIMA model, ARIMA-NAR model and few other existing models which have been applied on the COVID-19 data in different countries are compared based on performance evaluation parameters. RESULT The hybrid combination displayed significant reduction in RMSE (16.23%), MAE (37.89%) and MAPE (39.53%) values when compared with single ARIMA model for daily observed cases. Similar results with reduced error percentages were found for daily reported deaths and cases of recovery as well. RMSE value of our hybrid model was lesser in comparison to other models used for forecasting COVID-19 in different countries. CONCLUSION Results suggested the effectiveness of the new hybrid model over a single ARIMA model in capturing the linear as well as nonlinear patterns of the COVID-19 data.
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Affiliation(s)
- Aman Swaraj
- Indian Institute of Technology, Roorkee, India.
| | - Karan Verma
- National Institute of Technology, Delhi, India.
| | | | | | - Ashok Kumar
- Government Mahila Engineering College, Ajmer, India.
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Puleio A. Recurrent neural network ensemble, a new instrument for the prediction of infectious diseases. EUROPEAN PHYSICAL JOURNAL PLUS 2021; 136:319. [PMID: 33758734 PMCID: PMC7970774 DOI: 10.1140/epjp/s13360-021-01285-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Accepted: 02/26/2021] [Indexed: 06/12/2023]
Abstract
Infectious diseases afflict human beings since ancient times. We can classify the infectious disease in two principal types: the emerging diseases, that are caused by new pathogens, and the re-emerging diseases, due to a new spread of a known pathogen. Both types can then be subdivided in natural, accidental or intentional spreads. The risk associated to infectious diseases strongly increased in the last decades, especially because of the globalisation, which leads to a denser and more efficient link between nations, involving that a local infectious may easily spread worldwide, such as the SARS-CoV-2 in 2019-2020. The development of new methods to predict the spread of diseases is crucial. However, sometimes the variables are too many that classical algorithms fail in the prediction. Aim of this work is to investigate the use of an ensemble of recurrent neural networks for disease prediction, using real flu's data to train and develop an instrument with the capability to determine the future flues. Two different types of study have been conducted. The first study investigates the influence of the neural network architecture, and it has been performed using 12 seasons to train the model and 3 seasons to test it. The second test aims to investigate the number of seasons needed to have a good prediction for future ones. The results demonstrated that this approach could ensure very high performances also with simple architectures. The ensemble approach allows to have information about the uncertainty of the prediction, allowing also to take countermeasures as a function of that value. In the future, the use of this approach may be applied to many other types of disease.
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Abstract
Machine learning (ML) is a powerful tool that delivers insights hidden in Internet of Things (IoT) data. These hybrid technologies work smartly to improve the decision-making process in different areas such as education, security, business, and the healthcare industry. ML empowers the IoT to demystify hidden patterns in bulk data for optimal prediction and recommendation systems. Healthcare has embraced IoT and ML so that automated machines make medical records, predict disease diagnoses, and, most importantly, conduct real-time monitoring of patients. Individual ML algorithms perform differently on different datasets. Due to the predictive results varying, this might impact the overall results. The variation in prediction results looms large in the clinical decision-making process. Therefore, it is essential to understand the different ML algorithms used to handle IoT data in the healthcare sector. This article highlights well-known ML algorithms for classification and prediction and demonstrates how they have been used in the healthcare sector. The aim of this paper is to present a comprehensive overview of existing ML approaches and their application in IoT medical data. In a thorough analysis, we observe that different ML prediction algorithms have various shortcomings. Depending on the type of IoT dataset, we need to choose an optimal method to predict critical healthcare data. The paper also provides some examples of IoT and machine learning to predict future healthcare system trends.
