1
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Oliveira-Ferreira C, Gaspar M, Vasconcelos ML. Neuronal substrates of egg-laying behaviour at the abdominal ganglion of Drosophila melanogaster. Sci Rep 2023; 13:21941. [PMID: 38081887 PMCID: PMC10713638 DOI: 10.1038/s41598-023-48109-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 11/22/2023] [Indexed: 12/18/2023] Open
Abstract
Egg-laying in Drosophila is the product of post-mating physiological and behavioural changes that culminate in a stereotyped sequence of actions. Egg-laying harbours a great potential as a paradigm to uncover how the appropriate motor circuits are organized and activated to generate behaviour. To study this programme, we first describe the different phases of the egg-laying programme and the specific actions associated with each phase. Using a combination of neuronal activation and silencing experiments, we identify neurons (OvAbg) in the abdominal ganglion as key players in egg-laying. To generate and functionally characterise subsets of OvAbg, we used an intersectional approach with neurotransmitter specific lines-VGlut, Cha and Gad1. We show that OvAbg/VGlut neurons promote initiation of egg deposition in a mating status dependent way. OvAbg/Cha neurons are required in exploration and egg deposition phases, though activation leads specifically to egg expulsion. Experiments with the OvAbg/Gad1 neurons show they participate in egg deposition. We further show a functional connection of OvAbg neurons with brain neurons. This study provides insight into the organization of neuronal circuits underlying complex motor behaviour.
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Affiliation(s)
| | - Miguel Gaspar
- Neuroscience Programme, Champalimaud Foundation, Lisbon, Portugal
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2
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Cavey M, Charroux B, Travaillard S, Manière G, Berthelot-Grosjean M, Quitard S, Minervino C, Detailleur B, Grosjean Y, Prud’homme B. Increased sugar valuation contributes to the evolutionary shift in egg-laying behavior of the fruit pest Drosophila suzukii. PLoS Biol 2023; 21:e3002432. [PMID: 38079457 PMCID: PMC10735178 DOI: 10.1371/journal.pbio.3002432] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Revised: 12/21/2023] [Accepted: 11/15/2023] [Indexed: 12/23/2023] Open
Abstract
Behavior evolution can promote the emergence of agricultural pests by changing their ecological niche. For example, the insect pest Drosophila suzukii has shifted its oviposition (egg-laying) niche from fermented fruits to ripe, non-fermented fruits, causing significant damage to a wide range of fruit crops worldwide. We investigate the chemosensory changes underlying this evolutionary shift and ask whether fruit sugars, which are depleted during fermentation, are important gustatory cues that direct D. suzukii oviposition to sweet, ripe fruits. We show that D. suzukii has expanded its range of oviposition responses to lower sugar concentrations than the model D. melanogaster, which prefers to lay eggs on fermented fruit. The increased response of D. suzukii to sugar correlates with an increase in the value of sugar relative to a fermented strawberry substrate in oviposition decisions. In addition, we show by genetic manipulation of sugar-gustatory receptor neurons (GRNs) that sugar perception is required for D. suzukii to prefer a ripe substrate over a fermented substrate, but not for D. melanogaster to prefer the fermented substrate. Thus, sugar is a major determinant of D. suzukii's choice of complex substrates. Calcium imaging experiments in the brain's primary gustatory center (suboesophageal zone) show that D. suzukii GRNs are not more sensitive to sugar than their D. melanogaster counterparts, suggesting that increased sugar valuation is encoded in downstream circuits of the central nervous system (CNS). Taken together, our data suggest that evolutionary changes in central brain sugar valuation computations are involved in driving D. suzukii's oviposition preference for sweet, ripe fruit.
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Affiliation(s)
- Matthieu Cavey
- Aix-Marseille Université, CNRS, IBDM, Institut de Biologie du Développement de Marseille, Campus de Luminy Case 907, Marseille, France
| | - Bernard Charroux
- Aix-Marseille Université, CNRS, IBDM, Institut de Biologie du Développement de Marseille, Campus de Luminy Case 907, Marseille, France
| | - Solène Travaillard
- Aix-Marseille Université, CNRS, IBDM, Institut de Biologie du Développement de Marseille, Campus de Luminy Case 907, Marseille, France
| | - Gérard Manière
- Centre des Sciences du Goût et de l’Alimentation, CNRS, INRAe, Institut Agro, Université de Bourgogne, Dijon, France
| | - Martine Berthelot-Grosjean
- Centre des Sciences du Goût et de l’Alimentation, CNRS, INRAe, Institut Agro, Université de Bourgogne, Dijon, France
| | - Sabine Quitard
- Aix-Marseille Université, CNRS, IBDM, Institut de Biologie du Développement de Marseille, Campus de Luminy Case 907, Marseille, France
| | - Caroline Minervino
- Aix-Marseille Université, CNRS, IBDM, Institut de Biologie du Développement de Marseille, Campus de Luminy Case 907, Marseille, France
| | - Brice Detailleur
- Aix-Marseille Université, CNRS, IBDM, Institut de Biologie du Développement de Marseille, Campus de Luminy Case 907, Marseille, France
| | - Yaël Grosjean
- Centre des Sciences du Goût et de l’Alimentation, CNRS, INRAe, Institut Agro, Université de Bourgogne, Dijon, France
| | - Benjamin Prud’homme
- Aix-Marseille Université, CNRS, IBDM, Institut de Biologie du Développement de Marseille, Campus de Luminy Case 907, Marseille, France
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3
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Vijayan V, Wang F, Wang K, Chakravorty A, Adachi A, Akhlaghpour H, Dickson BJ, Maimon G. A rise-to-threshold process for a relative-value decision. Nature 2023; 619:563-571. [PMID: 37407812 PMCID: PMC10356611 DOI: 10.1038/s41586-023-06271-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Accepted: 05/26/2023] [Indexed: 07/07/2023]
Abstract
Whereas progress has been made in the identification of neural signals related to rapid, cued decisions1-3, less is known about how brains guide and terminate more ethologically relevant decisions in which an animal's own behaviour governs the options experienced over minutes4-6. Drosophila search for many seconds to minutes for egg-laying sites with high relative value7,8 and have neurons, called oviDNs, whose activity fulfills necessity and sufficiency criteria for initiating the egg-deposition motor programme9. Here we show that oviDNs express a calcium signal that (1) dips when an egg is internally prepared (ovulated), (2) drifts up and down over seconds to minutes-in a manner influenced by the relative value of substrates-as a fly determines whether to lay an egg and (3) reaches a consistent peak level just before the abdomen bend for egg deposition. This signal is apparent in the cell bodies of oviDNs in the brain and it probably reflects a behaviourally relevant rise-to-threshold process in the ventral nerve cord, where the synaptic terminals of oviDNs are located and where their output can influence behaviour. We provide perturbational evidence that the egg-deposition motor programme is initiated once this process hits a threshold and that subthreshold variation in this process regulates the time spent considering options and, ultimately, the choice taken. Finally, we identify a small recurrent circuit that feeds into oviDNs and show that activity in each of its constituent cell types is required for laying an egg. These results argue that a rise-to-threshold process regulates a relative-value, self-paced decision and provide initial insight into the underlying circuit mechanism for building this process.
