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Barta T, Monsempès C, Demondion E, Chatterjee A, Kostal L, Lucas P. Stimulus duration encoding occurs early in the moth olfactory pathway. Commun Biol 2024; 7:1252. [PMID: 39363042 DOI: 10.1038/s42003-024-06921-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Accepted: 09/18/2024] [Indexed: 10/05/2024] Open
Abstract
Pheromones convey rich ethological information and guide insects' search behavior. Insects navigating in turbulent environments are tasked with the challenge of coding the temporal structure of an odor plume, obliging recognition of the onset and offset of whiffs of odor. The coding mechanisms that shape odor offset recognition remain elusive. We designed a device to deliver sharp pheromone pulses and simultaneously measured the response dynamics from pheromone-tuned olfactory receptor neurons (ORNs) in male moths and Drosophila. We show that concentration-invariant stimulus duration encoding is implemented in moth ORNs by spike frequency adaptation at two time scales. A linear-nonlinear model fully captures the underlying neural computations and offers an insight into their biophysical mechanisms. Drosophila use pheromone cis-vaccenyl acetate (cVA) only for very short distance communication and are not faced with the need to encode the statistics of the cVA plume. Their cVA-sensitive ORNs are indeed unable to encode odor-off events. Expression of moth pheromone receptors in Drosophila cVA-sensitive ORNs indicates that stimulus-offset coding is receptor independent. In moth ORNs, stimulus-offset coding breaks down for short ( < 200 ms) whiffs. This physiological constraint matches the behavioral latency of switching from the upwind surge to crosswind cast flight upon losing contact with the pheromone.
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Affiliation(s)
- Tomas Barta
- Department of Sensory Ecology, Institute of Ecology and Environmental Sciences of Paris, INRAE, Sorbonne Université, CNRS, IRD, UPEC, Université de Paris, Route de Saint Cyr, Versailles, 78000, France.
- Laboratory of Computational Neuroscience, Institute of Physiology of the Czech Academy of Sciences, Vídeňská 1083, Prague, 14220, Czech Republic.
- Neural Coding and Brain Computing Unit, Okinawa Institute of Science and Technology, 1919-1 Tancha, Onna, 904-0412, Okinawa, Japan.
| | - Christelle Monsempès
- Department of Sensory Ecology, Institute of Ecology and Environmental Sciences of Paris, INRAE, Sorbonne Université, CNRS, IRD, UPEC, Université de Paris, Route de Saint Cyr, Versailles, 78000, France
| | - Elodie Demondion
- Department of Sensory Ecology, Institute of Ecology and Environmental Sciences of Paris, INRAE, Sorbonne Université, CNRS, IRD, UPEC, Université de Paris, Route de Saint Cyr, Versailles, 78000, France
| | - Abhishek Chatterjee
- Department of Sensory Ecology, Institute of Ecology and Environmental Sciences of Paris, INRAE, Sorbonne Université, CNRS, IRD, UPEC, Université de Paris, Route de Saint Cyr, Versailles, 78000, France
| | - Lubomir Kostal
- Laboratory of Computational Neuroscience, Institute of Physiology of the Czech Academy of Sciences, Vídeňská 1083, Prague, 14220, Czech Republic.
| | - Philippe Lucas
- Department of Sensory Ecology, Institute of Ecology and Environmental Sciences of Paris, INRAE, Sorbonne Université, CNRS, IRD, UPEC, Université de Paris, Route de Saint Cyr, Versailles, 78000, France.
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2
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Belcher S, Flores-Iga G, Natarajan P, Crummett G, Talavera-Caro A, Gracia-Rodriguez C, Lopez-Ortiz C, Das A, Adjeroh DA, Nimmakayala P, Balagurusamy N, Reddy UK. Dietary Curcumin Intake and Its Effects on the Transcriptome and Metabolome of Drosophila melanogaster. Int J Mol Sci 2024; 25:6559. [PMID: 38928266 PMCID: PMC11203963 DOI: 10.3390/ijms25126559] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2024] [Revised: 06/01/2024] [Accepted: 06/11/2024] [Indexed: 06/28/2024] Open
Abstract
Curcumin, a polyphenol derived from Curcuma longa, used as a dietary spice, has garnered attention for its therapeutic potential, including antioxidant, anti-inflammatory, and antimicrobial properties. Despite its known benefits, the precise mechanisms underlying curcumin's effects on consumers remain unclear. To address this gap, we employed the genetic model Drosophila melanogaster and leveraged two omics tools-transcriptomics and metabolomics. Our investigation revealed alterations in 1043 genes and 73 metabolites upon supplementing curcumin into the diet. Notably, we observed genetic modulation in pathways related to antioxidants, carbohydrates, and lipids, as well as genes associated with gustatory perception and reproductive processes. Metabolites implicated in carbohydrate metabolism, amino acid biosynthesis, and biomarkers linked to the prevention of neurodegenerative diseases such as schizophrenia, Alzheimer's, and aging were also identified. The study highlighted a strong correlation between the curcumin diet, antioxidant mechanisms, and amino acid metabolism. Conversely, a lower correlation was observed between carbohydrate metabolism and cholesterol biosynthesis. This research highlights the impact of curcumin on the diet, influencing perception, fertility, and molecular wellness. Furthermore, it directs future studies toward a more focused exploration of the specific effects of curcumin consumption.
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Affiliation(s)
- Samantha Belcher
- Department of Biology, Gus R. Douglass Institute, West Virginia State University, Institute, WV 25112, USA; (S.B.); (G.F.-I.); (P.N.); (G.C.); (A.T.-C.); (C.G.-R.); (C.L.-O.); (A.D.); (P.N.)
| | - Gerardo Flores-Iga
- Department of Biology, Gus R. Douglass Institute, West Virginia State University, Institute, WV 25112, USA; (S.B.); (G.F.-I.); (P.N.); (G.C.); (A.T.-C.); (C.G.-R.); (C.L.-O.); (A.D.); (P.N.)
| | - Purushothaman Natarajan
- Department of Biology, Gus R. Douglass Institute, West Virginia State University, Institute, WV 25112, USA; (S.B.); (G.F.-I.); (P.N.); (G.C.); (A.T.-C.); (C.G.-R.); (C.L.-O.); (A.D.); (P.N.)
| | - Garrett Crummett
- Department of Biology, Gus R. Douglass Institute, West Virginia State University, Institute, WV 25112, USA; (S.B.); (G.F.-I.); (P.N.); (G.C.); (A.T.-C.); (C.G.-R.); (C.L.-O.); (A.D.); (P.N.)
| | - Alicia Talavera-Caro
- Department of Biology, Gus R. Douglass Institute, West Virginia State University, Institute, WV 25112, USA; (S.B.); (G.F.-I.); (P.N.); (G.C.); (A.T.-C.); (C.G.-R.); (C.L.-O.); (A.D.); (P.N.)
| | - Celeste Gracia-Rodriguez
- Department of Biology, Gus R. Douglass Institute, West Virginia State University, Institute, WV 25112, USA; (S.B.); (G.F.-I.); (P.N.); (G.C.); (A.T.-C.); (C.G.-R.); (C.L.-O.); (A.D.); (P.N.)
- Laboratorio de Biorremediación, Facultad de Ciencias Biológicas, Universidad Autónoma de Coahuila, Torreón 27275, Coahuila, Mexico
| | - Carlos Lopez-Ortiz
- Department of Biology, Gus R. Douglass Institute, West Virginia State University, Institute, WV 25112, USA; (S.B.); (G.F.-I.); (P.N.); (G.C.); (A.T.-C.); (C.G.-R.); (C.L.-O.); (A.D.); (P.N.)
| | - Amartya Das
- Department of Biology, Gus R. Douglass Institute, West Virginia State University, Institute, WV 25112, USA; (S.B.); (G.F.-I.); (P.N.); (G.C.); (A.T.-C.); (C.G.-R.); (C.L.-O.); (A.D.); (P.N.)
| | - Donald A. Adjeroh
- Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV 26506, USA;
| | - Padma Nimmakayala
- Department of Biology, Gus R. Douglass Institute, West Virginia State University, Institute, WV 25112, USA; (S.B.); (G.F.-I.); (P.N.); (G.C.); (A.T.-C.); (C.G.-R.); (C.L.-O.); (A.D.); (P.N.)
| | - Nagamani Balagurusamy
- Laboratorio de Biorremediación, Facultad de Ciencias Biológicas, Universidad Autónoma de Coahuila, Torreón 27275, Coahuila, Mexico
| | - Umesh K. Reddy
- Department of Biology, Gus R. Douglass Institute, West Virginia State University, Institute, WV 25112, USA; (S.B.); (G.F.-I.); (P.N.); (G.C.); (A.T.-C.); (C.G.-R.); (C.L.-O.); (A.D.); (P.N.)
