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For: Calus MP, Meuwissen TH, de Roos AP, Veerkamp RF. Accuracy of genomic selection using different methods to define haplotypes. Genetics 2008;178:553-61. [PMID: 18202394 DOI: 10.1534/genetics.107.080838] [Citation(s) in RCA: 270] [Impact Index Per Article: 16.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
Number Cited by Other Article(s)
1
Chegini A, Strandén I, Karaman E, Iso-Touru T, Pösö J, Aamand GP, Lidauer MH. Marker weighting improves single-step genomic prediction reliabilities of udder health traits in Nordic Red and Jersey dairy cattle populations. J Dairy Sci 2024:S0022-0302(24)01196-2. [PMID: 39369893 DOI: 10.3168/jds.2024-25374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2024] [Accepted: 09/04/2024] [Indexed: 10/08/2024]
2
Villar-Hernández BDJ, Pérez-Rodríguez P, Vitale P, Gerard G, Montesinos-Lopez OA, Saint Pierre C, Crossa J, Dreisigacker S. Optimizing Genomic Parental Selection for Categorical and Continuous-Categorical Multi-Trait Mixtures. Genes (Basel) 2024;15:995. [PMID: 39202356 PMCID: PMC11353433 DOI: 10.3390/genes15080995] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2024] [Revised: 07/20/2024] [Accepted: 07/25/2024] [Indexed: 09/03/2024]  Open
3
Sarakul M, Elzo MA, Koonawootrittriron S, Suwanasopee T, Jattawa D, Laodim T. A comparison of five sets of overlapping and non-overlapping sliding windows for semen production traits in the Thai multibreed dairy population. Anim Biosci 2024;37:428-436. [PMID: 37946424 PMCID: PMC10915195 DOI: 10.5713/ab.23.0230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Revised: 09/03/2023] [Accepted: 10/02/2023] [Indexed: 11/12/2023]  Open
4
Misztal I, Lourenco D. Potential negative effects of genomic selection. J Anim Sci 2024;102:skae155. [PMID: 38847068 PMCID: PMC11229339 DOI: 10.1093/jas/skae155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Accepted: 06/05/2024] [Indexed: 07/10/2024]  Open
5
Berry DP, Spangler ML. Animal board invited review: Practical applications of genomic information in livestock. Animal 2023;17:100996. [PMID: 37820404 DOI: 10.1016/j.animal.2023.100996] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 09/08/2023] [Accepted: 09/11/2023] [Indexed: 10/13/2023]  Open
6
Sinha D, Maurya AK, Abdi G, Majeed M, Agarwal R, Mukherjee R, Ganguly S, Aziz R, Bhatia M, Majgaonkar A, Seal S, Das M, Banerjee S, Chowdhury S, Adeyemi SB, Chen JT. Integrated Genomic Selection for Accelerating Breeding Programs of Climate-Smart Cereals. Genes (Basel) 2023;14:1484. [PMID: 37510388 PMCID: PMC10380062 DOI: 10.3390/genes14071484] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 07/14/2023] [Accepted: 07/18/2023] [Indexed: 07/30/2023]  Open
7
Vahedi SM, Salek Ardetani S, Brito LF, Karimi K, Pahlavan Afshari K, Banabazi MH. Expanding the application of haplotype-based genomic predictions to the wild: A case of antibody response against Teladorsagia circumcincta in Soay sheep. BMC Genomics 2023;24:335. [PMID: 37330501 PMCID: PMC10276919 DOI: 10.1186/s12864-023-09407-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Accepted: 05/24/2023] [Indexed: 06/19/2023]  Open
8
Alemu A, Batista L, Singh PK, Ceplitis A, Chawade A. Haplotype-tagged SNPs improve genomic prediction accuracy for Fusarium head blight resistance and yield-related traits in wheat. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2023;136:92. [PMID: 37009920 PMCID: PMC10068637 DOI: 10.1007/s00122-023-04352-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Accepted: 03/21/2023] [Indexed: 06/19/2023]
9
Dash S, Singh A, Dixit SP, Kumar A, Behera R. Exploring haplotype block structure, runs of homozygosity, and effective population size among dairy cattle breeds of India. Trop Anim Health Prod 2023;55:129. [PMID: 36952060 DOI: 10.1007/s11250-023-03534-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2022] [Accepted: 03/06/2023] [Indexed: 03/24/2023]
