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Jin L, Sullivan HA, Zhu M, Lea NE, Lavin TK, Fu X, Matsuyama M, Hou Y, Feng G, Wickersham IR. Third-generation rabies viral vectors allow nontoxic retrograde targeting of projection neurons with greatly increased efficiency. CELL REPORTS METHODS 2023; 3:100644. [PMID: 37989085 PMCID: PMC10694603 DOI: 10.1016/j.crmeth.2023.100644] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Revised: 08/16/2023] [Accepted: 10/23/2023] [Indexed: 11/23/2023]
Abstract
Rabies viral vectors have become important components of the systems neuroscience toolkit, allowing both direct retrograde targeting of projection neurons and monosynaptic tracing of inputs to defined postsynaptic populations, but the rapid cytotoxicity of first-generation (ΔG) vectors limits their use to short-term experiments. We recently introduced second-generation, double-deletion-mutant (ΔGL) rabies viral vectors, showing that they efficiently retrogradely infect projection neurons and express recombinases effectively but with little to no detectable toxicity; more recently, we have shown that ΔGL viruses can be used for monosynaptic tracing with far lower cytotoxicity than the first-generation system. Here, we introduce third-generation (ΔL) rabies viral vectors, which appear to be as nontoxic as second-generation ones but have the major advantage of growing to much higher titers, resulting in significantly increased numbers of retrogradely labeled neurons in vivo.
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Affiliation(s)
- Lei Jin
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Heather A Sullivan
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Mulangma Zhu
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Nicholas E Lea
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Thomas K Lavin
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Xin Fu
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Makoto Matsuyama
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - YuanYuan Hou
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Guoping Feng
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA; Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, USA
| | - Ian R Wickersham
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA.
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Trepka EB, Zhu S, Xia R, Chen X, Moore T. Functional interactions among neurons within single columns of macaque V1. eLife 2022; 11:e79322. [PMID: 36321687 PMCID: PMC9662816 DOI: 10.7554/elife.79322] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2022] [Accepted: 10/30/2022] [Indexed: 11/16/2022] Open
Abstract
Recent developments in high-density neurophysiological tools now make it possible to record from hundreds of single neurons within local, highly interconnected neural networks. Among the many advantages of such recordings is that they dramatically increase the quantity of identifiable, functional interactions between neurons thereby providing an unprecedented view of local circuits. Using high-density, Neuropixels recordings from single neocortical columns of primary visual cortex in nonhuman primates, we identified 1000s of functionally interacting neuronal pairs using established crosscorrelation approaches. Our results reveal clear and systematic variations in the synchrony and strength of functional interactions within single cortical columns. Despite neurons residing within the same column, both measures of interactions depended heavily on the vertical distance separating neuronal pairs, as well as on the similarity of stimulus tuning. In addition, we leveraged the statistical power afforded by the large numbers of functionally interacting pairs to categorize interactions between neurons based on their crosscorrelation functions. These analyses identified distinct, putative classes of functional interactions within the full population. These classes of functional interactions were corroborated by their unique distributions across defined laminar compartments and were consistent with known properties of V1 cortical circuitry, such as the lead-lag relationship between simple and complex cells. Our results provide a clear proof-of-principle for the use of high-density neurophysiological recordings to assess circuit-level interactions within local neuronal networks.
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Affiliation(s)
- Ethan B Trepka
- Department of Neurobiology, Howard Hughes Medical Institute, Stanford UniversityStanfordUnited States
- Neurosciences Program, Stanford UniversityStanfordUnited States
| | - Shude Zhu
- Department of Neurobiology, Howard Hughes Medical Institute, Stanford UniversityStanfordUnited States
| | - Ruobing Xia
- Department of Neurobiology, Howard Hughes Medical Institute, Stanford UniversityStanfordUnited States
| | - Xiaomo Chen
- Department of Neurobiology, Howard Hughes Medical Institute, Stanford UniversityStanfordUnited States
- Center for Neuroscience, Department of Neurobiology, Physiology, and Behavior, University of California, DavisDavisUnited States
| | - Tirin Moore
- Department of Neurobiology, Howard Hughes Medical Institute, Stanford UniversityStanfordUnited States
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Vanni S, Hokkanen H, Werner F, Angelucci A. Anatomy and Physiology of Macaque Visual Cortical Areas V1, V2, and V5/MT: Bases for Biologically Realistic Models. Cereb Cortex 2020; 30:3483-3517. [PMID: 31897474 PMCID: PMC7233004 DOI: 10.1093/cercor/bhz322] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2019] [Revised: 12/02/2019] [Indexed: 12/22/2022] Open
Abstract
The cerebral cortex of primates encompasses multiple anatomically and physiologically distinct areas processing visual information. Areas V1, V2, and V5/MT are conserved across mammals and are central for visual behavior. To facilitate the generation of biologically accurate computational models of primate early visual processing, here we provide an overview of over 350 published studies of these three areas in the genus Macaca, whose visual system provides the closest model for human vision. The literature reports 14 anatomical connection types from the lateral geniculate nucleus of the thalamus to V1 having distinct layers of origin or termination, and 194 connection types between V1, V2, and V5, forming multiple parallel and interacting visual processing streams. Moreover, within V1, there are reports of 286 and 120 types of intrinsic excitatory and inhibitory connections, respectively. Physiologically, tuning of neuronal responses to 11 types of visual stimulus parameters has been consistently reported. Overall, the optimal spatial frequency (SF) of constituent neurons decreases with cortical hierarchy. Moreover, V5 neurons are distinct from neurons in other areas for their higher direction selectivity, higher contrast sensitivity, higher temporal frequency tuning, and wider SF bandwidth. We also discuss currently unavailable data that could be useful for biologically accurate models.