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3
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Perry S, Clark JT, Ngo P, Ray A. Receptors underlying an odorant's valence across concentrations in Drosophila larvae. J Exp Biol 2024; 227:jeb247215. [PMID: 38511428 PMCID: PMC11166451 DOI: 10.1242/jeb.247215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Accepted: 03/06/2024] [Indexed: 03/22/2024]
Abstract
Odorants interact with receptors expressed in specialized olfactory neurons, and neurons of the same class send their axons to distinct glomeruli in the brain. The stereotypic spatial glomerular activity map generates recognition and the behavioral response for the odorant. The valence of an odorant changes with concentration, typically becoming aversive at higher concentrations. Interestingly, in Drosophila larvae, the odorant (E)-2-hexenal is aversive at low concentrations and attractive at higher concentrations. We investigated the molecular and neural basis of this phenomenon, focusing on how activities of different olfactory neurons conveying opposing effects dictate behaviors. We identified the repellant neuron in the larvae as one expressing the olfactory receptor Or7a, whose activation alone at low concentrations of (E)-2-hexenal elicits an avoidance response in an Or7a-dependent manner. We demonstrate that avoidance can be overcome at higher concentrations by activation of additional neurons that are known to be attractive, most notably odorants that are known activators of Or42a and Or85c. These findings suggest that in the larval stage, the attraction-conveying neurons can overcome the aversion-conveying channels for (E)-2-hexenal.
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Affiliation(s)
- Sarah Perry
- Graduate program in Genetics, Genomics, and Bioinformatics, University of California, Riverside, Riverside, CA 92521, USA
| | - Jonathan T. Clark
- Interdepartmental Neuroscience Program, University of California, Riverside, Riverside, CA 92521, USA
| | - Paulina Ngo
- Department of Molecular Cell and Systems Biology, University of California, Riverside, Riverside, CA 92521, USA
| | - Anandasankar Ray
- Graduate program in Genetics, Genomics, and Bioinformatics, University of California, Riverside, Riverside, CA 92521, USA
- Interdepartmental Neuroscience Program, University of California, Riverside, Riverside, CA 92521, USA
- Department of Molecular Cell and Systems Biology, University of California, Riverside, Riverside, CA 92521, USA
- Center for Disease Vector Research, University of California, Riverside, Riverside, CA 92521, USA
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Tanaka K, Ozawa R, Takabayashi J, Ochiai M, Hayakawa Y. Booklice Liposcelis bostrychophila are efficiently attracted by the combination of 2,3,5,6-tetramethylpyrazine and ultraviolet light. PEST MANAGEMENT SCIENCE 2024; 80:426-432. [PMID: 37714819 DOI: 10.1002/ps.7773] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Revised: 09/09/2023] [Accepted: 09/13/2023] [Indexed: 09/17/2023]
Abstract
BACKGROUND Booklice Liposcelis bostrychophila are frequently found almost everywhere, including private houses and cleanrooms of factories and institutes. They often cause serious hygienic as well as agricultural problems, but a useful trap has not been developed so far. Therefore, an effective way to monitor and capture booklice is required. RESULTS We here identified a new attractant, 2,3,5,6-tetramethylpyrazine (TMP), which efficiently captured booklice in combination with UV light. When booklice placed at both right and left edges of an assay tray were exposed to light stimulus from the center, test insects gathered at the center. The attraction was stronger with shorter wavelengths than longer ones: 365-nm ultraviolet (UV) light showed the strongest attraction of four tested light wavelengths. We found that cocoa powder attracted booklice weakly but significantly under total darkness. Furthermore, the cocoa smell was confirmed to enhance the attraction to light at all tested wavelengths irrespective of the difference between two brands of cocoa powders. Gas chromatography-mass spectrometry indicated that both cocoa products contain TMP as a major odor compound. Exposure of booklice to TMP significantly enhanced the attraction to UV light: the combined use with TMP almost doubled the attraction compared to the light only. By contrast, TMP homologs, pyrazine and dimethylpyrazines, showed strong repellent activities under UV light exposure. CONCLUSION TMP enhanced the UV light attraction for booklice while pyrazine and dimethylpyrazines diminished it. Use of these attractant and repellent pyrazine derivatives together with UV light would enable us to develop a practical new way to monitor and capture booklice. © 2023 Society of Chemical Industry.
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Affiliation(s)
| | - Rika Ozawa
- Center for Ecological Research, Kyoto University, Otsu, Japan
| | | | - Masanori Ochiai
- Institute of Low Temperature Science, Hokkaido University, Sapporo, Japan
| | - Yoichi Hayakawa
- Fuji Environmental Services, Inc., Shizuoka, Japan
- Department of Applied Biological Sciences, Saga University, Saga, Japan
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Lee S, Eom S, Pyeon M, Moon M, Yun J, Lee J, Choi YS, Lee JH. Identification of 2,4-Di- tert-butylphenol as a Novel Agonist for Insect Odorant Receptors. Int J Mol Sci 2023; 25:220. [PMID: 38203390 PMCID: PMC10779170 DOI: 10.3390/ijms25010220] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Revised: 12/19/2023] [Accepted: 12/21/2023] [Indexed: 01/12/2024] Open
Abstract
Odorant molecules interact with odorant receptors (ORs) lining the pores on the surface of the sensilla on an insect's antennae and maxillary palps. This interaction triggers an electrical signal that is transmitted to the insect's nervous system, thereby influencing its behavior. Orco, an OR coreceptor, is crucial for olfactory transduction, as it possesses a conserved sequence across the insect lineage. In this study, we focused on 2,4-di-tert-butylphenol (DTBP), a single substance present in acetic acid bacteria culture media. We applied DTBP to oocytes expressing various Drosophila melanogaster odor receptors and performed electrophysiology experiments. After confirming the activation of DTBP on the receptor, the binding site was confirmed through point mutations. Our findings confirmed that DTBP interacts with the insect Orco subunit. The 2-heptanone, octanol, and 2-hexanol were not activated for the Orco homomeric channel, but DTBP was activated, and the EC50 value was 13.4 ± 3.0 μM. Point mutations were performed and among them, when the W146 residue changed to alanine, the Emax value was changed from 1.0 ± 0 in the wild type to 0.0 ± 0 in the mutant type, and all activity was decreased. Specifically, DTBP interacted with the W146 residue of the Orco subunit, and the activation manner was concentration-dependent and voltage-independent. This molecular-level analysis provides the basis for novel strategies to minimize pest damage. DTBP, with its specific binding to the Orco subunit, shows promise as a potential pest controller that can exclusively target insects.
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Affiliation(s)
- Shinhui Lee
- Department of Biotechnology, Chonnam National University, Gwangju 61186, Republic of Korea; (S.L.); (S.E.); (J.Y.)
| | - Sanung Eom
- Department of Biotechnology, Chonnam National University, Gwangju 61186, Republic of Korea; (S.L.); (S.E.); (J.Y.)
| | - Minsu Pyeon
- Department of Biotechnology, Chonnam National University, Gwangju 61186, Republic of Korea; (S.L.); (S.E.); (J.Y.)
| | - Myungmi Moon
- Department of Biotechnology, Chonnam National University, Gwangju 61186, Republic of Korea; (S.L.); (S.E.); (J.Y.)
| | - Jihwon Yun
- Department of Biotechnology, Chonnam National University, Gwangju 61186, Republic of Korea; (S.L.); (S.E.); (J.Y.)
| | - Jaehyeong Lee
- Organic Agriculture Division, National Institute of Agricultural Sciences, Wanju 55365, Republic of Korea;
| | - Yong-Seok Choi
- Bioenvironmental Division, Chungnam Agricultural Research and Extension Services, Yesan 32418, Republic of Korea
| | - Junho H. Lee
- Department of Biotechnology, Chonnam National University, Gwangju 61186, Republic of Korea; (S.L.); (S.E.); (J.Y.)