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Affiliation(s)
- Vikram Vijayan
- Laboratory of Integrative Brain Function and Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA.
| | - Fei Wang
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
- Institute of Neuroscience, State Key Laboratory of Neuroscience, Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, China
| | - Kaiyu Wang
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
- Lingang Laboratory, Shanghai Center for Brain Science and Brain-Inspired Intelligence Technology, Shanghai, China
| | - Arun Chakravorty
- Laboratory of Integrative Brain Function and Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA
| | - Atsuko Adachi
- Laboratory of Integrative Brain Function and Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA
| | - Hessameddin Akhlaghpour
- Laboratory of Integrative Brain Function and Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA
| | - Barry J Dickson
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
- Queensland Brain Institute, University of Queensland, St Lucia, Queensland, Australia
| | - Gaby Maimon
- Laboratory of Integrative Brain Function and Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA.
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4
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Marquis M, Wilson RI. Locomotor and olfactory responses in dopamine neurons of the Drosophila superior-lateral brain. Curr Biol 2022; 32:5406-5414.e5. [PMID: 36450284 DOI: 10.1016/j.cub.2022.11.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Revised: 08/17/2022] [Accepted: 11/03/2022] [Indexed: 12/03/2022]
Abstract
The Drosophila brain contains about 50 distinct morphological types of dopamine neurons.1,2,3,4 Physiological studies of Drosophila dopamine neurons have been largely limited to one brain region, the mushroom body,5,6,7,8,9,10,11,12,13 where they are implicated in learning.14,15,16,17,18 By comparison, we know little about the physiology of other Drosophila dopamine neurons. Interestingly, a recent whole-brain imaging study found that dopamine neuron activity in several fly brain regions is correlated with locomotion.19 This is notable because many dopamine neurons in the rodent brain are also correlated with locomotion or other movements20,21,22,23,24,25,26,27,28,29,30; however, most rodent studies have focused on learned and rewarded behaviors, and few have investigated dopamine neuron activity during spontaneous (self-timed) movements. In this study, we monitored dopamine neurons in the Drosophila brain during self-timed locomotor movements, focusing on several previously uncharacterized cell types that arborize in the superior-lateral brain, specifically the lateral horn and superior-lateral protocerebrum. We found that activity of all of these dopamine neurons correlated with spontaneous fluctuations in walking speed, with different cell types showing different speed correlations. Some dopamine neurons also responded to odors, but these responses were suppressed by repeated odor encounters. Finally, we found that the same identifiable dopamine neuron can encode different combinations of locomotion and odor in different individuals. If these dopamine neurons promote synaptic plasticity-like the dopamine neurons of the mushroom body-then, their tuning profiles would imply that plasticity depends on a flexible integration of sensory signals, motor signals, and recent experience.
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Affiliation(s)
- Michael Marquis
- Department of Neurobiology, Harvard Medical School, 220 Longwood Avenue, Boston, MA 02115, USA
| | - Rachel I Wilson
- Department of Neurobiology, Harvard Medical School, 220 Longwood Avenue, Boston, MA 02115, USA.
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5
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Vijayan V, Wang Z, Chandra V, Chakravorty A, Li R, Sarbanes SL, Akhlaghpour H, Maimon G. An internal expectation guides Drosophila egg-laying decisions. SCIENCE ADVANCES 2022; 8:eabn3852. [PMID: 36306348 PMCID: PMC9616500 DOI: 10.1126/sciadv.abn3852] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
To better understand how animals make ethologically relevant decisions, we studied egg-laying substrate choice in Drosophila. We found that flies dynamically increase or decrease their egg-laying rates while exploring substrates so as to target eggs to the best, recently visited option. Visiting the best option typically yielded inhibition of egg laying on other substrates for many minutes. Our data support a model in which flies compare the current substrate's value with an internally constructed expectation on the value of available options to regulate the likelihood of laying an egg. We show that dopamine neuron activity is critical for learning and/or expressing this expectation, similar to its role in certain tasks in vertebrates. Integrating sensory experiences over minutes to generate an estimate of the quality of available options allows flies to use a dynamic reference point for judging the current substrate and might be a general way in which decisions are made.