10
Exploring the statistical nature of independent chromosome segments. Livest Sci 2023. [DOI: 10.1016/j.livsci.2023.105207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/13/2023]
11
Araujo AC, Carneiro PLS, Oliveira HR, Lewis RM, Brito LF. SNP- and haplotype-based single-step genomic predictions for body weight, wool, and reproductive traits in North American Rambouillet sheep. J Anim Breed Genet 2023;140:216-234. [PMID: 36408677 PMCID: PMC10099590 DOI: 10.1111/jbg.12748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2022] [Accepted: 10/23/2022] [Indexed: 11/22/2022]
12
Angarita Barajas BK, Cantet RJC, Steibel JP, Schrauf MF, Forneris NS. Heritability estimates and predictive ability for pig meat quality traits using identity-by-state and identity-by-descent relationships in an F2 population. J Anim Breed Genet 2023;140:13-27. [PMID: 36300585 DOI: 10.1111/jbg.12742] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Accepted: 10/05/2022] [Indexed: 12/13/2022]
13
Li H, Wang Z, Xu L, Li Q, Gao H, Ma H, Cai W, Chen Y, Gao X, Zhang L, Gao H, Zhu B, Xu L, Li J. Genomic prediction of carcass traits using different haplotype block partitioning methods in beef cattle. Evol Appl 2022;15:2028-2042. [PMID: 36540636 PMCID: PMC9753827 DOI: 10.1111/eva.13491] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2022] [Accepted: 09/18/2022] [Indexed: 09/22/2023]  Open
14
Narayana SG, de Jong E, Schenkel FS, Fonseca PA, Chud TC, Powel D, Wachoski-Dark G, Ronksley PE, Miglior F, Orsel K, Barkema HW. Underlying genetic architecture of resistance to mastitis in dairy cattle: A systematic review and gene prioritization analysis of genome-wide association studies. J Dairy Sci 2022;106:323-351. [DOI: 10.3168/jds.2022-21923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2022] [Accepted: 08/01/2022] [Indexed: 11/05/2022]
15
Ye H, Zhang Z, Ren D, Cai X, Zhu Q, Ding X, Zhang H, Zhang Z, Li J. Genomic Prediction Using LD-Based Haplotypes in Combined Pig Populations. Front Genet 2022;13:843300. [PMID: 35754827 PMCID: PMC9218795 DOI: 10.3389/fgene.2022.843300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2021] [Accepted: 05/02/2022] [Indexed: 11/13/2022]  Open
16
Seyum EG, Bille NH, Abtew WG, Rastas P, Arifianto D, Domonhédo H, Cochard B, Jacob F, Riou V, Pomiès V, Lopez D, Bell JM, Cros D. Genome properties of key oil palm (Elaeis guineensis Jacq.) breeding populations. J Appl Genet 2022;63:633-650. [PMID: 35691996 DOI: 10.1007/s13353-022-00708-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Revised: 05/26/2022] [Accepted: 06/04/2022] [Indexed: 11/29/2022]
17
Yan X, Zhang T, Liu L, Yu Y, Yang G, Han Y, Gong G, Wang F, Zhang L, Liu H, Li W, Yan X, Mao H, Li Y, Du C, Li J, Zhang Y, Wang R, Lv Q, Wang Z, Zhang J, Liu Z, Wang Z, Su R. Accuracy of Genomic Selection for Important Economic Traits of Cashmere and Meat Goats Assessed by Simulation Study. Front Vet Sci 2022;9:770539. [PMID: 35372544 PMCID: PMC8966406 DOI: 10.3389/fvets.2022.770539] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2021] [Accepted: 01/24/2022] [Indexed: 11/13/2022]  Open
18
Wientjes YCJ, Bijma P, Calus MPL, Zwaan BJ, Vitezica ZG, van den Heuvel J. The long-term effects of genomic selection: 1. Response to selection, additive genetic variance, and genetic architecture. Genet Sel Evol 2022;54:19. [PMID: 35255802 PMCID: PMC8900405 DOI: 10.1186/s12711-022-00709-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Accepted: 02/10/2022] [Indexed: 11/10/2022]  Open
19
Zhao J, Sauvage C, Bitton F, Causse M. Multiple haplotype-based analyses provide genetic and evolutionary insights into tomato fruit weight and composition. HORTICULTURE RESEARCH 2022;9:uhab009. [PMID: 35039843 PMCID: PMC8771453 DOI: 10.1093/hr/uhab009] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Revised: 10/12/2021] [Accepted: 10/15/2021] [Indexed: 05/05/2023]
20