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Mohammadi F, Pourzamani H, Karimi H, Mohammadi M, Mohammadi M, Ardalan N, Khoshravesh R, Pooresmaeil H, Shahabi S, Sabahi M, Sadat Miryonesi F, Najafi M, Yavari Z, Mohammadi F, Teiri H, Jannati M. Artificial neural network and logistic regression modelling to characterize COVID-19 infected patients in local areas of Iran. Biomed J 2021; 44:304-316. [PMID: 34127421 PMCID: PMC7905378 DOI: 10.1016/j.bj.2021.02.006] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2020] [Revised: 02/11/2021] [Accepted: 02/17/2021] [Indexed: 01/08/2023] Open
Abstract
Background COVID-19 is an infectious disease that started spreading globally at the end of 2019. Due to differences in patient characteristics and symptoms in different regions, in this research, a comparative study was performed on COVID-19 patients in 6 provinces of Iran. Also, multilayer perceptron (MLP) neural network and Logistic Regression (LR) models were applied for the diagnosis of COVID-19. Methods A total of 1043 patients with suspected COVID-19 infection in Iran participated in this study. 29 characteristics, symptoms and underlying disease were obtained from hospitalized patients. Afterwards, we compared the obtained data between confirmed cases. Furthermore, the data was applied for building the ANN and LR models to diagnosis the infected patients by COVID-19. Results In 750 confirmed patients, Common symptoms were: fever (%) >37.5 °C, cough, shortness of breath, fatigue, chills and headache. The most common underlying diseases were: hypertension, diabetes, chronic obstructive pulmonary disease and coronary heart disease. Finally, the accuracy of the ANN model to the diagnosis of COVID-19 infection was higher than the LR model. Conclusion The prevalent symptoms and underlying diseases of COVID-19 patients were similar in different provinces, but the incidence of symptoms was significantly different from each other. Also, the study demonstrated that ANN and LR models have a high ability in the diagnosis of COVID-19 infection.
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Affiliation(s)
- Farzaneh Mohammadi
- Department of Environmental Health Engineering, School of Health, Isfahan University of Medical Sciences, Isfahan, Iran; Environment Research Center, Research Institute for Primordial Prevention of Non-communicable Disease, Isfahan University of Medical Sciences, Isfahan, Iran.
| | - Hamidreza Pourzamani
- Department of Environmental Health Engineering, School of Health, Isfahan University of Medical Sciences, Isfahan, Iran; Environment Research Center, Research Institute for Primordial Prevention of Non-communicable Disease, Isfahan University of Medical Sciences, Isfahan, Iran
| | - Hossein Karimi
- Department of Environmental Health Engineering, School of Health, Isfahan University of Medical Sciences, Isfahan, Iran
| | - Maryam Mohammadi
- Department of Management and Health Information Technology, School of Management and Medical Information Sciences, Isfahan University of Medical Sciences, Isfahan, Iran
| | - Mohammad Mohammadi
- Department of Electrical Engineering, Shahreza University, Isfahan, Iran
| | - Nahid Ardalan
- Kurdistan University of Medical Sciences, Sanandaj, Kurdistan, Iran
| | | | | | | | | | | | - Marzieh Najafi
- Isfahan Endocrine and Metabolism Research Center, Isfahan University of Medical Sciences, Isfahan, Iran
| | - Zeynab Yavari
- Genetic and Environmental Adventures Research Center, School of Abarkouh Paramedicine, Shahid Sadoughi University of Medical Sciences, Yazd, Iran
| | - Farideh Mohammadi
- Department of Textile Engineering, Isfahan University of Technology, Isfahan, Iran
| | - Hakimeh Teiri
- Department of Environmental Health Engineering, School of Health, Isfahan University of Medical Sciences, Isfahan, Iran; Environment Research Center, Research Institute for Primordial Prevention of Non-communicable Disease, Isfahan University of Medical Sciences, Isfahan, Iran
| | - Mahsa Jannati
- Graduate Student, Dept. of Civil Engineering, Lakehead University, Thunder Bay, ON, Canada
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Bernardo Gois FN, Lima A, Santos K, Oliveira R, Santiago V, Melo S, Costa R, Oliveira M, Henrique FDCDM, Neto JX, Martins Rodrigues Sobrinho CR, Lôbo Marques JA. Predictive models to the COVID-19. DATA SCIENCE FOR COVID-19 2021. [PMCID: PMC8138117 DOI: 10.1016/b978-0-12-824536-1.00023-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Following the World Health Organization proclaims a pandemic due to a disease that originated in China and advances rapidly across the globe, studies to predict the behavior of epidemics have become increasingly popular, mainly related to COVID-19. The critical point of these studies is to discuss the disease's behavior and the progression of the virus's natural course. However, the prediction of the actual number of infected people has proved to be a difficult task, due to a wide range of factors, such as mass testing, social isolation, underreporting of cases, among others. Therefore, the objective of this work is to understand the behavior of COVID-19 in the state of Ceará to forecast the total number of infected people and to aid in government decisions to control the outbreak of the virus and minimize social impacts and economics caused by the pandemic. So, to understand the behavior of COVID-19, this work discusses some forecast techniques using machine learning, logistic regression, filters, and epidemiologic models. Also, this work brings a new approach to the problem, bringing together data from Ceará with those from China, generating a hybrid dataset, and providing promising results. Finally, this work still compares the different approaches and techniques presented, opening opportunities for future discussions on the topic. The study obtains predictions with R2 score of 0.99 to short-term predictions and 0.93 to long-term predictions.
