• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (4633588)   Today's Articles (19)   Subscriber (49968)
For: Coban O, Lamb DC, Zaychikov E, Heumann H, Nienhaus GU. Conformational heterogeneity in RNA polymerase observed by single-pair FRET microscopy. Biophys J 2006;90:4605-17. [PMID: 16581837 PMCID: PMC1471840 DOI: 10.1529/biophysj.105.078840] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2005] [Accepted: 03/08/2006] [Indexed: 11/18/2022]  Open
Number Cited by Other Article(s)
1
Hare PJ, LaGree TJ, Byrd BA, DeMarco AM, Mok WWK. Single-Cell Technologies to Study Phenotypic Heterogeneity and Bacterial Persisters. Microorganisms 2021;9:2277. [PMID: 34835403 PMCID: PMC8620850 DOI: 10.3390/microorganisms9112277] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Revised: 10/20/2021] [Accepted: 10/27/2021] [Indexed: 11/16/2022]  Open
2
Manz C, Kobitski AY, Samanta A, Jäschke A, Nienhaus GU. The multi-state energy landscape of the SAM-I riboswitch: A single-molecule Förster resonance energy transfer spectroscopy study. J Chem Phys 2018;148:123324. [DOI: 10.1063/1.5003783] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
3
Turtola M, Belogurov GA. NusG inhibits RNA polymerase backtracking by stabilizing the minimal transcription bubble. eLife 2016;5. [PMID: 27697152 PMCID: PMC5100998 DOI: 10.7554/elife.18096] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2016] [Accepted: 10/03/2016] [Indexed: 12/25/2022]  Open
4
Liu J, Hanne J, Britton BM, Shoffner M, Albers AE, Bennett J, Zatezalo R, Barfield R, Rabuka D, Lee JB, Fishel R. An Efficient Site-Specific Method for Irreversible Covalent Labeling of Proteins with a Fluorophore. Sci Rep 2015;5:16883. [PMID: 26582263 PMCID: PMC4652282 DOI: 10.1038/srep16883] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2015] [Accepted: 09/07/2015] [Indexed: 11/09/2022]  Open
5
Søndergaard S, Aznauryan M, Haustrup EK, Schiøtt B, Birkedal V, Corry B. Dynamics of fluorescent dyes attached to G-quadruplex DNA and their effect on FRET experiments. Chemphyschem 2015;16:2562-70. [PMID: 26174803 DOI: 10.1002/cphc.201500271] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2015] [Revised: 06/05/2015] [Indexed: 11/08/2022]
6
Coban O, Zanetti-Dominguez LC, Matthews DR, Rolfe DJ, Weitsman G, Barber PR, Barbeau J, Devauges V, Kampmeier F, Winn M, Vojnovic B, Parker PJ, Lidke KA, Lidke DS, Ameer-Beg SM, Martin-Fernandez ML, Ng T. Effect of phosphorylation on EGFR dimer stability probed by single-molecule dynamics and FRET/FLIM. Biophys J 2015;108:1013-26. [PMID: 25762314 PMCID: PMC4375452 DOI: 10.1016/j.bpj.2015.01.005] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2014] [Revised: 12/06/2014] [Accepted: 01/07/2015] [Indexed: 12/22/2022]  Open
7
Doetsch M, Stampfl S, Fürtig B, Beich-Frandsen M, Saxena K, Lybecker M, Schroeder R. Study of E. coli Hfq's RNA annealing acceleration and duplex destabilization activities using substrates with different GC-contents. Nucleic Acids Res 2012;41:487-97. [PMID: 23104381 PMCID: PMC3592463 DOI: 10.1093/nar/gks942] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
8
Cho WK, Jeong C, Kim D, Chang M, Song KM, Hanne J, Ban C, Fishel R, Lee JB. ATP alters the diffusion mechanics of MutS on mismatched DNA. Structure 2012;20:1264-1274. [PMID: 22682745 DOI: 10.1016/j.str.2012.04.017] [Citation(s) in RCA: 75] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2012] [Revised: 04/20/2012] [Accepted: 04/23/2012] [Indexed: 11/18/2022]
9