Zhang M, Luo H, Xu L, Shi Y, Zhou J, Wang D, Zhang X, Huang X, Wang Y. Genomic Selection for Milk Production Traits in Xinjiang Brown Cattle. Animals (Basel) 2022;12:ani12020136. [PMID: 35049759 PMCID: PMC8772551 DOI: 10.3390/ani12020136] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Revised: 12/22/2021] [Accepted: 12/30/2021] [Indexed: 11/16/2022]  Open
21
Araujo AC, Carneiro PLS, Alvarenga AB, Oliveira HR, Miller SP, Retallick K, Brito LF. Haplotype-Based Single-Step GWAS for Yearling Temperament in American Angus Cattle. Genes (Basel) 2021;13:17. [PMID: 35052358 PMCID: PMC8775055 DOI: 10.3390/genes13010017] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 12/14/2021] [Accepted: 12/18/2021] [Indexed: 01/23/2023]  Open
22
Araujo AC, Carneiro PLS, Oliveira HR, Schenkel FS, Veroneze R, Lourenco DAL, Brito LF. A Comprehensive Comparison of Haplotype-Based Single-Step Genomic Predictions in Livestock Populations With Different Genetic Diversity Levels: A Simulation Study. Front Genet 2021;12:729867. [PMID: 34721524 PMCID: PMC8551834 DOI: 10.3389/fgene.2021.729867] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2021] [Accepted: 09/07/2021] [Indexed: 11/13/2022]  Open
23
Yang R, Xu Z, Wang Q, Zhu D, Bian C, Ren J, Huang Z, Zhu X, Tian Z, Wang Y, Jiang Z, Zhao Y, Zhang D, Li N, Hu X. Genome‑wide association study and genomic prediction for growth traits in yellow-plumage chicken using genotyping-by-sequencing. Genet Sel Evol 2021;53:82. [PMID: 34706641 PMCID: PMC8555081 DOI: 10.1186/s12711-021-00672-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Accepted: 09/08/2021] [Indexed: 12/25/2022]  Open
24
Zhu S, Guo T, Yuan C, Liu J, Li J, Han M, Zhao H, Wu Y, Sun W, Wang X, Wang T, Liu J, Tiambo CK, Yue Y, Yang B. Evaluation of Bayesian alphabet and GBLUP based on different marker density for genomic prediction in Alpine Merino sheep. G3 (BETHESDA, MD.) 2021;11:6310012. [PMID: 34849779 PMCID: PMC8527494 DOI: 10.1093/g3journal/jkab206] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Accepted: 06/01/2021] [Indexed: 01/20/2023]
25
Bian C, Prakapenka D, Tan C, Yang R, Zhu D, Guo X, Liu D, Cai G, Li Y, Liang Z, Wu Z, Da Y, Hu X. Haplotype genomic prediction of phenotypic values based on chromosome distance and gene boundaries using low-coverage sequencing in Duroc pigs. Genet Sel Evol 2021;53:78. [PMID: 34620094 PMCID: PMC8496108 DOI: 10.1186/s12711-021-00661-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2021] [Accepted: 08/20/2021] [Indexed: 11/22/2022]  Open
26
Ahmar S, Ballesta P, Ali M, Mora-Poblete F. Achievements and Challenges of Genomics-Assisted Breeding in Forest Trees: From Marker-Assisted Selection to Genome Editing. Int J Mol Sci 2021;22:10583. [PMID: 34638922 PMCID: PMC8508745 DOI: 10.3390/ijms221910583] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Revised: 09/26/2021] [Accepted: 09/27/2021] [Indexed: 12/23/2022]  Open
27
Li H, Zhu B, Xu L, Wang Z, Xu L, Zhou P, Gao H, Guo P, Chen Y, Gao X, Zhang L, Gao H, Cai W, Xu L, Li J. Genomic Prediction Using LD-Based Haplotypes Inferred From High-Density Chip and Imputed Sequence Variants in Chinese Simmental Beef Cattle. Front Genet 2021;12:665382. [PMID: 34394182 PMCID: PMC8358323 DOI: 10.3389/fgene.2021.665382] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Accepted: 06/30/2021] [Indexed: 01/05/2023]  Open
28
Dos Santos A, Rodrigues EV, Laviola BG, Teodoro LPR, Teodoro PE, Bhering LL. Increasing selection gain and accuracy of harvest prediction models in Jatropha through genome-wide selection. Sci Rep 2021;11:13583. [PMID: 34193953 PMCID: PMC8245479 DOI: 10.1038/s41598-021-93022-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Accepted: 06/17/2021] [Indexed: 11/09/2022]  Open
29