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6
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Abstract
The olfactory system translates chemical signals into neuronal signals that inform behavioral decisions of the animal. Odors are cues for source identity, but if monitored long enough, they can also be used to localize the source. Odor representations should therefore be robust to changing conditions and flexible in order to drive an appropriate behavior. In this review, we aim at discussing the main computations that allow robust and flexible encoding of odor information in the olfactory neural pathway.
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Getahun MN, Ahuya P, Ngiela J, Orone A, Masiga D, Torto B. Shared volatile organic compounds between camel metabolic products elicits strong Stomoxys calcitrans attraction. Sci Rep 2020; 10:21454. [PMID: 33293684 PMCID: PMC7722739 DOI: 10.1038/s41598-020-78495-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2020] [Accepted: 11/20/2020] [Indexed: 11/09/2022] Open
Abstract
The sources of animal odours are highly diverse, yet their ecological importance, in host-vector communication, remains unexplored. Here, using the camel (host)-Stomoxys calcitrans (vector) interaction, we collected and analyzed the Volatile Organic Compounds (VOCs) of camels from four of its different odour sources: breath, body (skin), urine, and dung. On non-metric model multivariate analyses of VOCs we show that substantial chemo-diversity exists between metabolic products associated with an individual camel. VOCs from the four metabolic products were distinct and widely segregated. Next, we show electrophysiologically, that VOCs shared between metabolic products activated more Olfactory Sensory Neurons (OSNs) and elicited strong behavioural attractive responses from S. calcitrans under field conditions independent of geography. In our extended studies on house flies, the behavioural response to these VOCs appears to be conserved. Overall, our results establish that VOCs from a range of metabolic products determine host-vector ecological interactions and may provide a more rigorous approach for discovery of unique and more potent attractants.
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Affiliation(s)
- Merid Negash Getahun
- International Centre of Insect Physiology and Ecology (ICIPE), P.O. Box 30772‑00100, Nairobi, Kenya.
| | - Peter Ahuya
- International Centre of Insect Physiology and Ecology (ICIPE), P.O. Box 30772‑00100, Nairobi, Kenya
| | - John Ngiela
- International Centre of Insect Physiology and Ecology (ICIPE), P.O. Box 30772‑00100, Nairobi, Kenya
| | - Abel Orone
- International Centre of Insect Physiology and Ecology (ICIPE), P.O. Box 30772‑00100, Nairobi, Kenya
- Biotechnology Research Institute, Kenya Agricultural & Livestock Research Organization (KALRO), Nairobi, Kenya
| | - Daniel Masiga
- International Centre of Insect Physiology and Ecology (ICIPE), P.O. Box 30772‑00100, Nairobi, Kenya
| | - Baldwyn Torto
- International Centre of Insect Physiology and Ecology (ICIPE), P.O. Box 30772‑00100, Nairobi, Kenya
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8
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Kabaka JM, Wachira BM, Mang’era CM, Rono MK, Hassanali A, Okoth SO, Oduol VO, Macharia RW, Murilla GA, Mireji PO. Expansions of chemosensory gene orthologs among selected tsetse fly species and their expressions in Glossina morsitans morsitans tsetse fly. PLoS Negl Trop Dis 2020; 14:e0008341. [PMID: 32589659 PMCID: PMC7347240 DOI: 10.1371/journal.pntd.0008341] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2019] [Revised: 07/09/2020] [Accepted: 05/01/2020] [Indexed: 01/02/2023] Open
Abstract
Tsetse fly exhibit species-specific olfactory uniqueness potentially underpinned by differences in their chemosensory protein repertoire. We assessed 1) expansions of chemosensory protein orthologs in Glossina morsitans morsitans, Glossina pallidipes, Glossina austeni, Glossina palpalis gambiensis, Glossina fuscipes fuscipes and Glossina brevipalpis tsetse fly species using Café analysis (to identify species-specific expansions) and 2) differential expressions of the orthologs and associated proteins in male G. m. morsitans antennae and head tissues using RNA-Seq approaches (to establish associated functional molecular pathways). We established accelerated and significant (P<0.05, λ = 2.60452e-7) expansions of gene families in G. m. morsitans Odorant receptor (Or)71a, Or46a, Ir75a,d, Ionotropic receptor (Ir) 31a, Ir84a, Ir64a and Odorant binding protein (Obp) 83a-b), G. pallidipes Or67a,c, Or49a, Or92a, Or85b-c,f and Obp73a, G. f. fuscipes Ir21a, Gustatory receptor (Gr) 21a and Gr63a), G. p. gambiensis clumsy, Ir25a and Ir8a, and G. brevipalpis Ir68a and missing orthologs in each tsetse fly species. Most abundantly expressed transcripts in male G. m. morsitans included specific Or (Orco, Or56a, 65a-c, Or47b, Or67b, GMOY012254, GMOY009475, and GMOY006265), Gr (Gr21a, Gr63a, GMOY013297 and GMOY013298), Ir (Ir8a, Ir25a and Ir41a) and Obp (Obp19a, lush, Obp28a, Obp83a-b Obp44a, GMOY012275 and GMOY013254) orthologs. Most enriched biological processes in the head were associated with vision, muscle activity and neuropeptide regulations, amino acid/nucleotide metabolism and circulatory system processes. Antennal enrichments (>90% of chemosensory transcripts) included cilium-associated mechanoreceptors, chemo-sensation, neuronal controlled growth/differentiation and regeneration/responses to stress. The expanded and tsetse fly species specific orthologs includes those associated with known tsetse fly responsive ligands (4-methyl phenol, 4-propyl phenol, acetic acid, butanol and carbon dioxide) and potential tsetse fly species-specific responsive ligands (2-oxopentanoic acid, phenylacetaldehyde, hydroxycinnamic acid, 2-heptanone, caffeine, geosmin, DEET and (cVA) pheromone). Some of the orthologs can potentially modulate several tsetse fly species-specific behavioral (male-male courtship, hunger/host seeking, cool avoidance, hygrosensory and feeding) phenotypes. The putative tsetse fly specific chemosensory gene orthologs and their respective ligands provide candidate gene targets and kairomones for respective downstream functional genomic and field evaluations that can effectively expand toolbox of species-specific tsetse fly attractants, repellents and other tsetse fly behavioral modulators.
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Affiliation(s)
- Joy M. Kabaka
- Biotechnology Research Institute—Kenya Agricultural and Livestock Research Organization, Kikuyu, Kenya
- Department of Biochemistry, Microbiology and Biotechnology, School of Pure and Applied Sciences, Kenyatta University, Ruiru Campus, Nairobi, Kenya
| | - Benson M. Wachira
- Biotechnology Research Institute—Kenya Agricultural and Livestock Research Organization, Kikuyu, Kenya
- Department of Chemistry, School of Pure and Applied Sciences, Kenyatta University, Ruiru Campus, Nairobi, Kenya
| | - Clarence M. Mang’era
- Department of Biochemistry and Molecular Biology, Egerton University, Njoro Campus, Egerton, Kenya
| | - Martin K. Rono
- Centre for Geographic Medicine Research—Coast, Kenya Medical Research Institute, Kilifi, Kenya
| | - Ahmed Hassanali
- Department of Chemistry, School of Pure and Applied Sciences, Kenyatta University, Ruiru Campus, Nairobi, Kenya
| | - Sylvance O. Okoth
- Biotechnology Research Institute—Kenya Agricultural and Livestock Research Organization, Kikuyu, Kenya
| | - Vincent O. Oduol
- Department of Biochemistry, University of Nairobi, Nairobi, Kenya
| | - Rosaline W. Macharia
- Center for Bioinformatics and Biotechnology, University of Nairobi, Nairobi, Kenya
| | - Grace A. Murilla
- Biotechnology Research Institute—Kenya Agricultural and Livestock Research Organization, Kikuyu, Kenya
| | - Paul O. Mireji
- Biotechnology Research Institute—Kenya Agricultural and Livestock Research Organization, Kikuyu, Kenya
- Centre for Geographic Medicine Research—Coast, Kenya Medical Research Institute, Kilifi, Kenya
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9
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Abstract
Odorant receptors detect a vast diversity of chemical compounds and underlie many aspects of life. The structure of insect odorant receptors, however, has remained unknown. A cryo-EM study now reveals an intriguing architecture.