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Affiliation(s)
- Simo Vanni
- HUS Neurocenter, Department of Neurology, Helsinki University Hospital, 00290 Helsinki, Finland
- Department of Neurosciences, University of Helsinki, 00100 Helsinki, Finland
| | - Henri Hokkanen
- HUS Neurocenter, Department of Neurology, Helsinki University Hospital, 00290 Helsinki, Finland
- Department of Neurosciences, University of Helsinki, 00100 Helsinki, Finland
| | - Francesca Werner
- HUS Neurocenter, Department of Neurology, Helsinki University Hospital, 00290 Helsinki, Finland
- Department of Neurosciences, University of Helsinki, 00100 Helsinki, Finland
- Department of Biomedical and Neuromotor Sciences, University of Bologna, 40126 Bologna, Italy
| | - Alessandra Angelucci
- Department of Ophthalmology and Visual Sciences, Moran Eye Institute, University of Utah, Salt Lake City, UT 84132, USA
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Morphological Cell Types Projecting from V1 Layer 4B to V2 Thick and Thin Stripes. J Neurosci 2019; 39:7501-7512. [PMID: 31358652 DOI: 10.1523/jneurosci.1096-19.2019] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2019] [Revised: 07/16/2019] [Accepted: 07/19/2019] [Indexed: 11/21/2022] Open
Abstract
In macaque visual cortex, different cytochrome oxidase stripes of area V2 receive segregated projections from layers (L)2/3 and 4B of the primary visual cortex (V1), and project to dorsal or ventral stream extrastriate areas. Parallel V1-to-V2 pathways suggest functionally specialized circuits, but it is unknown whether these circuits arise from distinct cell types. V1 L4B includes two morphological types of excitatory projection neurons: pyramids, which carry mixed magnocellular (M) and parvocellular (P) information to downstream areas, and spiny stellates, which carry only M information. Previous studies have shown that, overall, V2 receives ∼80% of its L4B inputs from pyramids, thus receiving mixed M and P signals. However, it is unknown how pyramids and stellates distribute their outputs to the different V2 stripes, and whether different stripes receive inputs from morphologically distinct neuron types. Using viral-mediated labeling of V2-projecting L4B neurons in male macaques, we show that thick stripes receive a greater contribution of L4B inputs from M-dominated spiny stellates compared with thin stripes. Both stripe types, however, receive a much larger contribution from spiny stellates than previously shown for V2 overall, indicating that a larger amount of M information than previously thought flows into both the dorsal and ventral streams via the V2 thick and thin stripes, respectively. Moreover, we identify four types of V2-projecting L4B cells differing in size and complexity. Three such cell types project to both thin and thick stripes, but one type, the giant spiny-stellate neuron, resembling L4B neurons projecting to motion-sensitive area MT, was only found to project to thick stripes.SIGNIFICANCE STATEMENT Area V1 partitions visual information into functionally specialized parallel pathways which terminate into distinct stripes of area V2. We asked whether V1 inputs to different V2 stripes arise from morphologically different cell types. V1 layer (L)4B has two cell types: pyramids, which carry both magnocellular (M) and parvocellular (P) visual signals, and spiny stellates, which carry only M signals. We find that V2 thick stripes, which project to areas processing object motion, receive a larger fraction of L4B input from M-dominated stellates compared with thin stripes, which project to areas processing object attributes. We also identify four morphological types of V2-projecting L4B neurons, suggestive of four functionally specialized cell types.
