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Joshi U, Pandya M, Gupta S, George LB, Highland H. Extracellular Proteomic Profiling from the Erythrocytes Infected with Plasmodium Falciparum 3D7 Holds Promise for the Detection of Biomarkers. Protein J 2024; 43:819-833. [PMID: 39009910 DOI: 10.1007/s10930-024-10212-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/01/2024] [Indexed: 07/17/2024]
Abstract
Plasmodium falciparum (P. falciparum), which causes the most severe form of malaria, if left untreated, has 24 h window in which it can cause severe illness and even death. The aim of this study was to create the most comprehensive and informative secretory-proteome possible by combining high-accuracy and high-sensitivity protein identification technology. In this study, we used Plasmodium falciparum 3D7 (Pf3D7) as the model parasite to develop a label-free quantification proteomic strategy with the main goal of identifying Pf3D7 proteins that are supposed to be secreted outside the infected erythrocytes in the spent media culture during the in-vitro study. The spent culture media supernatant was subjected to differential and ultra-centrifugation steps followed by total protein extraction, estimation, and in-solution digestion using trypsin, digested peptides were analyzed using Nano-LC coupled with ESI for MS/MS. MS/MS spectra were processed using Maxquant software (v2.1.4.0.). Non-infected erythrocytes incubated spent cultured media supernatant were considered as control. Out of discovered 38 proteins, proteins belonging to P. falciparum spp. were EGF-like protein (C0H544), Endoplasmic reticulum chaperone GRP170 (C0H5H0), Small GTP-binding protein sar1 (Q8I1S0), Erythrocyte membrane protein 1, PfEMP1 (Q8I639), aldehyde reductase (Q8ID61), Conserved Plasmodium proteins (Q8IEH3, Q8ILD1), Antigen 332, DBL-like protein (Q8IHN4), Fe-S cluster assembly protein (Q8II78), identified and chosen for further in-depth investigation. This study highlights the value of secretory Plasmodium proteins play crucial roles in various aspects of the disease progression and host-pathogen interactions which can serve as diagnostic markers for malaria infection.
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Affiliation(s)
- Urja Joshi
- Department of Biochemistry, School of Sciences, Gujarat University, Ahmedabad, Gujarat, India.
- Department of Zoology, BMTC, Human Genetics and WLC, School of Sciences, Gujarat University, Ahmedabad, Gujarat, India.
| | - Maulik Pandya
- Department of Botany, Bioinformatics and Climate change, School of Sciences, Gujarat University, Ahmedabad, Gujarat, India
| | - Sharad Gupta
- Biological Engineering, IIT Gandhinagar, Palaj, Gujarat, India
| | - Linz-Buoy George
- Department of Zoology, BMTC, Human Genetics and WLC, School of Sciences, Gujarat University, Ahmedabad, Gujarat, India
| | - Hyacinth Highland
- Department of Zoology, BMTC, Human Genetics and WLC, School of Sciences, Gujarat University, Ahmedabad, Gujarat, India
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Cosenza LC, Marzaro G, Zurlo M, Gasparello J, Zuccato C, Finotti A, Gambari R. Inhibitory effects of SARS-CoV-2 spike protein and BNT162b2 vaccine on erythropoietin-induced globin gene expression in erythroid precursor cells from patients with β-thalassemia. Exp Hematol 2024; 129:104128. [PMID: 37939833 DOI: 10.1016/j.exphem.2023.11.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Revised: 09/18/2023] [Accepted: 11/01/2023] [Indexed: 11/10/2023]
Abstract
During the recent coronavirus disease 2019 (COVID-19) pandemic several patients with β-thalassemia have been infected by severe acute respiratory syndrome coronavirus (SARS-CoV-2), and most patients were vaccinated against SARS-CoV-2. Recent studies demonstrate an impact of SARS-CoV-2 infection on the hematopoietic system. The main objective of this study was to verify the effects of exposure of erythroid precursor cells (ErPCs) from patients with β-thalassemia to SARS-CoV-2 spike protein (S-protein) and the BNT162b2 vaccine. Erythropoietin (EPO)-cultured ErPCs have been either untreated or treated with S-protein or BNT162b2 vaccine. The employed ErPCs were from a β-thalassemia cellular Biobank developed before the COVID-19 pandemic. The genotypes were β+-IVSI-110/β+-IVSI-110 (one patient), β039/β+-IVSI-110 (3 patients), and β039/ β039 (2 patients). After treatment with S-protein or BNT162b2 for 5 days, lysates were analyzed by high performance liquid chromatography (HPLC), for hemoglobin production, and isolated RNA was assayed by RT-qPCR, for detection of globin gene expression. The main conclusions of the results obtained are that SARS-CoV-2 S-protein and BNT162b2 vaccine (a) inhibit fetal hemoglobin (HbF) production by β-thalassemic ErPCs and (b) inhibit γ-globin mRNA accumulation. In addition, we have performed in silico studies suggesting a high affinity of S-protein to HbF. Remarkably, the binding interaction energy of fetal hemoglobin to S-protein was comparable with that of angiotensin-converting enzyme 2 (ACE2). Our results are consistent with the hypothesis of a relevant impact of SARS-CoV-2 infection and COVID-19 vaccination on the hematopoietic system.