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Affiliation(s)
- Yichen Luo
- Dept. of Molecular, Cellular and Developmental Biology, Interdepartmental Neuroscience Program, Yale University, New Haven, CT 06520-8103, USA
| | - John R Carlson
- Dept. of Molecular, Cellular and Developmental Biology, Interdepartmental Neuroscience Program, Yale University, New Haven, CT 06520-8103, USA.
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10
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Chin SG, Maguire SE, Huoviala P, Jefferis GSXE, Potter CJ. Olfactory Neurons and Brain Centers Directing Oviposition Decisions in Drosophila. Cell Rep 2020; 24:1667-1678. [PMID: 30089274 PMCID: PMC6290906 DOI: 10.1016/j.celrep.2018.07.018] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2017] [Revised: 04/30/2018] [Accepted: 07/04/2018] [Indexed: 01/19/2023] Open
Abstract
The sense of smell influences many behaviors, yet how odors are represented in the brain remains unclear. A major challenge to studying olfaction is the lack of methods allowing activation of specific types of olfactory neurons in an ethologically relevant setting. To address this, we developed a genetic method in Drosophila called olfactogenetics in which a narrowly tuned odorant receptor, Or56a, is ectopically expressed in different olfactory neuron types. Stimulation with geosmin (the only known Or56a ligand) in an Or56a mutant background leads to specific activation of only target olfactory neuron types. We used this approach to identify olfactory sensory neurons (OSNs) that directly guide oviposition decisions. We identify 5 OSN-types (Or71a, Or47b, Or49a, Or67b, and Or7a) that, when activated alone, suppress oviposition. Projection neurons partnering with these OSNs share a region of innervation in the lateral horn, suggesting that oviposition site selection might be encoded in this brain region.
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Affiliation(s)
- Sonia G Chin
- Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, 855 N. Wolfe Street, Baltimore, MD 21205, USA
| | - Sarah E Maguire
- Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, 855 N. Wolfe Street, Baltimore, MD 21205, USA
| | - Paavo Huoviala
- Division of Neurobiology, MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 OQH, UK
| | - Gregory S X E Jefferis
- Division of Neurobiology, MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 OQH, UK
| | - Christopher J Potter
- Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, 855 N. Wolfe Street, Baltimore, MD 21205, USA.
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11
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Dang V, Cohanim AB, Fontana S, Privman E, Wang J. Has gene expression neofunctionalization in the fire ant antennae contributed to queen discrimination behavior? Ecol Evol 2019; 9:12754-12766. [PMID: 31788211 PMCID: PMC6875580 DOI: 10.1002/ece3.5748] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2019] [Revised: 09/18/2019] [Accepted: 09/23/2019] [Indexed: 12/12/2022] Open
Abstract
Queen discrimination behavior in the fire ant Solenopsis invicta maintains its two types of societies: colonies with one (monogyne) or many (polygyne) queens, yet the underlying genetic mechanism is poorly understood. This behavior is controlled by two supergene alleles, SB and Sb, with ~600 genes. Polygyne workers, having either the SB/SB or SB/Sb genotype, accept additional SB/Sb queens into their colonies but kill SB/SB queens. In contrast, monogyne workers, all SB/SB, reject all additional queens regardless of genotype. Because the SB and Sb alleles have suppressed recombination, determining which genes within the supergene mediate this differential worker behavior is difficult. We hypothesized that the alternate worker genotypes sense queens differently because of the evolution of differential expression of key genes in their main sensory organ, the antennae. To identify such genes, we sequenced RNA from four replicates of pooled antennae from three classes of workers: monogyne SB/SB, polygyne SB/SB, and polygyne SB/Sb. We identified 81 differentially expressed protein-coding genes with 13 encoding potential chemical metabolism or perception proteins. We focused on the two odorant perception genes: an odorant receptor SiOR463 and an odorant-binding protein SiOBP12. We found that SiOR463 has been lost in the Sb genome. In contrast, SiOBP12 has an Sb-specific duplication, SiOBP12b', which is expressed in the SB/Sb worker antennae, while both paralogs are expressed in the body. Comparisons with another fire ant species revealed that SiOBP12b' antennal expression is specific to S. invicta and suggests that queen discrimination may have evolved, in part, through expression neofunctionalization.
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Affiliation(s)
- Viet‐Dai Dang
- Biodiversity Research CenterAcademia SinicaTaipeiTaiwan
- Biodiversity Taiwan International Graduate Program, Biodiversity Research CenterAcademia SinicaTaipeiTaiwan
- Department of Life ScienceNational Taiwan Normal UniversityTaipeiTaiwan
- Department of ZoologySouthern Institute of EcologyVietnam Academy of Science and TechnologyHochiminhVietnam
| | - Amir B. Cohanim
- Department of Evolutionary and Environmental BiologyInstitute of EvolutionUniversity of HaifaHaifaIsrael
| | - Silvia Fontana
- Biodiversity Research CenterAcademia SinicaTaipeiTaiwan
- Biodiversity Taiwan International Graduate Program, Biodiversity Research CenterAcademia SinicaTaipeiTaiwan
- Department of Life ScienceNational Taiwan Normal UniversityTaipeiTaiwan
| | - Eyal Privman
- Department of Evolutionary and Environmental BiologyInstitute of EvolutionUniversity of HaifaHaifaIsrael
| | - John Wang
- Biodiversity Research CenterAcademia SinicaTaipeiTaiwan
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12
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Chepurwar S, Gupta A, Haddad R, Gupta N. Sequence-Based Prediction of Olfactory Receptor Responses. Chem Senses 2019; 44:693-703. [PMID: 31665762 DOI: 10.1093/chemse/bjz059] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Computational prediction of how strongly an olfactory receptor (OR) responds to various odors can help in bridging the widening gap between the large number of receptors that have been sequenced and the small number of experiments measuring their responses. Previous efforts in this area have predicted the responses of a receptor to some odors, using the known responses of the same receptor to other odors. Here, we present a method to predict the responses of a receptor without any known responses by using available data about the responses of other conspecific receptors and their sequences. We applied this method to ORs in insects Drosophila melanogaster (both adult and larva) and Anopheles gambiae and to mouse and human ORs. We found the predictions to be in significant agreement with the experimental measurements. The method also provides clues about the response-determining positions within the receptor sequences.
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Affiliation(s)
- Shashank Chepurwar
- Department of Biological Sciences and Bioengineering, Indian Institute of Technology Kanpur, Kanpur, Uttar Pradesh, India
| | - Abhishek Gupta
- Department of Biological Sciences and Bioengineering, Indian Institute of Technology Kanpur, Kanpur, Uttar Pradesh, India.,Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur, Uttar Pradesh, India
| | - Rafi Haddad
- The Gonda Multidisciplinary Brain Research Center, Bar-Ilan University, Ramat-Gan, Israel
| | - Nitin Gupta
- Department of Biological Sciences and Bioengineering, Indian Institute of Technology Kanpur, Kanpur, Uttar Pradesh, India
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13
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Kadakia N, Emonet T. Front-end Weber-Fechner gain control enhances the fidelity of combinatorial odor coding. eLife 2019; 8:e45293. [PMID: 31251174 PMCID: PMC6609331 DOI: 10.7554/elife.45293] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2019] [Accepted: 06/26/2019] [Indexed: 11/13/2022] Open
Abstract
We showed previously (Gorur-Shandilya et al., 2017) that Drosophila olfactory receptor neurons (ORNs) expressing the co-receptor Orco scale their gain inversely with mean odor intensity according to Weber-Fechner's law. Here, we show that this front-end adaptation promotes the reconstruction of odor identity from dynamic odor signals, even in the presence of confounding background odors and rapid intensity fluctuations. These enhancements are further aided by known downstream transformations in the antennal lobe and mushroom body. Our results, which are applicable to various odor classification and reconstruction schemes, stem from the fact that this adaptation mechanism is not intrinsic to the identity of the receptor involved. Instead, a feedback mechanism adjusts receptor sensitivity based on the activity of the receptor-Orco complex, according to Weber-Fechner's law. Thus, a common scaling of the gain across Orco-expressing ORNs may be a key feature of ORN adaptation that helps preserve combinatorial odor codes in naturalistic landscapes.