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Abstract
Primate visual cortex is organized into columns that process different features of a visual scene, such as color, orientation preference, and ocular dominance. Until now, their small size has made it difficult to modulate them directly. Here, we report for the first time that focal targeting of light-sensitive ion channels (channelrhodopsins) in macaques using lentiviral vectors allows one to stimulate functional domains. We show that such targeted stimulation leads to selective activation of anatomically connected neighboring domains with similar function. Such a fine-scale optical stimulation approach is capable of mapping functionally specific domain-based neuronal networks. Its potential for linking such networks to optogenetic modulation of perception and behavior opens doors for developing targeted, domain-based neuroprosthetics. In primates, visual perception is mediated by brain circuits composed of submillimeter nodes linked together in specific networks that process different types of information, such as eye specificity and contour orientation. We hypothesized that optogenetic stimulation targeted to cortical nodes could selectively activate such cortical networks. We used viral transfection methods to confer light sensitivity to neurons in monkey primary visual cortex. Using intrinsic signal optical imaging and single-unit electrophysiology to assess effects of targeted optogenetic stimulation, we found that (i) optogenetic stimulation of single ocular dominance columns (eye-specific nodes) revealed preferential activation of nearby same-eye columns but not opposite-eye columns, and (ii) optogenetic stimulation of single orientation domains increased visual response of matching orientation domains and relatively suppressed nonmatching orientation selectivity. These findings demonstrate that optical stimulation of single nodes leads to modulation of functionally specific cortical networks related to underlying neural architecture.
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Pálfi E, Zalányi L, Ashaber M, Palmer C, Kántor O, Roe AW, Friedman RM, Négyessy L. Connectivity of neuronal populations within and between areas of primate somatosensory cortex. Brain Struct Funct 2018; 223:2949-2971. [PMID: 29725759 DOI: 10.1007/s00429-018-1671-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2017] [Accepted: 04/21/2018] [Indexed: 11/25/2022]
Abstract
Functions of the cerebral cortex emerge via interactions of horizontally distributed neuronal populations within and across areas. However, the connectional underpinning of these interactions is not well understood. The present study explores the circuitry of column-size cortical domains within the hierarchically organized somatosensory cortical areas 3b and 1 using tract tracing and optical intrinsic signal imaging (OIS). The anatomical findings reveal that feedforward connections exhibit high topographic specificity, while intrinsic and feedback connections have a more widespread distribution. Both intrinsic and inter-areal connections are topographically oriented across the finger representations. Compared to area 3b, the low clustering of connections and small cortical magnification factor supports that the circuitry of area 1 scaffolds a sparse functional representation that integrates peripheral information from a large area that is fed back to area 3b. Fast information exchange between areas is ensured by thick axons forming a topographically organized, reciprocal pathway. Moreover, the highest density of projecting neurons and groups of axon arborization patches corresponds well with the size and locations of the functional population response reported by OIS. The findings establish connectional motifs at the mesoscopic level that underpin the functional organization of the cerebral cortex.
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Affiliation(s)
- E Pálfi
- Department of Anatomy, Histology and Embryology, Semmelweis University, Budapest, 1094, Hungary
| | - L Zalányi
- Complex Systems and Computational Neuroscience Group, Wigner Research Centre for Physics, Hungarian Academy of Sciences, Konkoly-Thege Miklós út 29-33, Budapest, 1121, Hungary
| | - M Ashaber
- Department of Physiology and Biochemistry, Faculty of Veterinary Science, Szent István University, Budapest, 1078, Hungary
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125, USA
| | - C Palmer
- Department of Mathematical Sciences, University of Montana, Missoula, MT, 59812, USA
| | - O Kántor
- Department of Anatomy, Histology and Embryology, Semmelweis University, Budapest, 1094, Hungary
- Department of Neuroanatomy, Faculty of Medicine, Institute of Anatomy and Cell Biology, University of Freiburg, 79104, Freiburg, Germany
| | - A W Roe
- Division of Neuroscience, Oregon Health and Science University, Portland, OR, 97006, USA
- Interdisciplinary Institute of Neuroscience and Technology, Zhejiang University, Hangzhou, 310029, China
| | - R M Friedman
- Division of Neuroscience, Oregon Health and Science University, Portland, OR, 97006, USA
| | - L Négyessy
- Department of Anatomy, Histology and Embryology, Semmelweis University, Budapest, 1094, Hungary.
- Complex Systems and Computational Neuroscience Group, Wigner Research Centre for Physics, Hungarian Academy of Sciences, Konkoly-Thege Miklós út 29-33, Budapest, 1121, Hungary.
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