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Affiliation(s)
- Lucia Carmela Cosenza
- Department of Life Sciences and Biotechnology, Section of Biochemistry and Molecular Biology, University of Ferrara, Ferrara, Italy
| | - Giovanni Marzaro
- Department of Pharmaceutical and Pharmacological Sciences, University of Padova, Padova, Italy
| | - Matteo Zurlo
- Department of Life Sciences and Biotechnology, Section of Biochemistry and Molecular Biology, University of Ferrara, Ferrara, Italy
| | - Jessica Gasparello
- Department of Life Sciences and Biotechnology, Section of Biochemistry and Molecular Biology, University of Ferrara, Ferrara, Italy
| | - Cristina Zuccato
- Department of Life Sciences and Biotechnology, Section of Biochemistry and Molecular Biology, University of Ferrara, Ferrara, Italy; Center "Chiara Gemmo and Elio Zago" for the Research on Thalassemia, Department of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy
| | - Alessia Finotti
- Department of Life Sciences and Biotechnology, Section of Biochemistry and Molecular Biology, University of Ferrara, Ferrara, Italy; Center "Chiara Gemmo and Elio Zago" for the Research on Thalassemia, Department of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy
| | - Roberto Gambari
- Department of Life Sciences and Biotechnology, Section of Biochemistry and Molecular Biology, University of Ferrara, Ferrara, Italy; Center "Chiara Gemmo and Elio Zago" for the Research on Thalassemia, Department of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy.
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Allahyani M, Alshalawi AM, Alshalawii MR, Alqorashi SA, Aljuaid A, Almehmadi MM, Bokhary MA, Albrgey AS, Alghamdi AA, Aldairi AF, Alhazmi AS. Phenotypical evaluation of lymphocytes and monocytes in patients with type 2 diabetes mellitus in Saudi Arabia. Saudi Med J 2023; 44:296-305. [PMID: 36940958 PMCID: PMC10043885 DOI: 10.15537/smj.2023.44.3.20220873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2022] [Accepted: 02/15/2023] [Indexed: 03/22/2023] Open
Abstract
OBJECTIVES To evaluate the levels of total lymphocytes, B-lymphocytes (CD19+), T-lymphocytes (CD3+), natural killer (NK) cells (CD3-/CD56+), and monocyte subsets in type 2 diabetes mellitus (T2DM) patients in Saudi Arabia. In addition, this study aimed to evaluate whether B- and T-lymphocyte subsets are frequently altered in patients with T2DM. METHODS A case-control study included 95 participants recruited in the study: 62 patients with T2DM and 33 healthy individuals. All the patients were admitted to the Diabetic Centre in Taif, Saudi Arabia. Blood samples were collected between April and August 2022. The hemoglobin A1c (HbA1c) level was evaluated in all patients. Flow cytometry was used to measure the expression of B-lymphocyte, T-lymphocyte, NK cells, and monocyte markers. The unpaired t-test was carried out to evaluate the differences in these markers between T2DM patients and healthy individuals. RESULTS Patients with T2DM were associated with a lower percentage of total lymphocytes, higher percentage of B-lymphocytes, naive, and memory B subsets. In addition, patients with T2DM showed lower percentage of total T-lymphocytes (CD3+) and CD4 T-cells, but higher CD8 T-cell expression. Also, the NK-cell level was reduced in patients with T2DM, and the levels of monocyte subsets were altered. CONCLUSION These data suggested that levels of lymphocytes and monocytes are impaired in T2DM patients, and this might be associated with the higher risk of infections observed in these patients.
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Affiliation(s)
- Mamdouh Allahyani
- From the Department of Clinical Laboratory Sciences (Allahyani, Alshalawi, Alshalawii, Alqorashi, Aljuaid, Almehmadi, Alghamdi, Alhazmi), College of Applied Medical Sciences, Taif University, from the Department of Clinical Chemistry (Bokhar); from the Department of Endocrinology and Diabetic Centre (Albrgey), King Abdulaziz specialist hospital, Ministry of Health, Taif, and from the Department of Laboratory Medicine (Aldairi), Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah, Kingdom of Saudi Arabia.
| | - Amani M. Alshalawi
- From the Department of Clinical Laboratory Sciences (Allahyani, Alshalawi, Alshalawii, Alqorashi, Aljuaid, Almehmadi, Alghamdi, Alhazmi), College of Applied Medical Sciences, Taif University, from the Department of Clinical Chemistry (Bokhar); from the Department of Endocrinology and Diabetic Centre (Albrgey), King Abdulaziz specialist hospital, Ministry of Health, Taif, and from the Department of Laboratory Medicine (Aldairi), Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah, Kingdom of Saudi Arabia.