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Affiliation(s)
- Nirag Kadakia
- Department of Molecular, Cellular and Developmental BiologyYale UniversityNew HavenUnited States
| | - Thierry Emonet
- Department of Molecular, Cellular and Developmental BiologyYale UniversityNew HavenUnited States
- Department of PhysicsYale UniversityNew HavenUnited States
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14
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Slankster E, Odell SR, Mathew D. Strength in diversity: functional diversity among olfactory neurons of the same type. J Bioenerg Biomembr 2019; 51:65-75. [PMID: 30604088 PMCID: PMC6382560 DOI: 10.1007/s10863-018-9779-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2018] [Accepted: 11/13/2018] [Indexed: 01/01/2023]
Abstract
Most animals depend upon olfaction to find food, mates, and to avoid predators. An animal's olfactory circuit helps it sense its olfactory environment and generate critical behavioral responses. The general architecture of the olfactory circuit, which is conserved across species, is made up of a few different neuronal types including first-order receptor neurons, second- and third-order neurons, and local interneurons. Each neuronal type differs in their morphology, physiology, and neurochemistry. However, several recent studies have suggested that there is intrinsic diversity even among neurons of the same type and that this diversity is important for neural function. In this review, we first examine instances of intrinsic diversity observed among individual types of olfactory neurons. Next, we review potential genetic and experience-based plasticity mechanisms that underlie this diversity. Finally, we consider the implications of intrinsic neuronal diversity for circuit function. Overall, we hope to highlight the importance of intrinsic diversity as a previously underestimated property of circuit function.
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Affiliation(s)
- Eryn Slankster
- Department of Biology, University of Nevada, 1664 N. Virginia St., MS: 0314, Reno, NV, 89557, USA
| | - Seth R Odell
- Department of Biology, University of Nevada, 1664 N. Virginia St., MS: 0314, Reno, NV, 89557, USA
- Integrated Neuroscience Program, University of Nevada, Reno, NV, 89557, USA
| | - Dennis Mathew
- Department of Biology, University of Nevada, 1664 N. Virginia St., MS: 0314, Reno, NV, 89557, USA.
- Integrated Neuroscience Program, University of Nevada, Reno, NV, 89557, USA.
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15
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Clark DA, Odell SR, Armstrong JM, Turcotte M, Kohler D, Mathis A, Schmidt DR, Mathew D. Behavior Responses to Chemical and Optogenetic Stimuli in Drosophila Larvae. Front Behav Neurosci 2018; 12:324. [PMID: 30622461 PMCID: PMC6308144 DOI: 10.3389/fnbeh.2018.00324] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Accepted: 12/10/2018] [Indexed: 11/13/2022] Open
Abstract
An animal’s ability to navigate an olfactory environment is critically dependent on the activities of its first-order olfactory receptor neurons (ORNs). While considerable research has focused on ORN responses to odorants, the mechanisms by which olfactory information is encoded in the activities of ORNs and translated into navigational behavior remain poorly understood. We sought to determine the contributions of most Drosophila melanogaster larval ORNs to navigational behavior. Using odorants to activate ORNs and a larval tracking assay to measure the corresponding behavioral response, we observed that larval ORN activators cluster into four groups based on the behavior responses elicited from larvae. This is significant because it provides new insights into the functional relationship between ORN activity and behavioral response. Subsequent optogenetic analyses of a subset of ORNs revealed previously undescribed properties of larval ORNs. Furthermore, our results indicated that different temporal patterns of ORN activation elicit different behavioral outputs: some ORNs respond to stimulus increments while others respond to stimulus decrements. These results suggest that the ability of ORNs to encode temporal patterns of stimulation increases the coding capacity of the olfactory circuit. Moreover, the ability of ORNs to sense stimulus increments and decrements facilitates instantaneous evaluations of concentration changes in the environment. Together, these ORN properties enable larvae to efficiently navigate a complex olfactory environment. Ultimately, knowledge of how ORN activity patterns and their weighted contributions influence odor coding may eventually reveal how peripheral information is organized and transmitted to subsequent layers of a neural circuit.
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Affiliation(s)
- David A Clark
- Department of Biology, University of Nevada, Reno, NV, United States.,Integrated Neuroscience Graduate Program, University of Nevada, Reno, NV, United States
| | - Seth R Odell
- Department of Biology, University of Nevada, Reno, NV, United States.,Integrated Neuroscience Graduate Program, University of Nevada, Reno, NV, United States
| | - Joanna M Armstrong
- Department of Mathematics & Statistics, University of Nevada, Reno, NV, United States
| | - Mariah Turcotte
- Department of Biology, University of Nevada, Reno, NV, United States
| | - Donovan Kohler
- Department of Biology, University of Nevada, Reno, NV, United States
| | - America Mathis
- Department of Biology, University of Nevada, Reno, NV, United States
| | - Deena R Schmidt
- Integrated Neuroscience Graduate Program, University of Nevada, Reno, NV, United States.,Department of Mathematics & Statistics, University of Nevada, Reno, NV, United States
| | - Dennis Mathew
- Department of Biology, University of Nevada, Reno, NV, United States.,Integrated Neuroscience Graduate Program, University of Nevada, Reno, NV, United States
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16
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Paoli M, Münch D, Haase A, Skoulakis E, Turin L, Galizia CG. Minute Impurities Contribute Significantly to Olfactory Receptor Ligand Studies: Tales from Testing the Vibration Theory. eNeuro 2017; 4:ENEURO.0070-17.2017. [PMID: 28670618 PMCID: PMC5490255 DOI: 10.1523/eneuro.0070-17.2017] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2017] [Revised: 05/18/2017] [Accepted: 05/19/2017] [Indexed: 11/27/2022] Open
Abstract
Several studies have attempted to test the vibrational hypothesis of odorant receptor activation in behavioral and physiological studies using deuterated compounds as odorants. The results have been mixed. Here, we attempted to test how deuterated compounds activate odorant receptors using calcium imaging of the fruit fly antennal lobe. We found specific activation of one area of the antennal lobe corresponding to inputs from a specific receptor. However, upon more detailed analysis, we discovered that an impurity of 0.0006% ethyl acetate in a chemical sample of benzaldehyde-d5 was entirely responsible for a sizable odorant-evoked response in Drosophila melanogaster olfactory receptor cells expressing dOr42b. Without gas chromatographic purification within the experimental setup, this impurity would have created a difference in the responses of deuterated and nondeuterated benzaldehyde, suggesting that dOr42b be a vibration sensitive receptor, which we show here not to be the case. Our results point to a broad problem in the literature on use of non-GC-pure compounds to test receptor selectivity, and we suggest how the limitations can be overcome in future studies.
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Affiliation(s)
- M. Paoli
- Neurobiology, University of Konstanz, Konstanz, 78457, Germany
- Department of Physics and Center for Mind/Brain Sciences, University of Trento, Povo, TN 38123, Italy
| | - D. Münch
- Neurobiology, University of Konstanz, Konstanz, 78457, Germany
| | - A. Haase
- Department of Physics and Center for Mind/Brain Sciences, University of Trento, Povo, TN 38123, Italy
| | - E. Skoulakis
- Division of Neuroscience, Biomedical Sciences Research Centre Alexander Fleming, Vari 16672, Greece
| | - L. Turin
- Division of Neuroscience, Biomedical Sciences Research Centre Alexander Fleming, Vari 16672, Greece
| | - C. G. Galizia
- Neurobiology, University of Konstanz, Konstanz, 78457, Germany
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17
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Differential Contributions of Olfactory Receptor Neurons in a Drosophila Olfactory Circuit. eNeuro 2016; 3:eN-NWR-0045-16. [PMID: 27570823 PMCID: PMC4987412 DOI: 10.1523/eneuro.0045-16.2016] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2016] [Revised: 07/11/2016] [Accepted: 07/13/2016] [Indexed: 01/02/2023] Open
Abstract
The ability of an animal to detect, discriminate, and respond to odors depends on the functions of its olfactory receptor neurons (ORNs). The extent to which each ORN, upon activation, contributes to chemotaxis is not well understood. We hypothesized that strong activation of each ORN elicits a different behavioral response in the Drosophila melanogaster larva by differentially affecting the composition of its navigational behavior. To test this hypothesis, we exposed Drosophila larvae to specific odorants to analyze the effect of individual ORN activity on chemotaxis. We used two different behavioral paradigms to analyze the chemotaxis response of larvae to odorants. When tested with five different odorants that elicit strong physiological responses from single ORNs, larval behavioral responses toward each odorant differed in the strength of attraction as well as in the composition of discrete navigational elements, such as runs and turns. Further, behavioral responses to odorants did not correlate with either the strength of odor gradients tested or the sensitivity of each ORN to its cognate odorant. Finally, we provide evidence that wild-type larvae with all ORNs intact exhibit higher behavioral variance than mutant larvae that have only a single pair of functional ORNs. We conclude that individual ORNs contribute differently to the olfactory circuit that instructs chemotactic responses. Our results, along with recent studies from other groups, suggest that ORNs are functionally nonequivalent units. These results have implications for understanding peripheral odor coding.