Validation of the Prediction Accuracy for 13 Traits in Chinese Simmental Beef Cattle Using a Preselected Low-Density SNP Panel. Animals (Basel) 2021;11:ani11071890. [PMID: 34202066 PMCID: PMC8300368 DOI: 10.3390/ani11071890] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2021] [Revised: 06/08/2021] [Accepted: 06/15/2021] [Indexed: 11/17/2022]  Open
30
O'Connor KM, Hayes BJ, Hardner CM, Alam M, Henry RJ, Topp BL. Genomic selection and genetic gain for nut yield in an Australian macadamia breeding population. BMC Genomics 2021;22:370. [PMID: 34016055 PMCID: PMC8139092 DOI: 10.1186/s12864-021-07694-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Accepted: 05/10/2021] [Indexed: 02/06/2023]  Open
31
Schmidtmann C, Schönherz A, Guldbrandtsen B, Marjanovic J, Calus M, Hinrichs D, Thaller G. Assessing the genetic background and genomic relatedness of red cattle populations originating from Northern Europe. Genet Sel Evol 2021;53:23. [PMID: 33676402 PMCID: PMC7936461 DOI: 10.1186/s12711-021-00613-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2020] [Accepted: 02/08/2021] [Indexed: 12/20/2022]  Open
32
Minamikawa MF, Kunihisa M, Noshita K, Moriya S, Abe K, Hayashi T, Katayose Y, Matsumoto T, Nishitani C, Terakami S, Yamamoto T, Iwata H. Tracing founder haplotypes of Japanese apple varieties: application in genomic prediction and genome-wide association study. HORTICULTURE RESEARCH 2021;8:49. [PMID: 33642580 PMCID: PMC7917097 DOI: 10.1038/s41438-021-00485-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Revised: 12/28/2020] [Accepted: 01/03/2021] [Indexed: 05/21/2023]
33
Osorio LF, Gezan SA, Verma S, Whitaker VM. Independent Validation of Genomic Prediction in Strawberry Over Multiple Cycles. Front Genet 2021;11:596258. [PMID: 33552121 PMCID: PMC7862747 DOI: 10.3389/fgene.2020.596258] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2020] [Accepted: 12/31/2020] [Indexed: 01/05/2023]  Open
34
Genome wide association study and genomic prediction for stover quality traits in tropical maize (Zea mays L.). Sci Rep 2021;11:686. [PMID: 33436870 PMCID: PMC7804097 DOI: 10.1038/s41598-020-80118-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2018] [Accepted: 12/15/2020] [Indexed: 11/09/2022]  Open
35
Adoption and Optimization of Genomic Selection To Sustain Breeding for Apricot Fruit Quality. G3-GENES GENOMES GENETICS 2020;10:4513-4529. [PMID: 33067307 PMCID: PMC7718743 DOI: 10.1534/g3.120.401452] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
36
Liang Z, Tan C, Prakapenka D, Ma L, Da Y. Haplotype Analysis of Genomic Prediction Using Structural and Functional Genomic Information for Seven Human Phenotypes. Front Genet 2020;11:588907. [PMID: 33324447 PMCID: PMC7726221 DOI: 10.3389/fgene.2020.588907] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Accepted: 10/28/2020] [Indexed: 11/19/2022]  Open
37
Comparison of long-term effects of genomic selection index and genomic selection using different Bayesian methods. Livest Sci 2020. [DOI: 10.1016/j.livsci.2020.104207] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
38
Kim KD, Kang Y, Kim C. Application of Genomic Big Data in Plant Breeding:Past, Present, and Future. PLANTS (BASEL, SWITZERLAND) 2020;9:E1454. [PMID: 33126607 PMCID: PMC7694055 DOI: 10.3390/plants9111454] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Revised: 10/26/2020] [Accepted: 10/26/2020] [Indexed: 01/11/2023]
39
Teissier M, Larroque H, Brito LF, Rupp R, Schenkel FS, Robert-Granié C. Genomic predictions based on haplotypes fitted as pseudo-SNP for milk production and udder type traits and SCS in French dairy goats. J Dairy Sci 2020;103:11559-11573. [PMID: 33041034 DOI: 10.3168/jds.2020-18662] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2020] [Accepted: 07/27/2020] [Indexed: 12/18/2022]
40
Akbarpour T, Ghavi Hossein-Zadeh N, Shadparvar AA. Marker genotyping error effects on genomic predictions under different genetic architectures. Mol Genet Genomics 2020;296:79-89. [PMID: 32995954 DOI: 10.1007/s00438-020-01728-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Accepted: 09/19/2020] [Indexed: 11/26/2022]