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6
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A functional division of Drosophila sweet taste neurons that is value-based and task-specific. Proc Natl Acad Sci U S A 2022; 119:2110158119. [PMID: 35031566 PMCID: PMC8784143 DOI: 10.1073/pnas.2110158119] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/07/2021] [Indexed: 11/18/2022] Open
Abstract
Sucrose is an attractive feeding substance and a positive reinforcer for Drosophila But Drosophila females have been shown to robustly reject a sucrose-containing option for egg-laying when given a choice between a plain and a sucrose-containing option in specific contexts. How the sweet taste system of Drosophila promotes context-dependent devaluation of an egg-laying option that contains sucrose, an otherwise highly appetitive tastant, is unknown. Here, we report that devaluation of sweetness/sucrose for egg-laying is executed by a sensory pathway recruited specifically by the sweet neurons on the legs of Drosophila First, silencing just the leg sweet neurons caused acceptance of the sucrose option in a sucrose versus plain decision, whereas expressing the channelrhodopsin CsChrimson in them caused rejection of a plain option that was "baited" with light over another that was not. Analogous bidirectional manipulations of other sweet neurons did not produce these effects. Second, circuit tracing revealed that the leg sweet neurons receive different presynaptic neuromodulations compared to some other sweet neurons and were the only ones with postsynaptic partners that projected prominently to the superior lateral protocerebrum (SLP) in the brain. Third, silencing one specific SLP-projecting postsynaptic partner of the leg sweet neurons reduced sucrose rejection, whereas expressing CsChrimson in it promoted rejection of a light-baited option during egg-laying. These results uncover that the Drosophila sweet taste system exhibits a functional division that is value-based and task-specific, challenging the conventional view that the system adheres to a simple labeled-line coding scheme.
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7
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Vesterberg A, Rizkalla R, Fitzpatrick MJ. Environmental influences on for-mediated oviposition decisions in Drosophila melanogaster. J Neurogenet 2021; 35:262-273. [PMID: 34259125 DOI: 10.1080/01677063.2021.1950713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
Deciding whether or not to lay an egg on a given substrate is an important task undertaken by females of many arthropods. It involves perceiving the environment (e.g. quality of the substrate, temperature, and humidity), formulating a decision, and then conducting the appropriate behaviours to oviposit. This oviposition site selection (OSS) provides a useful system for studying simple decision-making. OSS in fruit flies, Drosophila melanogaster, is influenced by both genetic and environmental variation. Naturally occurring allelic variation in the foraging gene (for) is known to affect OSS. Given a choice of high- and low-nutrient oviposition substrates, groups of rovers (forR) are known to lay significantly more of their eggs on low-nutrient sites than sitters (fors) and sitter mutants (fors2). Here we ask three questions: (1) Is the role of for in OSS affected by the availability of alternate oviposition sites? (2) Is the role of for in OSS sensitive to the density of ovipositing females? and (3) Does the gustatory sensation of yeast play a role in for-mediated variation in OSS? We find a role of choice and female density in rover/sitter differences in OSS, as well as a role of for in response to glycerol, an indicator of yeast. The role of for in OSS decision-making is complex and multi-faceted and should prove fertile ground for further research into the factors affecting decision-making behaviours.
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Affiliation(s)
- Anders Vesterberg
- Department of Biological Sciences, University of Toronto Scarborough, Toronto, Canada.,Cell and Systems Biology, University of Toronto, Toronto, Canada
| | - Rudy Rizkalla
- Department of Biological Sciences, University of Toronto Scarborough, Toronto, Canada
| | - Mark J Fitzpatrick
- Department of Biological Sciences, University of Toronto Scarborough, Toronto, Canada.,Cell and Systems Biology, University of Toronto, Toronto, Canada.,Ecology and Evolutionary Biology, University of Toronto, Toronto, Canada
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8
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Siju KP, De Backer JF, Grunwald Kadow IC. Dopamine modulation of sensory processing and adaptive behavior in flies. Cell Tissue Res 2021; 383:207-225. [PMID: 33515291 PMCID: PMC7873103 DOI: 10.1007/s00441-020-03371-x] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Accepted: 11/26/2020] [Indexed: 12/31/2022]
Abstract
Behavioral flexibility for appropriate action selection is an advantage when animals are faced with decisions that will determine their survival or death. In order to arrive at the right decision, animals evaluate information from their external environment, internal state, and past experiences. How these different signals are integrated and modulated in the brain, and how context- and state-dependent behavioral decisions are controlled are poorly understood questions. Studying the molecules that help convey and integrate such information in neural circuits is an important way to approach these questions. Many years of work in different model organisms have shown that dopamine is a critical neuromodulator for (reward based) associative learning. However, recent findings in vertebrates and invertebrates have demonstrated the complexity and heterogeneity of dopaminergic neuron populations and their functional implications in many adaptive behaviors important for survival. For example, dopaminergic neurons can integrate external sensory information, internal and behavioral states, and learned experience in the decision making circuitry. Several recent advances in methodologies and the availability of a synaptic level connectome of the whole-brain circuitry of Drosophila melanogaster make the fly an attractive system to study the roles of dopamine in decision making and state-dependent behavior. In particular, a learning and memory center-the mushroom body-is richly innervated by dopaminergic neurons that enable it to integrate multi-modal information according to state and context, and to modulate decision-making and behavior.
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Affiliation(s)
- K. P. Siju
- School of Life Sciences, Department of Molecular Life Sciences, Technical University of Munich, 85354 Freising, Germany
| | - Jean-Francois De Backer
- School of Life Sciences, Department of Molecular Life Sciences, Technical University of Munich, 85354 Freising, Germany
| | - Ilona C. Grunwald Kadow
- School of Life Sciences, Department of Molecular Life Sciences, Technical University of Munich, 85354 Freising, Germany
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9
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Molecular control limiting sensitivity of sweet taste neurons in Drosophila. Proc Natl Acad Sci U S A 2019; 116:20158-20168. [PMID: 31527261 DOI: 10.1073/pnas.1911583116] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
Abstract
To assess the biological value of environmental stimuli, animals' sensory systems must accurately decode both the identities and the intensities of these stimuli. While much is known about the mechanism by which sensory neurons detect the identities of stimuli, less is known about the mechanism that controls how sensory neurons respond appropriately to different intensities of stimuli. The ionotropic receptor IR76b has been shown to be expressed in different Drosophila chemosensory neurons for sensing a variety of chemicals. Here, we show that IR76b plays an unexpected role in lowering the sensitivity of Drosophila sweet taste neurons. First, IR76b mutants exhibited clear behavioral responses to sucrose and acetic acid (AA) at concentrations that were too low to trigger observable behavioral responses from WT animals. Second, IR76b is expressed in many sweet neurons on the labellum, and these neurons responded to both sucrose and AA. Removing IR76b from the sweet neurons increased their neuronal responses as well as animals' behavioral responses to sucrose and AA. Conversely, overexpressing IR76b in the sweet neurons decreased their neuronal as well as animals' behavioral responses to sucrose and AA. Last, IR76b's response-lowering ability has specificity: IR76b mutants and WT showed comparable responses to capsaicin when the mammalian capsaicin receptor VR1 was ectopically expressed in their sweet neurons. Our findings suggest that sensitivity of Drosophila sweet neurons to their endogenous ligands is actively limited by IR76b and uncover a potential molecular target by which contexts can modulate sensitivity of sweet neurons.
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10
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Wu SF, Ja YL, Zhang YJ, Yang CH. Sweet neurons inhibit texture discrimination by signaling TMC-expressing mechanosensitive neurons in Drosophila. eLife 2019; 8:46165. [PMID: 31184585 PMCID: PMC6559806 DOI: 10.7554/elife.46165] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2019] [Accepted: 05/30/2019] [Indexed: 11/13/2022] Open
Abstract
Integration of stimuli of different modalities is an important but incompletely understood process during decision making. Here, we show that Drosophila are capable of integrating mechanosensory and chemosensory information of choice options when deciding where to deposit their eggs. Specifically, females switch from preferring the softer option for egg-laying when both options are sugar free to being indifferent between them when both contain sucrose. Such sucrose-induced indifference between options of different hardness requires functional sweet neurons, and, curiously, the Transmembrane Channel-like (TMC)-expressing mechanosensitive neurons that have been previously shown to promote discrimination of substrate hardness during feeding. Further, axons of sweet neurons directly contact axons of TMC-expressing neurons in the brain and stimulation of sweet neurons increases Ca2+ influx into axons of TMC-expressing neurons. These results uncover one mechanism by which Drosophila integrate taste and tactile information when deciding where to deposit their eggs and reveal that TMC-expressing neurons play opposing roles in hardness discrimination in two different decisions.
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Affiliation(s)
- Shun-Fan Wu
- State & Local Joint Engineering Research Center of Green Pesticide Invention and Application, College of Plant Protection, Nanjing Agricultural University, Nanjing, China.,Department of Neurobiology, Duke University, Durham, United States
| | - Ya-Long Ja
- State & Local Joint Engineering Research Center of Green Pesticide Invention and Application, College of Plant Protection, Nanjing Agricultural University, Nanjing, China
| | - Yi-Jie Zhang
- State & Local Joint Engineering Research Center of Green Pesticide Invention and Application, College of Plant Protection, Nanjing Agricultural University, Nanjing, China
| | - Chung-Hui Yang
- Department of Neurobiology, Duke University, Durham, United States
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11
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Cury KM, Prud'homme B, Gompel N. A short guide to insect oviposition: when, where and how to lay an egg. J Neurogenet 2019; 33:75-89. [PMID: 31164023 DOI: 10.1080/01677063.2019.1586898] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
Egg-laying behavior is one of the most important aspects of female behavior, and has a profound impact on the fitness of a species. As such, it is controlled by several layers of regulation. Here, we review recent advances in our understanding of insect neural circuits that control when, where and how to lay an egg. We also outline outstanding open questions about the control of egg-laying decisions, and speculate on the possible neural underpinnings that can drive the diversification of oviposition behaviors through evolution.
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Affiliation(s)
- Kevin M Cury
- a Department of Neuroscience and the Mortimer B. Zuckerman Mind Brain Behavior Institute , Columbia University , New York , NY , USA
| | - Benjamin Prud'homme
- b Aix Marseille Université, CNRS , Institut de Biologie du Développement de Marseille (IBDM) , Marseille , France
| | - Nicolas Gompel
- c Fakultät für Biologie, Biozentrum , Ludwig-Maximilians Universität München , Munich , Germany
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12
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Mandel SJ, Shoaf ML, Braco JT, Silver WL, Johnson EC. Behavioral Aversion to AITC Requires Both Painless and dTRPA1 in Drosophila. Front Neural Circuits 2018; 12:45. [PMID: 30018539 PMCID: PMC6038230 DOI: 10.3389/fncir.2018.00045] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2018] [Accepted: 05/11/2018] [Indexed: 01/08/2023] Open
Abstract
There has been disagreement over the functional roles of the painless gene product in the detection and subsequent behavioral aversion to the active ingredient in wasabi, allyl isothiocyanate (AITC). Originally, painless was reported to eliminate the behavioral aversion to AITC, although subsequent reports suggested that another trpA homolog, dTRPA1, was responsible for AITC aversion. We re-evaluated the role of the painless gene in the detection of AITC, employing several different behavioral assays. Using the proboscis extension reflex (PER) assay, we observed that AITC did not reduce PER frequencies in painless or dTRPA1 mutants but did in wild-type genotypes. Quantification of food intake showed a significant decline in food consumption in the presence of AITC in wild-type, but not painless mutants. We adapted an oviposition choice assay and found wild-type oviposit on substrates lacking AITC, in contrast to painless and dTRPA1 mutants. Lastly, tracking individual flies relative to a point source of AITC, showed a consistent clustering of wild-type animals away from the point source, which was absent in painless mutants. We evaluated expression patterns of both dTRPA1 and painless, which showed expression in distinct central and peripheral populations. We identified the transmitter phenotypes of subsets of painless and dTRPA1 neurons and found similar neuropeptides as those expressed by mammalian trpA expressing neurons. Using a calcium reporter, we observed AITC-evoked responses in both painless and dTRPA1 expressing neurons. Collectively, these results reaffirm the necessity of painless in nociceptive behaviors and suggest experiments to further resolve the molecular basis of aversion.
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Affiliation(s)
- Samantha J Mandel
- Department of Biology, Wake Forest University, Winston-Salem, NC, United States
| | - Madison L Shoaf
- Department of Biology, Wake Forest University, Winston-Salem, NC, United States
| | - Jason T Braco
- Department of Biology, Wake Forest University, Winston-Salem, NC, United States
| | - Wayne L Silver
- Department of Biology, Wake Forest University, Winston-Salem, NC, United States.,Center for Molecular Communication and Signaling, Wake Forest University, Winston-Salem, NC, United States
| | - Erik C Johnson
- Department of Biology, Wake Forest University, Winston-Salem, NC, United States.,Center for Molecular Communication and Signaling, Wake Forest University, Winston-Salem, NC, United States
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13
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Deciphering Drosophila female innate behaviors. Curr Opin Neurobiol 2018; 52:139-148. [PMID: 29940518 DOI: 10.1016/j.conb.2018.06.005] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2018] [Accepted: 06/09/2018] [Indexed: 01/08/2023]
Abstract
Innate responses are often sexually dimorphic. Studies of female specific behaviors have remained niche, but the focus is changing as illustrated by the recent progress in understanding the female courtship responses and egg-laying decisions. In this review, we will cover our current knowledge about female behaviors in these two specific contexts. Recent studies elucidate on how females process the courtship song. They also show that egg-laying decisions are extremely complex, requiring the assessment of food, microbial, predator and social cues. Study of female responses will improve our understanding of how a nervous system processes different challenges.
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14
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Landayan D, Feldman DS, Wolf FW. Satiation state-dependent dopaminergic control of foraging in Drosophila. Sci Rep 2018; 8:5777. [PMID: 29636522 PMCID: PMC5893590 DOI: 10.1038/s41598-018-24217-1] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2018] [Accepted: 03/28/2018] [Indexed: 01/01/2023] Open
Abstract
Hunger evokes stereotypic behaviors that favor the discovery of nutrients. The neural pathways that coordinate internal and external cues to motivate foraging behaviors are only partly known. Drosophila that are food deprived increase locomotor activity, are more efficient in locating a discrete source of nutrition, and are willing to overcome adversity to obtain food. We developed a simple open field assay that allows flies to freely perform multiple steps of the foraging sequence, and we show that two distinct dopaminergic neural circuits regulate measures of foraging behaviors. One group, the PAM neurons, functions in food deprived flies while the other functions in well fed flies, and both promote foraging. These satiation state-dependent circuits converge on dopamine D1 receptor-expressing Kenyon cells of the mushroom body, where neural activity promotes foraging independent of satiation state. These findings provide evidence for active foraging in well-fed flies that is separable from hunger-driven foraging.
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Affiliation(s)
- Dan Landayan
- Quantitative & Systems Biology, University of California, Merced, Merced, CA, 95343, USA
| | - David S Feldman
- Molecular Cell Biology, School of Natural Sciences, University of California, Merced, Merced, CA, 95343, USA
| | - Fred W Wolf
- Quantitative & Systems Biology, University of California, Merced, Merced, CA, 95343, USA.
- Molecular Cell Biology, School of Natural Sciences, University of California, Merced, Merced, CA, 95343, USA.
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15
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Steck K, Walker SJ, Itskov PM, Baltazar C, Moreira JM, Ribeiro C. Internal amino acid state modulates yeast taste neurons to support protein homeostasis in Drosophila. eLife 2018; 7:31625. [PMID: 29393045 PMCID: PMC5812714 DOI: 10.7554/elife.31625] [Citation(s) in RCA: 63] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2017] [Accepted: 01/19/2018] [Indexed: 12/21/2022] Open
Abstract
To optimize fitness, animals must dynamically match food choices to their current needs. For drosophilids, yeast fulfills most dietary protein and micronutrient requirements. While several yeast metabolites activate known gustatory receptor neurons (GRNs) in Drosophila melanogaster, the chemosensory channels mediating yeast feeding remain unknown. Here we identify a class of proboscis GRNs required for yeast intake. Within this class, taste peg GRNs are specifically required to sustain yeast feeding. Sensillar GRNs, however, mediate feeding initiation. Furthermore, the response of yeast GRNs, but not sweet GRNs, is enhanced following deprivation from amino acids, providing a potential basis for protein-specific appetite. Although nutritional and reproductive states synergistically increase yeast appetite, reproductive state acts independently of nutritional state, modulating processing downstream of GRNs. Together, these results suggest that different internal states act at distinct levels of a dedicated gustatory circuit to elicit nutrient-specific appetites towards a complex, ecologically relevant protein source. When animals run low on a certain nutrient, they change their behavior to seek out and feed on foods rich in that missing element. For example, fruit flies lacking sugar will look for and eat more sweet food; if they need proteins, they will instead favor yeast, flies’ principal source of proteins. In fruit flies, certain neurons on the insects’ tongue (or proboscis) are dedicated only to taste. These cells are divided in groups specialized for a type of nutrient – for instance some of them only react to sugar. Taste neurons sense food and help coordinate how much and for how long the animals will feed. However, despite how important proteins are for flies, the neurons dedicated to tasting yeast had yet to be identified. Here, Steck, Walker et al. report discovering a new set of taste neurons in fruit flies, which are activated by a unique combination of molecules present in yeast. Crucially, without these neurons being active, the insects can no longer adjust their diet to eat more yeast when they are deprived of proteins. The activity of these cells is also regulated by internal levels of nutrients derived from proteins. The yeast-specific taste neurons are present in two areas on the fly’s proboscis, which is used like a straw when feeding. The two sets of cells have different roles in the consumption of yeast. The first group, which is located at the extremity of the proboscis, helps flies detect and start consuming the resource. The second group, which is on the inner surface of the proboscis, influences whether the insects keep feeding. If one of these groups of neurons is deactivated, flies continue to eat yeast as normal, showing that the system is redundant. However, if both sets are turned off artificially, the insects stop favoring yeast even when they are in need of proteins. Steck, Walker et al. show how the animals’ internal states also influence the activity of these neurons. When the insects are deprived of molecules that are only found in proteins, these newly discovered neurons are primed to react more strongly when they are exposed to yeast. This potentially makes flies eat more yeast, and as a result consume more proteins. Many biological systems in flies are similar in other insects and even humans. If this is the case for these taste neurons, fruit flies could be a good model to study how pests such as locusts and mosquitoes are attracted to the proteins in crops and blood, but also how humans make decisions about food.