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18
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Berck ME, Khandelwal A, Claus L, Hernandez-Nunez L, Si G, Tabone CJ, Li F, Truman JW, Fetter RD, Louis M, Samuel AD, Cardona A. The wiring diagram of a glomerular olfactory system. eLife 2016; 5. [PMID: 27177418 PMCID: PMC4930330 DOI: 10.7554/elife.14859] [Citation(s) in RCA: 116] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2016] [Accepted: 05/06/2016] [Indexed: 12/12/2022] Open
Abstract
The sense of smell enables animals to react to long-distance cues according to learned and innate valences. Here, we have mapped with electron microscopy the complete wiring diagram of the Drosophila larval antennal lobe, an olfactory neuropil similar to the vertebrate olfactory bulb. We found a canonical circuit with uniglomerular projection neurons (uPNs) relaying gain-controlled ORN activity to the mushroom body and the lateral horn. A second, parallel circuit with multiglomerular projection neurons (mPNs) and hierarchically connected local neurons (LNs) selectively integrates multiple ORN signals already at the first synapse. LN-LN synaptic connections putatively implement a bistable gain control mechanism that either computes odor saliency through panglomerular inhibition, or allows some glomeruli to respond to faint aversive odors in the presence of strong appetitive odors. This complete wiring diagram will support experimental and theoretical studies towards bridging the gap between circuits and behavior. DOI:http://dx.doi.org/10.7554/eLife.14859.001 Our sense of smell can tell us about bread being baked faraway in the kitchen, or whether a leftover piece finally went bad. Similarly to the eyes, the nose enables us to make up a mental image of what lies at a distance. In mammals, the surface of the nose hosts a huge number of olfactory sensory cells, each of which is tuned to respond to a small set of scent molecules. The olfactory sensory cells communicate with a region of the brain called the olfactory bulb. Olfactory sensory cells of the same type converge onto the same small pocket of the olfactory bulb, forming a structure called a glomerulus. Similarly to how the retina generates an image, the combined activity of multiple glomeruli defines an odor. A particular smell is the combination of many volatile compounds, the odorants. Therefore the interactions between different olfactory glomeruli are important for defining the nature of the perceived odor. Although the types of neurons involved in these interactions were known in insects, fish and mice, a precise wiring diagram of a complete set of glomeruli had not been described. In particular, the points of contact through which neurons communicate with each other – known as synapses – among all the neurons participating in an olfactory system were not known. Berck, Khandelwal et al. have now taken advantage of the small size of the olfactory system of the larvae of Drosophila fruit flies to fully describe, using high-resolution imaging, all its neurons and their synapses. The results define the complete wiring diagram of the neural circuit that processes the signals sent by olfactory sensory neurons in the larva’s olfactory circuits. In addition to the neurons that read out the activity of a single glomerulus and send it to higher areas of the brain for further processing, there are also numerous neurons that read out activity from multiple glomeruli. These neurons represent a system, encoded in the genome, for quickly extracting valuable olfactory information and then relaying it to other areas of the brain. An essential aspect of sensation is the ability to stop noticing a stimulus if it doesn't change. This allows an animal to, for example, find food by moving in a direction that increases the intensity of an odor. Inhibition mediates some aspects of this capability. The discovery of structure in the inhibitory connections among glomeruli, together with prior findings on the inner workings of the olfactory system, enabled Berck, Khandelwal et al. to hypothesize how the olfactory circuits enable odor gradients to be navigated. Further investigation revealed more about how the circuits could detect slight changes in odor concentration regardless of whether the overall odor intensity is strong or faint. And, crucially, it revealed how the worst odors – which can signal danger – can still be perceived in the presence of very strong pleasant odors. With the wiring diagram, theories about the sense of smell can now be tested using the genetic tools available for Drosophila, leading to an understanding of how neural circuits work. DOI:http://dx.doi.org/10.7554/eLife.14859.002
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Affiliation(s)
- Matthew E Berck
- Department of Physics, Harvard University, Cambridge, United States.,Center for Brain Science, Harvard University, Cambridge, United States
| | - Avinash Khandelwal
- EMBL-CRG Systems Biology Program, Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Spain.,Universitat Pompeu Fabra, Barcelona, Spain
| | - Lindsey Claus
- Department of Physics, Harvard University, Cambridge, United States.,Center for Brain Science, Harvard University, Cambridge, United States
| | - Luis Hernandez-Nunez
- Department of Physics, Harvard University, Cambridge, United States.,Center for Brain Science, Harvard University, Cambridge, United States
| | - Guangwei Si
- Department of Physics, Harvard University, Cambridge, United States.,Center for Brain Science, Harvard University, Cambridge, United States
| | | | - Feng Li
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States
| | - James W Truman
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States
| | - Rick D Fetter
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States
| | - Matthieu Louis
- EMBL-CRG Systems Biology Program, Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Spain.,Universitat Pompeu Fabra, Barcelona, Spain
| | - Aravinthan Dt Samuel
- Department of Physics, Harvard University, Cambridge, United States.,Center for Brain Science, Harvard University, Cambridge, United States
| | - Albert Cardona
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States
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19
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Odorant receptors of Drosophila are sensitive to the molecular volume of odorants. Sci Rep 2016; 6:25103. [PMID: 27112241 PMCID: PMC4844992 DOI: 10.1038/srep25103] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2015] [Accepted: 04/08/2016] [Indexed: 01/08/2023] Open
Abstract
Which properties of a molecule define its odor? This is a basic yet unanswered question regarding the olfactory system. The olfactory system of Drosophila has a repertoire of approximately 60 odorant receptors. Molecules bind to odorant receptors with different affinities and activate them with different efficacies, thus providing a combinatorial code that identifies odorants. We hypothesized that the binding affinity of an odorant-receptor pair is affected by their relative sizes. The maximum affinity can be attained when the molecular volume of an odorant matches the volume of the binding pocket. The affinity drops to zero when the sizes are too different, thus obscuring the effects of other molecular properties. We developed a mathematical formulation of this hypothesis and verified it using Drosophila data. We also predicted the volume and structural flexibility of the binding site of each odorant receptor; these features significantly differ between odorant receptors. The differences in the volumes and structural flexibilities of different odorant receptor binding sites may explain the difference in the scents of similar molecules with different sizes.
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20
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Boyle SM, McInally S, Tharadra S, Ray A. Short-term memory trace mediated by termination kinetics of olfactory receptor. Sci Rep 2016; 6:19863. [PMID: 26830661 PMCID: PMC4735300 DOI: 10.1038/srep19863] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2013] [Accepted: 12/18/2015] [Indexed: 11/23/2022] Open
Abstract
Odorants activate receptors in the peripheral olfactory neurons, which sends information to higher brain centers where behavioral valence is determined. Movement and airflow continuously change what odor plumes an animal encounters and little is known about the effect one plume has on the detection of another. Using the simple Drosophila melanogaster larval model to study this relationship we identify an unexpected phenomenon: response to an attractant can be selectively blocked by previous exposure to some odorants that activates the same receptor. At a mechanistic level, we find that exposure to this type of odorant causes prolonged tonic responses from a receptor (Or42b), which can block subsequent detection of a strong activator of that same receptor. We identify naturally occurring odorants with prolonged tonic responses for other odorant receptors (Ors) as well, suggesting that termination-kinetics is a factor for olfactory coding mechanisms. This mechanism has implications for odor-coding in any system and for designing applications to modify odor-driven behaviors.