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Kafieh R, Saeedizadeh N, Arian R, Amini Z, Serej ND, Vaezi A, Javanmard SH. Isfahan and Covid-19: Deep spatiotemporal representation. CHAOS, SOLITONS, AND FRACTALS 2020; 141:110339. [PMID: 33041534 PMCID: PMC7534756 DOI: 10.1016/j.chaos.2020.110339] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/09/2020] [Revised: 09/19/2020] [Accepted: 10/03/2020] [Indexed: 06/11/2023]
Abstract
The coronavirus COVID-19 is affecting 213 countries and territories around the world. Iran was one of the first affected countries by this virus. Isfahan, as the third most populated province of Iran, experienced a noticeable epidemic. The prediction of epidemic size, peak value, and peak time can help policymakers in correct decisions. In this study, deep learning is selected as a powerful tool for forecasting this epidemic in Isfahan. A combination of effective Social Determinant of Health (SDH) and the occurrences of COVID-19 data are used as spatiotemporal input by using time-series information from different locations. Different models are utilized, and the best performance is found to be for a tailored type of long short-term memory (LSTM). This new method incorporates the mutual effect of all classes (confirmed/ death / recovered) in the prediction process. The future trajectory of the outbreak in Isfahan is forecasted with the proposed model. The paper demonstrates the positive effect of adding SDHs in pandemic prediction. Furthermore, the effectiveness of different SDHs is discussed, and the most effective terms are introduced. The method expresses high ability in both short- and long- term forecasting of the outbreak. The model proves that in predicting one class (like the number of confirmed cases), the effect of other accompanying numbers (like death and recovered cases) cannot be ignored. In conclusion, the superiorities of this model (particularity the long term predication ability) turn it into a reliable tool for helping the health decision-makers.
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Affiliation(s)
- Rahele Kafieh
- Medical Image and Signal Processing Research Center, School of Advanced Technologies in Medicine, Isfahan University of Medical Sciences, Isfahan, Iran
| | - Narges Saeedizadeh
- Medical Image and Signal Processing Research Center, School of Advanced Technologies in Medicine, Isfahan University of Medical Sciences, Isfahan, Iran
| | - Roya Arian
- Medical Image and Signal Processing Research Center, School of Advanced Technologies in Medicine, Isfahan University of Medical Sciences, Isfahan, Iran
| | - Zahra Amini
- Medical Image and Signal Processing Research Center, School of Advanced Technologies in Medicine, Isfahan University of Medical Sciences, Isfahan, Iran
| | - Nasim Dadashi Serej
- Medical Image and Signal Processing Research Center, School of Advanced Technologies in Medicine, Isfahan University of Medical Sciences, Isfahan, Iran
| | - Atefeh Vaezi
- Department of Community and Family Medicine, School of Medicine, Isfahan University of Medical Sciences, Isfahan, Iran
| | - Shaghayegh Haghjooy Javanmard
- Applied physiology research center, Isfahan cardiovascular research institute, Isfahan university of medical sciences, Isfahan, Iran
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Abstract
The recent worldwide outbreak of the novel coronavirus (COVID-19) has opened up new challenges to the research community. Artificial intelligence (AI) driven methods can be useful to predict the parameters, risks, and effects of such an epidemic. Such predictions can be helpful to control and prevent the spread of such diseases. The main challenges of applying AI is the small volume of data and the uncertain nature. Here, we propose a shallow long short-term memory (LSTM) based neural network to predict the risk category of a country. We have used a Bayesian optimization framework to optimize and automatically design country-specific networks. The results show that the proposed pipeline outperforms state-of-the-art methods for data of 180 countries and can be a useful tool for such risk categorization. We have also experimented with the trend data and weather data combined for the prediction. The outcome shows that the weather does not have a significant role. The tool can be used to predict long-duration outbreak of such an epidemic such that we can take preventive steps earlier.
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