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Affiliation(s)
- Kathrin Steck
- Champalimaud Centre for the Unknown, Lisbon, Portugal
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16
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Cording AC, Shiaelis N, Petridi S, Middleton CA, Wilson LG, Elliott CJH. Targeted kinase inhibition relieves slowness and tremor in a Drosophila model of LRRK2 Parkinson's disease. NPJ PARKINSONS DISEASE 2017; 3:34. [PMID: 29214211 PMCID: PMC5715132 DOI: 10.1038/s41531-017-0036-y] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/31/2017] [Revised: 11/03/2017] [Accepted: 11/07/2017] [Indexed: 11/25/2022]
Abstract
In a number of Drosophila models of genetic Parkinson’s disease (PD) flies climb more slowly than wild-type controls. However, this assay does not distinguish effects of PD-related genes on gravity sensation, “arousal”, central pattern generation of leg movements, or muscle. To address this problem, we have developed an assay for the fly proboscis extension response (PER). This is attractive because the PER has a simple, well-identified reflex neural circuit, in which sucrose sensing neurons activate a pair of “command interneurons”, and thence motoneurons whose activity contracts the proboscis muscle. This circuit is modulated by a single dopaminergic neuron (TH-VUM). We find that expressing either the G2019S or I2020T (but not R1441C, or kinase dead) forms of human LRRK2 in dopaminergic neurons reduces the percentage of flies that initially respond to sucrose stimulation. This is rescued fully by feeding l-DOPA and partially by feeding kinase inhibitors, targeted to LRRK2 (LRRK2-IN-1 and BMPPB-32). High-speed video shows that G2019S expression in dopaminergic neurons slows the speed of proboscis extension, makes its duration more variable, and increases the tremor. Testing subsets of dopaminergic neurons suggests that the single TH-VUM neuron is likely most important in this phenotype. We conclude the Drosophila PER provides an excellent model of LRRK2 motor deficits showing bradykinesia, akinesia, hypokinesia, and increased tremor, with the possibility to localize changes in neural signaling. A simple reflex in flies can be used to test the effectiveness of therapies that slow neurodegeneration in Parkinson’s disease (PD). Christopher Elliott and colleagues at the University of York in the United Kingdom investigated the contraction of the proboscis muscle which mediates a taste behavior response and is regulated by a single dopaminergic neuron. Flies bearing particular mutations in the PD-associated gene leucine-rich repeat kinase 2 (LRRK2) in dopaminergic neurons lost their ability to feed on a sweet solution. This was due to the movement of the proboscis muscle becoming slower and stiffer, hallmark features of PD. The authors rescued the impaired reflex reaction by feeding the flies l-DOPA or LRRK2 inhibitors. These findings highlight the proboscis extension response as a useful tool to identify other PD-associated mutations and test potential therapeutic compounds.
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Affiliation(s)
- Amy C Cording
- Department of Biology, University of York, York, YO1 5DD UK
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17
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Enterococci Mediate the Oviposition Preference of Drosophila melanogaster through Sucrose Catabolism. Sci Rep 2017; 7:13420. [PMID: 29044155 PMCID: PMC5647369 DOI: 10.1038/s41598-017-13705-5] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2017] [Accepted: 09/29/2017] [Indexed: 12/15/2022] Open
Abstract
Sucrose, one of the main products of photosynthesis in plants, functions as a universal biomarker for nutritional content and maturity of different fruits across diverse ecological niches. Drosophila melanogaster congregates to lay eggs in rotting fruits, yet the factors that influence these decisions remains uncovered. Here, we report that lactic acid bacteria Enterococci are critical modulators to attract Drosophila to lay eggs on decaying food. Drosophila-associated Enterococci predominantly catabolize sucrose for growing their population in fly food, and thus generate a unique ecological niche with depleted sucrose, but enriched bacteria. Female flies navigate these favorable oviposition sites by probing the sucrose cue with their gustatory sensory neurons. Acquirement of indigenous microbiota facilitated the development and systemic growth of Drosophila, thereby benefiting the survival and fitness of their offspring. Thus, our finding highlights the pivotal roles of commensal bacteria in influencing host behavior, opening the door to a better understanding of the ecological relationships between the microbial and metazoan worlds.
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18
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A Bitter Taste of the Sun Makes Egg-Laying Flies Run. Genetics 2017; 205:467-469. [PMID: 28154195 DOI: 10.1534/genetics.116.196352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2016] [Accepted: 11/20/2016] [Indexed: 11/18/2022] Open
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19
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H2O2-Sensitive Isoforms of Drosophila melanogaster TRPA1 Act in Bitter-Sensing Gustatory Neurons to Promote Avoidance of UV During Egg-Laying. Genetics 2016; 205:749-759. [PMID: 27932542 DOI: 10.1534/genetics.116.195172] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2016] [Accepted: 11/27/2016] [Indexed: 01/12/2023] Open
Abstract
The evolutionarily conserved TRPA1 channel can sense various stimuli including temperatures and chemical irritants. Recent results have suggested that specific isoforms of Drosophila TRPA1 (dTRPA1) are UV-sensitive and that their UV sensitivity is due to H2O2 sensitivity. However, whether such UV sensitivity served any physiological purposes in animal behavior was unclear. Here, we demonstrate that H2O2-sensitive dTRPA1 isoforms promote avoidance of UV when adult Drosophila females are selecting sites for egg-laying. First, we show that blind/visionless females are still capable of sensing and avoiding UV during egg-laying when intensity of UV is high yet within the range of natural sunlight. Second, we show that such vision-independent UV avoidance is mediated by a group of bitter-sensing neurons on the proboscis that express H2O2-sensitive dTRPA1 isoforms. We show that these bitter-sensing neurons exhibit dTRPA1-dependent UV sensitivity. Importantly, inhibiting activities of these bitter-sensing neurons, reducing their dTRPA1 expression, or reducing their H2O2-sensitivity all significantly reduced blind females' UV avoidance, whereas selectively restoring a H2O2-sensitive isoform of dTRPA1 in these neurons restored UV avoidance. Lastly, we show that specifically expressing the red-shifted channelrhodopsin CsChrimson in these bitter-sensing neurons promotes egg-laying avoidance of red light, an otherwise neutral cue for egg-laying females. Together, these results demonstrate a physiological role of the UV-sensitive dTRPA1 isoforms, reveal that adult Drosophila possess at least two sensory systems for detecting UV, and uncover an unexpected role of bitter-sensing taste neurons in UV sensing.