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Affiliation(s)
- Sean Michael Boyle
- Genetics, Genomics and Bioinformatics Program, University of California, Riverside, California, CA 92521
| | - Shane McInally
- Department of Entomology, University of California, Riverside, California, CA 92521
| | - Sana Tharadra
- Department of Entomology, University of California, Riverside, California, CA 92521
| | - Anandasankar Ray
- Genetics, Genomics and Bioinformatics Program, University of California, Riverside, California, CA 92521.,Department of Entomology, University of California, Riverside, California, CA 92521.,Center for Disease Vector Research, University of California, Riverside, California, CA 92521.,Institute of Integrative Genome Biology, University of California, Riverside, California, CA 92521
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21
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Schiabor KM, Quan AS, Eisen MB. Saccharomyces cerevisiae mitochondria are required for optimal attractiveness to Drosophila melanogaster. PLoS One 2014; 9:e113899. [PMID: 25462617 PMCID: PMC4252075 DOI: 10.1371/journal.pone.0113899] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2014] [Accepted: 11/02/2014] [Indexed: 11/18/2022] Open
Abstract
While screening a large collection of wild and laboratory yeast strains for their ability to attract Drosophila melanogaster adults, we noticed a large difference in fly preference for two nearly isogenic strains of Saccharomyces cerevisiae, BY4741 and BY4742. Using standard genetic analyses, we tracked the preference difference to the lack of mitochondria in the BY4742 strain used in the initial experiment. We used gas chromatography coupled with mass spectroscopy to examine the volatile compounds produced by BY4741 and the mitochondria-deficient BY4742, and found that they differed significantly. We observed that several ethyl esters are present at much higher levels in strains with mitochondria, even in fermentative conditions. We found that nitrogen levels in the substrate affect the production of these compounds, and that they are produced at the highest level by strains with mitochondria when fermenting natural fruit substrates. Collectively these observations demonstrate that core metabolic processes mediate the interaction between yeasts and insect vectors, and highlight the importance mitochondrial functions in yeast ecology.
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Affiliation(s)
- Kelly M. Schiabor
- Department of Molecular and Cell Biology, University of California, Berkeley, California 94720, United States of America
| | - Allison S. Quan
- Department of Molecular and Cell Biology, University of California, Berkeley, California 94720, United States of America
| | - Michael B. Eisen
- Department of Molecular and Cell Biology, University of California, Berkeley, California 94720, United States of America
- Department of Integrative Biology, University of California, Berkeley, California 94720, United States of America
- QB3 Institute, University of California, Berkeley, California 94720, United States of America
- Howard Hughes Medical Institute, University of California, Berkeley, California 94720, United States of America
- * E-mail:
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22
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Grewal JS, Nguyen C, Robles R, Cho C, Kir K, Fledderman N, Gacharna G, Wesolowski M, Klinger C, Vallejo P, Menhennett L, Nagaraj A, Ebo C, Peacy G, Davelis E, Kucher D, Giers S, Kreher SA. Complex and non-redundant signals from individual odor receptors that underlie chemotaxis behavior in Drosophila melanogaster larvae. Biol Open 2014; 3:947-57. [PMID: 25238759 PMCID: PMC4197443 DOI: 10.1242/bio.20148573] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
The rules by which odor receptors encode odors and allow behavior are still largely unexplored. Although large data sets of electrophysiological responses of receptors to odors have been generated, few hypotheses have been tested with behavioral assays. We use a data set on odor responses of Drosophila larval odor receptors coupled with chemotaxis behavioral assays to examine rules of odor coding. Using mutants of odor receptors, we have found that odor receptors with similar electrophysiological responses to odors across concentrations play non-redundant roles in odor coding at specific odor concentrations. We have also found that high affinity receptors for odors determine behavioral response thresholds, but the rules for determining peak behavioral responses are more complex. While receptor mutants typically show loss of attraction to odors, some receptor mutants result in increased attraction at specific odor concentrations. The odor receptor mutants were rescued using transgenic expression of odor receptors, validating assignment of phenotypes to the alleles. Vapor pressures alone cannot fully explain behavior in our assay. Finally, some odors that did not elicit strong electrophysiological responses are associated with behavioral phenotypes upon examination of odor receptor mutants. This result is consistent with the role of sensory neurons in lateral inhibition via local interneurons in the antennal lobe. Taken together, our results suggest a complexity of odor coding rules even in a simple olfactory sensory system.
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Affiliation(s)
- Jeewanjot S Grewal
- Department of Biological Sciences, Dominican University, 7900 West Division Street, Parmer Hall 244, River Forest, IL 60305, USA
| | - Christine Nguyen
- Department of Biological Sciences, Dominican University, 7900 West Division Street, Parmer Hall 244, River Forest, IL 60305, USA
| | - Raquel Robles
- Department of Biological Sciences, Dominican University, 7900 West Division Street, Parmer Hall 244, River Forest, IL 60305, USA
| | - Christina Cho
- Department of Biological Sciences, Dominican University, 7900 West Division Street, Parmer Hall 244, River Forest, IL 60305, USA
| | - Karolina Kir
- Department of Biological Sciences, Dominican University, 7900 West Division Street, Parmer Hall 244, River Forest, IL 60305, USA
| | - Nicole Fledderman
- Department of Biological Sciences, Dominican University, 7900 West Division Street, Parmer Hall 244, River Forest, IL 60305, USA
| | - George Gacharna
- Department of Biological Sciences, Dominican University, 7900 West Division Street, Parmer Hall 244, River Forest, IL 60305, USA
| | - Michael Wesolowski
- Department of Biological Sciences, Dominican University, 7900 West Division Street, Parmer Hall 244, River Forest, IL 60305, USA
| | - Christie Klinger
- Department of Biological Sciences, Dominican University, 7900 West Division Street, Parmer Hall 244, River Forest, IL 60305, USA
| | - Pedro Vallejo
- Department of Biological Sciences, Dominican University, 7900 West Division Street, Parmer Hall 244, River Forest, IL 60305, USA
| | - Lorien Menhennett
- Department of Biological Sciences, Dominican University, 7900 West Division Street, Parmer Hall 244, River Forest, IL 60305, USA
| | - Abhiram Nagaraj
- Department of Biological Sciences, Dominican University, 7900 West Division Street, Parmer Hall 244, River Forest, IL 60305, USA
| | - Chineze Ebo
- Department of Biological Sciences, Dominican University, 7900 West Division Street, Parmer Hall 244, River Forest, IL 60305, USA
| | - Garrett Peacy
- Department of Biological Sciences, Dominican University, 7900 West Division Street, Parmer Hall 244, River Forest, IL 60305, USA
| | - Eftihia Davelis
- Department of Biological Sciences, Dominican University, 7900 West Division Street, Parmer Hall 244, River Forest, IL 60305, USA
| | - David Kucher
- Department of Biological Sciences, Dominican University, 7900 West Division Street, Parmer Hall 244, River Forest, IL 60305, USA
| | - Sarah Giers
- Department of Biological Sciences, Dominican University, 7900 West Division Street, Parmer Hall 244, River Forest, IL 60305, USA
| | - Scott A Kreher
- Department of Biological Sciences, Dominican University, 7900 West Division Street, Parmer Hall 244, River Forest, IL 60305, USA
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Patterson MA, Lagier S, Carleton A. Odor representations in the olfactory bulb evolve after the first breath and persist as an odor afterimage. Proc Natl Acad Sci U S A 2013; 110:E3340-9. [PMID: 23918364 PMCID: PMC3761593 DOI: 10.1073/pnas.1303873110] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023] Open
Abstract
Rodents can discriminate odors in one breath, and mammalian olfaction research has thus focused on the first breath. However, sensory representations dynamically change during and after stimuli. To investigate these dynamics, we recorded spike trains from the olfactory bulb of awake, head-fixed mice and found that some mitral cells' odor representations changed following the first breath and others continued after odor cessation. Population analysis revealed that these postodor responses contained odor- and concentration-specific information--an odor afterimage. Using calcium imaging, we found that most olfactory glomerular activity was restricted to the odor presentation, implying that the afterimage is not primarily peripheral. The odor afterimage was not dependent on odorant physicochemical properties. To artificially induce aftereffects, we photostimulated mitral cells using channelrhodopsin and recorded centrally maintained persistent activity. The strength and persistence of the afterimage was dependent on the duration of both artificial and natural stimulation. In summary, we show that the odor representation evolves after the first breath and that there is a centrally maintained odor afterimage, similar to other sensory systems. These dynamics may help identify novel odorants in complex environments.