| | - Maram R. Alshalawii
- From the Department of Clinical Laboratory Sciences (Allahyani, Alshalawi, Alshalawii, Alqorashi, Aljuaid, Almehmadi, Alghamdi, Alhazmi), College of Applied Medical Sciences, Taif University, from the Department of Clinical Chemistry (Bokhar); from the Department of Endocrinology and Diabetic Centre (Albrgey), King Abdulaziz specialist hospital, Ministry of Health, Taif, and from the Department of Laboratory Medicine (Aldairi), Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah, Kingdom of Saudi Arabia.
| | - Shahad A. Alqorashi
- From the Department of Clinical Laboratory Sciences (Allahyani, Alshalawi, Alshalawii, Alqorashi, Aljuaid, Almehmadi, Alghamdi, Alhazmi), College of Applied Medical Sciences, Taif University, from the Department of Clinical Chemistry (Bokhar); from the Department of Endocrinology and Diabetic Centre (Albrgey), King Abdulaziz specialist hospital, Ministry of Health, Taif, and from the Department of Laboratory Medicine (Aldairi), Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah, Kingdom of Saudi Arabia.
| | - Abdulelah Aljuaid
- From the Department of Clinical Laboratory Sciences (Allahyani, Alshalawi, Alshalawii, Alqorashi, Aljuaid, Almehmadi, Alghamdi, Alhazmi), College of Applied Medical Sciences, Taif University, from the Department of Clinical Chemistry (Bokhar); from the Department of Endocrinology and Diabetic Centre (Albrgey), King Abdulaziz specialist hospital, Ministry of Health, Taif, and from the Department of Laboratory Medicine (Aldairi), Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah, Kingdom of Saudi Arabia.
| | - Mazen M. Almehmadi
- From the Department of Clinical Laboratory Sciences (Allahyani, Alshalawi, Alshalawii, Alqorashi, Aljuaid, Almehmadi, Alghamdi, Alhazmi), College of Applied Medical Sciences, Taif University, from the Department of Clinical Chemistry (Bokhar); from the Department of Endocrinology and Diabetic Centre (Albrgey), King Abdulaziz specialist hospital, Ministry of Health, Taif, and from the Department of Laboratory Medicine (Aldairi), Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah, Kingdom of Saudi Arabia.
| | - Mohammed A. Bokhary
- From the Department of Clinical Laboratory Sciences (Allahyani, Alshalawi, Alshalawii, Alqorashi, Aljuaid, Almehmadi, Alghamdi, Alhazmi), College of Applied Medical Sciences, Taif University, from the Department of Clinical Chemistry (Bokhar); from the Department of Endocrinology and Diabetic Centre (Albrgey), King Abdulaziz specialist hospital, Ministry of Health, Taif, and from the Department of Laboratory Medicine (Aldairi), Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah, Kingdom of Saudi Arabia.
| | - Alhanouf S. Albrgey
- From the Department of Clinical Laboratory Sciences (Allahyani, Alshalawi, Alshalawii, Alqorashi, Aljuaid, Almehmadi, Alghamdi, Alhazmi), College of Applied Medical Sciences, Taif University, from the Department of Clinical Chemistry (Bokhar); from the Department of Endocrinology and Diabetic Centre (Albrgey), King Abdulaziz specialist hospital, Ministry of Health, Taif, and from the Department of Laboratory Medicine (Aldairi), Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah, Kingdom of Saudi Arabia.
| | - Ahmad A. Alghamdi
- From the Department of Clinical Laboratory Sciences (Allahyani, Alshalawi, Alshalawii, Alqorashi, Aljuaid, Almehmadi, Alghamdi, Alhazmi), College of Applied Medical Sciences, Taif University, from the Department of Clinical Chemistry (Bokhar); from the Department of Endocrinology and Diabetic Centre (Albrgey), King Abdulaziz specialist hospital, Ministry of Health, Taif, and from the Department of Laboratory Medicine (Aldairi), Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah, Kingdom of Saudi Arabia.
| | - Abdullah F. Aldairi
- From the Department of Clinical Laboratory Sciences (Allahyani, Alshalawi, Alshalawii, Alqorashi, Aljuaid, Almehmadi, Alghamdi, Alhazmi), College of Applied Medical Sciences, Taif University, from the Department of Clinical Chemistry (Bokhar); from the Department of Endocrinology and Diabetic Centre (Albrgey), King Abdulaziz specialist hospital, Ministry of Health, Taif, and from the Department of Laboratory Medicine (Aldairi), Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah, Kingdom of Saudi Arabia.
| | - Ayman S. Alhazmi
- From the Department of Clinical Laboratory Sciences (Allahyani, Alshalawi, Alshalawii, Alqorashi, Aljuaid, Almehmadi, Alghamdi, Alhazmi), College of Applied Medical Sciences, Taif University, from the Department of Clinical Chemistry (Bokhar); from the Department of Endocrinology and Diabetic Centre (Albrgey), King Abdulaziz specialist hospital, Ministry of Health, Taif, and from the Department of Laboratory Medicine (Aldairi), Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah, Kingdom of Saudi Arabia.
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