41
Oyelami FO, Zhao Q, Xu Z, Zhang Z, Sun H, Zhang Z, Ma P, Wang Q, Pan Y. Haplotype Block Analysis Reveals Candidate Genes and QTLs for Meat Quality and Disease Resistance in Chinese Jiangquhai Pig Breed. Front Genet 2020;11:752. [PMID: 33101353 PMCID: PMC7498712 DOI: 10.3389/fgene.2020.00752] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2019] [Accepted: 06/23/2020] [Indexed: 11/19/2022]  Open
42
Sallam AH, Conley E, Prakapenka D, Da Y, Anderson JA. Improving Prediction Accuracy Using Multi-allelic Haplotype Prediction and Training Population Optimization in Wheat. G3 (BETHESDA, MD.) 2020;10:2265-2273. [PMID: 32371453 PMCID: PMC7341132 DOI: 10.1534/g3.120.401165] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/18/2020] [Accepted: 04/29/2020] [Indexed: 02/01/2023]
43
Xu L, Gao N, Wang Z, Xu L, Liu Y, Chen Y, Xu L, Gao X, Zhang L, Gao H, Zhu B, Li J. Incorporating Genome Annotation Into Genomic Prediction for Carcass Traits in Chinese Simmental Beef Cattle. Front Genet 2020;11:481. [PMID: 32499816 PMCID: PMC7243208 DOI: 10.3389/fgene.2020.00481] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2019] [Accepted: 04/17/2020] [Indexed: 01/08/2023]  Open
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Haplotype-Based Genome-Wide Association Study and Identification of Candidate Genes Associated with Carcass Traits in Hanwoo Cattle. Genes (Basel) 2020;11:genes11050551. [PMID: 32423003 PMCID: PMC7290854 DOI: 10.3390/genes11050551] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2020] [Revised: 04/30/2020] [Accepted: 05/05/2020] [Indexed: 12/20/2022]  Open
45
VanRaden PM. Symposium review: How to implement genomic selection. J Dairy Sci 2020;103:5291-5301. [PMID: 32331884 DOI: 10.3168/jds.2019-17684] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Accepted: 01/03/2020] [Indexed: 12/16/2022]
46
Prakapenka D, Wang C, Liang Z, Bian C, Tan C, Da Y. GVCHAP: A Computing Pipeline for Genomic Prediction and Variance Component Estimation Using Haplotypes and SNP Markers. Front Genet 2020;11:282. [PMID: 32318093 PMCID: PMC7154123 DOI: 10.3389/fgene.2020.00282] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2019] [Accepted: 03/09/2020] [Indexed: 01/05/2023]  Open
47
Won S, Park JE, Son JH, Lee SH, Park BH, Park M, Park WC, Chai HH, Kim H, Lee J, Lim D. Genomic Prediction Accuracy Using Haplotypes Defined by Size and Hierarchical Clustering Based on Linkage Disequilibrium. Front Genet 2020;11:134. [PMID: 32211021 PMCID: PMC7067973 DOI: 10.3389/fgene.2020.00134] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Accepted: 02/04/2020] [Indexed: 11/13/2022]  Open
48
Baseggio M, Murray M, Magallanes-Lundback M, Kaczmar N, Chamness J, Buckler ES, Smith ME, DellaPenna D, Tracy WF, Gore MA. Natural variation for carotenoids in fresh kernels is controlled by uncommon variants in sweet corn. THE PLANT GENOME 2020;13:e20008. [PMID: 33016632 DOI: 10.1002/tpg2.20008] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2019] [Accepted: 10/30/2019] [Indexed: 06/11/2023]
49
Feitosa FLB, Pereira ASC, Amorim ST, Peripolli E, Silva RMDO, Braz CU, Ferrinho AM, Schenkel FS, Brito LF, Espigolan R, de Albuquerque LG, Baldi F. Comparison between haplotype-based and individual snp-based genomic predictions for beef fatty acid profile in Nelore cattle. J Anim Breed Genet 2019;137:468-476. [PMID: 31867831 DOI: 10.1111/jbg.12463] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2019] [Revised: 11/18/2019] [Accepted: 11/24/2019] [Indexed: 11/28/2022]
50
Theoretical Evaluation of Multi-Breed Genomic Prediction in Chinese Indigenous Cattle. Animals (Basel) 2019;9:ani9100789. [PMID: 31614691 PMCID: PMC6827096 DOI: 10.3390/ani9100789] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Revised: 09/24/2019] [Accepted: 10/02/2019] [Indexed: 12/19/2022]  Open
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