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20
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Ro J, Pak G, Malec PA, Lyu Y, Allison DB, Kennedy RT, Pletcher SD. Serotonin signaling mediates protein valuation and aging. eLife 2016; 5. [PMID: 27572262 PMCID: PMC5005037 DOI: 10.7554/elife.16843] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2016] [Accepted: 07/20/2016] [Indexed: 01/15/2023] Open
Abstract
Research into how protein restriction improves organismal health and lengthens lifespan has largely focused on cell-autonomous processes. In certain instances, however, nutrient effects on lifespan are independent of consumption, leading us to test the hypothesis that central, cell non-autonomous processes are important protein restriction regulators. We characterized a transient feeding preference for dietary protein after modest starvation in the fruit fly, Drosophila melanogaster, and identified tryptophan hydroxylase (Trh), serotonin receptor 2a (5HT2a), and the solute carrier 7-family amino acid transporter, JhI-21, as required for this preference through their role in establishing protein value. Disruption of any one of these genes increased lifespan up to 90% independent of food intake suggesting the perceived value of dietary protein is a critical determinant of its effect on lifespan. Evolutionarily conserved neuromodulatory systems that define neural states of nutrient demand and reward are therefore sufficient to control aging and physiology independent of food consumption. DOI:http://dx.doi.org/10.7554/eLife.16843.001 Limiting the amount of protein eaten, while still eating enough to avoid starving, has an unexpected effect: it can slow down aging and extend the lifespan in many animals from flies to mice. Previous work suggests that how an animal perceives food can also influence how fast the animal ages. For example, both flies and worms actually have shorter lifespans if their food intake is reduced when they can still “smell” food in their environment. However, the sensory cues that trigger changes in lifespan and the molecular mechanisms behind these effects are largely unknown. Ro et al. therefore asked whether fruit flies recognize protein in their food, and if so, whether such a recognition system would influence how the flies age. Flies that had been deprived of food for a brief period tended to eat more protein than other flies that had not been starved. Ro et al. then revealed that serotonin, a brain chemical that can alter the activity of nerve cells, plays a key role in how fruit flies decide to feed specifically on foods that contain protein. Further experiments revealed also that flies age faster when they are allowed to interact with protein in their diet independently from other nutrients, despite eating the same amount. Disrupting any of several components involved in serotonin signaling protected the flies from this effect and led to them living almost twice as long under these conditions. Ro et al. propose that the components of the recognition system work together to determine the reward associated with consuming protein by enhancing how much an animal values the protein in its food. As such, it is this protein reward or value – rather than just eating protein itself – that influences how quickly the fly ages. Further work is now needed to understand how the brain mechanisms that allow animals to perceive and evaluate food act to control lifespan and aging. DOI:http://dx.doi.org/10.7554/eLife.16843.002
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Affiliation(s)
- Jennifer Ro
- Program in Cellular and Molecular Biology, University of Michigan, Ann Arbor, United States
| | - Gloria Pak
- College of Arts and Science, University of Michigan, Ann Arbor, United States
| | - Paige A Malec
- Department of Chemistry, University of Michigan, Ann Arbor, United States
| | - Yang Lyu
- Department of Molecular and Integrative Physiology, University of Michigan, Ann Arbor, United States.,Geriatrics Center, University of Michigan, Ann Arbor, United States
| | - David B Allison
- Nutrition Obesity Research Center, University of Alabama at Birmingham, Birmingham, United States
| | - Robert T Kennedy
- Department of Chemistry, University of Michigan, Ann Arbor, United States
| | - Scott D Pletcher
- Program in Cellular and Molecular Biology, University of Michigan, Ann Arbor, United States.,Department of Molecular and Integrative Physiology, University of Michigan, Ann Arbor, United States.,Geriatrics Center, University of Michigan, Ann Arbor, United States
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21
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Gou B, Zhu E, He R, Stern U, Yang CH. High Throughput Assay to Examine Egg-Laying Preferences of Individual Drosophila melanogaster. J Vis Exp 2016:e53716. [PMID: 27077482 DOI: 10.3791/53716] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022] Open
Abstract
Recently, egg-laying preference of Drosophila has emerged as a genetically tractable model to study the neural basis of simple decision-making processes. When selecting sites to deposit their eggs, female flies are capable of ranking the relative attractiveness of their options and choosing the "greater of two goods." However, most egg-laying preference assays are not practical if one wants to take a systematic genetic screening approach to search for the circuit basis underlying this simple decision-making process, as they are population-based and laborious to set up. To increase the throughput of studying of egg-laying preferences of single females, we developed custom chambers that each can simultaneously assay egg-laying preferences of up to thirty individual flies as well as a protocol that ensures each female has a high egg-laying rate (so that their preference is readily discernable and more convincing). Our approach is simple to execute and produces very consistent results. Additionally, these chambers can be equipped with different attachments to allow video recording the egg-laying animals and to deliver light for optogenetics studies. This article provides the blueprints for fabricating these chambers and the procedure for preparing the flies to be assayed in these chambers.