KOBITSKI ANDREIYU, NIERTH ALEXANDER, HENGESBACH MARTIN, JÄSCHKE ANDRES, HELM MARK, NIENHAUS GULRICH. EXPLORING THE FOLDING FREE ENERGY LANDSCAPE OF SMALL RNA MOLECULES BY SINGLE-PAIR FÖRSTER RESONANCE ENERGY TRANSFER. ACTA ACUST UNITED AC 2011. [DOI: 10.1142/s1793048008000873] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
10
Torella JP, Holden SJ, Santoso Y, Hohlbein J, Kapanidis AN. Identifying molecular dynamics in single-molecule FRET experiments with burst variance analysis. Biophys J 2011;100:1568-77. [PMID: 21402040 DOI: 10.1016/j.bpj.2011.01.066] [Citation(s) in RCA: 83] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2010] [Revised: 12/31/2010] [Accepted: 01/20/2011] [Indexed: 12/22/2022]  Open
11
Gopich IV, Szabo A. FRET efficiency distributions of multistate single molecules. J Phys Chem B 2010;114:15221-6. [PMID: 21028764 DOI: 10.1021/jp105359z] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
12
Santoso Y, Torella JP, Kapanidis AN. Characterizing Single-Molecule FRET Dynamics with Probability Distribution Analysis. Chemphyschem 2010;11:2209-19. [DOI: 10.1002/cphc.201000129] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
13
Zhang H, Shu D, Browne M, Guo P. Construction of a laser combiner for dual fluorescent single molecule imaging of pRNA of phi29 DNA packaging motor. Biomed Microdevices 2010;12:97-106. [PMID: 19809878 PMCID: PMC2812712 DOI: 10.1007/s10544-009-9364-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
14
Hengesbach M, Voigts-Hoffmann F, Hofmann B, Helm M. Formation of a stalled early intermediate of pseudouridine synthesis monitored by real-time FRET. RNA (NEW YORK, N.Y.) 2010;16:610-620. [PMID: 20106954 PMCID: PMC2822925 DOI: 10.1261/rna.1832510] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2009] [Accepted: 12/03/2009] [Indexed: 05/28/2023]
15
Feig M, Burton ZF. RNA polymerase II flexibility during translocation from normal mode analysis. Proteins 2010;78:434-46. [PMID: 19714773 DOI: 10.1002/prot.22560] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
16
Zhang H, Shu D, Wang W, Guo P. Design and application of single fluorophore dual-view imaging system containing both the objective- and prism-type TIRF. PROCEEDINGS OF SPIE--THE INTERNATIONAL SOCIETY FOR OPTICAL ENGINEERING 2010;7571:757107-757108. [PMID: 20436791 DOI: 10.1117/12.847457] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
17
Grünberg S, Reich C, Zeller ME, Bartlett MS, Thomm M. Rearrangement of the RNA polymerase subunit H and the lower jaw in archaeal elongation complexes. Nucleic Acids Res 2009;38:1950-63. [PMID: 20040576 PMCID: PMC2847245 DOI: 10.1093/nar/gkp1190] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]  Open
18
Blanchard SC. Single-molecule observations of ribosome function. Curr Opin Struct Biol 2009;19:103-9. [PMID: 19223173 DOI: 10.1016/j.sbi.2009.01.002] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2008] [Revised: 01/12/2009] [Accepted: 01/12/2009] [Indexed: 10/21/2022]
19
Nienhaus GU. Single-molecule fluorescence studies of protein folding. Methods Mol Biol 2009;490:311-337. [PMID: 19157089 DOI: 10.1007/978-1-59745-367-7_13] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
20
Probing complexes with single fluorophores: factors contributing to dispersion of FRET in DNA/RNA duplexes. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2008;38:395-405. [DOI: 10.1007/s00249-008-0383-z] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2008] [Revised: 10/23/2008] [Accepted: 10/23/2008] [Indexed: 10/21/2022]
21
Hengesbach M, Kobitski A, Voigts-Hoffmann F, Frauer C, Nienhaus GU, Helm M. RNA intramolecular dynamics by single-molecule FRET. ACTA ACUST UNITED AC 2008;Chapter 11:Unit 11.12. [PMID: 18819081 DOI: 10.1002/0471142700.nc1112s34] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