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Affiliation(s)
- Michael Andrew Patterson
- Department of Basic Neurosciences, School of Medicine, University of Geneva, CH-1211 Geneva 4, Switzerland; and
- Geneva Neuroscience Center, University of Geneva, CH-1211 Geneva 4, Switzerland
| | - Samuel Lagier
- Department of Basic Neurosciences, School of Medicine, University of Geneva, CH-1211 Geneva 4, Switzerland; and
- Geneva Neuroscience Center, University of Geneva, CH-1211 Geneva 4, Switzerland
| | - Alan Carleton
- Department of Basic Neurosciences, School of Medicine, University of Geneva, CH-1211 Geneva 4, Switzerland; and
- Geneva Neuroscience Center, University of Geneva, CH-1211 Geneva 4, Switzerland
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Intensity invariant dynamics and odor-specific latencies in olfactory receptor neuron response. J Neurosci 2013; 33:6285-97. [PMID: 23575828 DOI: 10.1523/jneurosci.0426-12.2013] [Citation(s) in RCA: 109] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Odors elicit spatiotemporal patterns of activity in the brain. Spatial patterns arise from the specificity of the interaction between odorants and odorant receptors expressed in different olfactory receptor neurons (ORNs), but the origin of temporal patterns of activity and their role in odor coding remain unclear. We investigate how physiological aspects of ORN response and physical aspects of odor stimuli give rise to diverse responses in Drosophila ORNs. We show that odor stimuli have intrinsic dynamics that depend on odor type and strongly affect ORN response. Using linear-nonlinear modeling to remove the contribution of the stimulus dynamics from the ORN dynamics, we study the physiological properties of the response to different odorants and concentrations. For several odorants and receptor types, the ORN response dynamics normalized by the peak response are independent of stimulus intensity for a large portion of the dynamic range of the neuron. Adaptation to a background odor changes the gain and dynamic range of the response but does not affect normalized response dynamics. Stimulating ORNs with various odorants reveals significant odor-dependent delays in the ORN response functions. However, these differences can be dominated by differences in stimulus dynamics. In one case the response of one ORN to two odorants is predicted solely from measurements of the odor signals. Within a large portion of their dynamic range, ORNs can capture information about stimulus dynamics independently from intensity while introducing odor-dependent delays. How insects might use odor-specific stimulus dynamics and ORN dynamics in discrimination and navigation tasks remains an open question.
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Functional diversity among sensory receptors in a Drosophila olfactory circuit. Proc Natl Acad Sci U S A 2013; 110:E2134-43. [PMID: 23690583 DOI: 10.1073/pnas.1306976110] [Citation(s) in RCA: 84] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
The ability of an animal to detect, discriminate, and respond to odors depends on the function of its olfactory receptor neurons (ORNs), which in turn depends ultimately on odorant receptors. To understand the diverse mechanisms used by an animal in olfactory coding and computation, it is essential to understand the functional diversity of its odor receptors. The larval olfactory system of Drosophila melanogaster contains 21 ORNs and a comparable number of odorant receptors whose properties have been examined in only a limited way. We systematically screened them with a panel of ∼500 odorants, yielding >10,000 receptor-odorant combinations. We identify for each of 19 receptors an odorant that excites it strongly. The responses elicited by each of these odorants are analyzed in detail. The odorants elicited little cross-activation of other receptors at the test concentration; thus, low concentrations of many of these odorants in nature may be signaled by a single ORN. The receptors differed dramatically in sensitivity to their cognate odorants. The responses showed diverse temporal dynamics, with some odorants eliciting supersustained responses. An intriguing question in the field concerns the roles of different ORNs and receptors in driving behavior. We found that the cognate odorants elicited behavioral responses that varied across a broad range. Some odorants elicited strong physiological responses but weak behavioral responses or weak physiological responses but strong behavioral responses.
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Kaissling KE. Kinetics of olfactory responses might largely depend on the odorant-receptor interaction and the odorant deactivation postulated for flux detectors. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2013; 199:879-96. [PMID: 23563709 DOI: 10.1007/s00359-013-0812-z] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2012] [Revised: 03/05/2013] [Accepted: 03/10/2013] [Indexed: 11/28/2022]
Abstract
Experimental data together with modeling of pheromone perireceptor and receptor events in moths (Bombyx mori, Antheraea polyphemus) suggest that the kinetics of olfactory receptor potentials largely depend on the association of the odorant with the neuronal receptor molecules and the deactivation of the odorant accumulated around the receptor neuron. The first process could be responsible for the reaction times (mean about 400 ms) of the nerve impulses at threshold. The second process has been postulated for flux detectors such as olfactory sensilla of moths. The odorant deactivation could involve a modification of the pheromone-binding protein (PBP) that "locks" the pheromone inside the inner binding cavity of the protein. The model combines seemingly contradictory functions of the PBP such as pheromone transport, protection of the pheromone from enzymatic degradation, pheromone deactivation, and pheromone-receptor interaction. Model calculations reveal a density of at least 6,000 receptor molecules per µm(2) of neuronal membrane. The volatile decanoyl-thio-1,1,1-trifluoropropanone specifically blocks pheromone receptor neurons, probably when bound to the PBP and by competitive binding to the receptor molecules. The shallow dose-response curve of the receptor potential and altered response properties observed with pheromone derivatives or after adaptation may indicate shortened opening of ion channels.
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Affiliation(s)
- Karl-Ernst Kaissling
- Max-Planck-Institut fuer Verhaltensphysiologie/Ornithologie, Seewiesen, 82319, Starnberg, Germany,
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Abstract
We studied complete dose-response curves for 53 odorants in the third instar larvae of Drosophila melanogaster. All odorants, except one, elicited an attraction response. Some odorants also elicited a decrease from their peak response at higher concentrations. This concentration-dependent decrease in olfactory response could be due to either desensitization or repulsion, 2 possibilities that we cannot distinguish in our current assay. We observed high variations in factors like slopes, thresholds, and peaks of responses that, in agreement with previous studies, suggest that the responses of different receptors are quite different for the similar change in concentration of various ligands. We also observed that lower attraction thresholds predicted higher peak amplitude. This suggests that if odor responses encompassed wider concentration range than can be covered by the dynamic range of a single receptor, then responses tend to be high in magnitude.
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Affiliation(s)
- Sukant Khurana
- National Center for Biological Sciences, GKVK Campus, Bangalore, Karnataka, India.
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Zhou Y, Wilson RI. Transduction in Drosophila olfactory receptor neurons is invariant to air speed. J Neurophysiol 2012; 108:2051-9. [PMID: 22815404 DOI: 10.1152/jn.01146.2011] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Abstract
In the vertebrate nose, increasing air speed tends to increase the magnitude of odor-evoked activity in olfactory receptor neurons (ORNs), given constant odor concentration and duration. It is often assumed that the same is true of insect olfactory organs, but this has not been directly tested. In this study, we examined the effect of air speed on ORN responses in Drosophila melanogaster. We constructed an odor delivery device that allowed us to independently vary concentration and air speed, and we used a fast photoionization detector to precisely measure the actual odor concentration at the antenna while simultaneously recording spikes from ORNs in vivo. Our results demonstrate that Drosophila ORN odor responses are invariant to air speed, as long as odor concentration is kept constant. This finding was true across a >100-fold range of air speeds. Because odor hydrophobicity has been proposed to affect the air speed dependence of olfactory transduction, we tested a >1,000-fold range of hydrophobicity values and found that ORN responses are invariant to air speed across this full range. These results have implications for the mechanisms of odor delivery to Drosophila ORNs. Our findings are also significant because flies have a limited ability to control air flow across their antennae, unlike terrestrial vertebrates, which can control air flow within their nasal cavity. Thus, for the fly, invariance to air speed may be adaptive because it confers robustness to changing wind conditions.
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Affiliation(s)
- Yi Zhou
- Department of Neurobiology, Harvard Medical School, Boston, Massachusetts 02115, USA
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