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Affiliation(s)
- Bin Gou
- Department of Neurobiology, Duke University
| | - Edward Zhu
- Department of Pharmacology, Duke University
| | - Ruo He
- Department of Neurobiology, Duke University
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22
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French A, Ali Agha M, Mitra A, Yanagawa A, Sellier MJ, Marion-Poll F. Drosophila Bitter Taste(s). Front Integr Neurosci 2015; 9:58. [PMID: 26635553 PMCID: PMC4658422 DOI: 10.3389/fnint.2015.00058] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2015] [Accepted: 10/30/2015] [Indexed: 11/13/2022] Open
Abstract
Most animals possess taste receptors neurons detecting potentially noxious compounds. In humans, the ligands which activate these neurons define a sensory space called “bitter”. By extension, this term has been used in animals and insects to define molecules which induce aversive responses. In this review, based on our observations carried out in Drosophila, we examine how bitter compounds are detected and if bitter-sensitive neurons respond only to molecules bitter to humans. Like most animals, flies detect bitter chemicals through a specific population of taste neurons, distinct from those responding to sugars or to other modalities. Activating bitter-sensitive taste neurons induces aversive reactions and inhibits feeding. Bitter molecules also contribute to the suppression of sugar-neuron responses and can lead to a complete inhibition of the responses to sugar at the periphery. Since some bitter molecules activate bitter-sensitive neurons and some inhibit sugar detection, bitter molecules are represented by two sensory spaces which are only partially congruent. In addition to molecules which impact feeding, we recently discovered that the activation of bitter-sensitive neurons also induces grooming. Bitter-sensitive neurons of the wings and of the legs can sense chemicals from the gram negative bacteria, Escherichia coli, thus adding another biological function to these receptors. Bitter-sensitive neurons of the proboscis also respond to the inhibitory pheromone, 7-tricosene. Activating these neurons by bitter molecules in the context of sexual encounter inhibits courting and sexual reproduction, while activating these neurons with 7-tricosene in a feeding context will inhibit feeding. The picture that emerges from these observations is that the taste system is composed of detectors which monitor different “categories” of ligands, which facilitate or inhibit behaviors depending on the context (feeding, sexual reproduction, hygienic behavior), thus considerably extending the initial definition of “bitter” tasting.
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Affiliation(s)
- Alice French
- Evolution, Génomes, Comportement & Ecologie, CNRS, IRD, Université Paris-Sud, Université Paris-Saclay Gif-sur-Yvette, France
| | - Moutaz Ali Agha
- Evolution, Génomes, Comportement & Ecologie, CNRS, IRD, Université Paris-Sud, Université Paris-Saclay Gif-sur-Yvette, France
| | - Aniruddha Mitra
- Evolution, Génomes, Comportement & Ecologie, CNRS, IRD, Université Paris-Sud, Université Paris-Saclay Gif-sur-Yvette, France
| | - Aya Yanagawa
- Evolution, Génomes, Comportement & Ecologie, CNRS, IRD, Université Paris-Sud, Université Paris-Saclay Gif-sur-Yvette, France ; Research Institute for Sustainable Humanosphere, Kyoto University Uji City, Japan
| | - Marie-Jeanne Sellier
- Evolution, Génomes, Comportement & Ecologie, CNRS, IRD, Université Paris-Sud, Université Paris-Saclay Gif-sur-Yvette, France
| | - Frédéric Marion-Poll
- Evolution, Génomes, Comportement & Ecologie, CNRS, IRD, Université Paris-Sud, Université Paris-Saclay Gif-sur-Yvette, France ; AgroParisTech Paris, France
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23
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Stern U, He R, Yang CH. Analyzing animal behavior via classifying each video frame using convolutional neural networks. Sci Rep 2015; 5:14351. [PMID: 26394695 PMCID: PMC4585819 DOI: 10.1038/srep14351] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2015] [Accepted: 08/27/2015] [Indexed: 01/02/2023] Open
Abstract
High-throughput analysis of animal behavior requires software to analyze videos. Such software analyzes each frame individually, detecting animals’ body parts. But the image analysis rarely attempts to recognize “behavioral states”—e.g., actions or facial expressions—directly from the image instead of using the detected body parts. Here, we show that convolutional neural networks (CNNs)—a machine learning approach that recently became the leading technique for object recognition, human pose estimation, and human action recognition—were able to recognize directly from images whether Drosophila were “on” (standing or walking) or “off” (not in physical contact with) egg-laying substrates for each frame of our videos. We used multiple nets and image transformations to optimize accuracy for our classification task, achieving a surprisingly low error rate of just 0.072%. Classifying one of our 8 h videos took less than 3 h using a fast GPU. The approach enabled uncovering a novel egg-laying-induced behavior modification in Drosophila. Furthermore, it should be readily applicable to other behavior analysis tasks.
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Affiliation(s)
| | - Ruo He
- Dept. of Neurobiology, Duke University, Durham, NC 27710
| | - Chung-Hui Yang
- Dept. of Neurobiology, Duke University, Durham, NC 27710
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24
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Stern U, Zhu EY, He R, Yang CH. Long-duration animal tracking in difficult lighting conditions. Sci Rep 2015; 5:10432. [PMID: 26130571 PMCID: PMC4486997 DOI: 10.1038/srep10432] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2015] [Accepted: 04/14/2015] [Indexed: 12/27/2022] Open
Abstract
High-throughput analysis of animal behavior requires software to analyze videos. Such software typically depends on the experiments' being performed in good lighting conditions, but this ideal is difficult or impossible to achieve for certain classes of experiments. Here, we describe techniques that allow long-duration positional tracking in difficult lighting conditions with strong shadows or recurring "on"/"off" changes in lighting. The latter condition will likely become increasingly common, e.g., for Drosophila due to the advent of red-shifted channel rhodopsins. The techniques enabled tracking with good accuracy in three types of experiments with difficult lighting conditions in our lab. Our technique handling shadows relies on single-animal tracking and on shadows' and flies' being accurately distinguishable by distance to the center of the arena (or a similar geometric rule); the other techniques should be broadly applicable. We implemented the techniques as extensions of the widely-used tracking software Ctrax; however, they are relatively simple, not specific to Drosophila, and could be added to other trackers as well.
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Affiliation(s)
| | - Edward Y. Zhu
- Dept. of Neurobiology, Duke University, Durham, NC 27710
| | - Ruo He
- Dept. of Neurobiology, Duke University, Durham, NC 27710
| | - Chung-Hui Yang
- Dept. of Neurobiology, Duke University, Durham, NC 27710
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