22
Herbert KM, Greenleaf WJ, Block SM. Single-molecule studies of RNA polymerase: motoring along. Annu Rev Biochem 2008;77:149-76. [PMID: 18410247 DOI: 10.1146/annurev.biochem.77.073106.100741] [Citation(s) in RCA: 143] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
23
Munro JB, Vaiana A, Sanbonmatsu KY, Blanchard SC. A new view of protein synthesis: mapping the free energy landscape of the ribosome using single-molecule FRET. Biopolymers 2008;89:565-77. [PMID: 18286627 DOI: 10.1002/bip.20961] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
24
Kobitski A, Hengesbach M, Helm M, Nienhaus G. Sculpting an RNA Conformational Energy Landscape by a Methyl Group Modification—A Single-Molecule FRET Study. Angew Chem Int Ed Engl 2008;47:4326-30. [DOI: 10.1002/anie.200705675] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
25
Kobitski A, Hengesbach M, Helm M, Nienhaus G. Ausformung einer RNA-Konformationsenergielandschaft durch eine Methylgruppenmodifikation – eine Einzelmolekül-FRET-Studie. Angew Chem Int Ed Engl 2008. [DOI: 10.1002/ange.200705675] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
26
Sharma S, Chakraborty K, Müller BK, Astola N, Tang YC, Lamb DC, Hayer-Hartl M, Hartl FU. Monitoring Protein Conformation along the Pathway of Chaperonin-Assisted Folding. Cell 2008;133:142-53. [DOI: 10.1016/j.cell.2008.01.048] [Citation(s) in RCA: 114] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2007] [Revised: 12/07/2007] [Accepted: 01/28/2008] [Indexed: 10/22/2022]
27
Single-molecule tracking of mRNA exiting from RNA polymerase II. Proc Natl Acad Sci U S A 2007;105:135-40. [PMID: 18162559 DOI: 10.1073/pnas.0703815105] [Citation(s) in RCA: 91] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
28
NC2 mobilizes TBP on core promoter TATA boxes. Nat Struct Mol Biol 2007;14:1196-201. [PMID: 17994103 DOI: 10.1038/nsmb1328] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2007] [Accepted: 10/02/2007] [Indexed: 11/08/2022]
29
Voigts-Hoffmann F, Hengesbach M, Kobitski AY, van Aerschot A, Herdewijn P, Nienhaus GU, Helm M. A Methyl Group Controls Conformational Equilibrium in Human Mitochondrial tRNALys. J Am Chem Soc 2007;129:13382-3. [DOI: 10.1021/ja075520+] [Citation(s) in RCA: 68] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
30
Kobitski AY, Nierth A, Helm M, Jäschke A, Nienhaus GU. Mg2+-dependent folding of a Diels-Alderase ribozyme probed by single-molecule FRET analysis. Nucleic Acids Res 2007;35:2047-59. [PMID: 17344321 PMCID: PMC1874616 DOI: 10.1093/nar/gkm072] [Citation(s) in RCA: 73] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
31
Nienhaus GU. Exploring protein structure and dynamics under denaturing conditions by single-molecule FRET analysis. Macromol Biosci 2007;6:907-22. [PMID: 17099864 DOI: 10.1002/mabi.200600158] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
32
Heyes CD, Groll J, Möller M, Nienhaus GU. Synthesis, patterning and applications of star-shaped poly(ethylene glycol) biofunctionalized surfaces. ACTA ACUST UNITED AC 2007;3:419-30. [PMID: 17533455 DOI: 10.1039/b700055n] [Citation(s) in RCA: 76] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
33
Engel J. Visions for novel biophysical elucidations of extracellular matrix networks. Int J Biochem Cell Biol 2007;39:311-8. [PMID: 16973404 DOI: 10.1016/j.biocel.2006.08.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2006] [Revised: 08/03/2006] [Accepted: 08/04/2006] [Indexed: 11/16/2022]
PrevPage 1 of 1 1Next
© 2004-2024 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA