1
|
Ochoa-Vázquez D, Rosas-Valdez R, Martínez-Salazar EA, Flores-Villela O. Identification of leopard frogs (Anura: Ranidae: Lithobates) distributed in some localities of the Southern Mexican Plateau using mitochondrial DNA sequences. Mitochondrial DNA A DNA Mapp Seq Anal 2019; 30:739-748. [PMID: 31271087 DOI: 10.1080/24701394.2019.1634697] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
Species of the genus Lithobates are difficult to identify, especially on the 'Rana pipiens' complex, because the morphological differences among the species are often subtle. In this study, we used 12S ribosomal RNA gene partial sequences to identify specimens of leopard frogs from some new localities (not sampled on previous studies) of the Southern Mexican Plateau, to carry out a phylogenetic analysis, and also a morphometric analysis of some morphological features were analyzed to evaluate their morphological variation. A phylogenetic analysis using partial sequences of 12S rDNA mitochondrial gene for 31 samples was carried out using Bayesian Inference, Maximum Parsimony, and Maximum Likelihood. In addition, 20 morphological lineal measurements from 97 specimens were analyzed by principal component analysis (PCA) to evaluate if the frogs studied are conspecific. Partial sequences of the 12S rDNA obtained from frogs distributed in the Southern Mexican Plateau show two haplotypes with a divergence of 0.4%. Phylogenetic hypothesis shows an exclusive group with a previous sequence of Lithobates montezumae. The PCA indicates that variables are not linearly correlated and specimens belong to a single group. Evidence found, let us consider that specimens studied belong to one species of the Lithobates montezumae subgroup, distributed principally in the Southern Mexican Plateau.
Collapse
Affiliation(s)
- Daniel Ochoa-Vázquez
- Laboratory of Biological Collections and Molecular Systematics, Academic Unit of Biological Sciences, Autonomous University of Zacatecas , Zacatecas , Mexico.,Master's Degree in Biological Sciences, Academic Unit of Biological Sciences, Autonomous University of Zacatecas , Zacatecas , Mexico
| | - Rogelio Rosas-Valdez
- Laboratory of Biological Collections and Molecular Systematics, Academic Unit of Biological Sciences, Autonomous University of Zacatecas , Zacatecas , Mexico
| | - Elizabeth A Martínez-Salazar
- Laboratory of Biological Collections and Molecular Systematics, Academic Unit of Biological Sciences, Autonomous University of Zacatecas , Zacatecas , Mexico
| | - Oscar Flores-Villela
- Museum of Zoology Alfonso L. Herrera. School of Sciences, National Autonomous University of Mexico , Mexico City
| |
Collapse
|
2
|
Hughes DF, Tolley KA, Behangana M, Lukwago W, Menegon M, Dehling JM, Stipala J, Tilbury CR, Khan AM, Kusamba C, Greenbaum E. Cryptic diversity in Rhampholeon boulengeri (Sauria: Chamaeleonidae), a pygmy chameleon from the Albertine Rift biodiversity hotspot. Mol Phylogenet Evol 2018; 122:125-141. [PMID: 29199108 PMCID: PMC6010225 DOI: 10.1016/j.ympev.2017.11.015] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2017] [Revised: 10/03/2017] [Accepted: 11/27/2017] [Indexed: 11/30/2022]
Abstract
Several biogeographic barriers in the Central African highlands have reduced gene flow among populations of many terrestrial species in predictable ways. Yet, a comprehensive understanding of mechanisms underlying species divergence in the Afrotropics can be obscured by unrecognized levels of cryptic diversity, particularly in widespread species. We implemented a multilocus phylogeographic approach to examine diversity within the widely distributed Central African pygmy chameleon, Rhampholeon boulengeri. Gene-tree analyses coupled with a comparative coalescent-based species delimitation framework revealed R. boulengeri as a complex of at least six genetically distinct species. The spatiotemporal speciation patterns for these cryptic species conform to general biogeographic hypotheses supporting vicariance as the main factor behind patterns of divergence in the Albertine Rift, a biodiversity hotspot in Central Africa. However, we found that parapatric species and sister species inhabited adjacent habitats, but were found in largely non-overlapping elevational ranges in the Albertine Rift, suggesting that differentiation in elevation was also an important mode of divergence. The phylogeographic patterns recovered for the genus-level phylogeny provide additional evidence for speciation by isolation in forest refugia, and dating estimates indicated that the Miocene was a significant period for this diversification. Our results highlight the importance of investigating cryptic diversity in widespread species to improve understanding of diversification patterns in environmentally diverse regions such as the montane Afrotropics.
Collapse
Affiliation(s)
- Daniel F Hughes
- Department of Biological Sciences, University of Texas at El Paso, El Paso, TX 79968, USA.
| | - Krystal A Tolley
- South African National Biodiversity Institute, Private Bag X7, Claremont, Cape Town, South Africa; Centre for Ecological Genomics and Wildlife Conservation, Department of Zoology, University of Johannesburg, Auckland Park 2000, Johannesburg, South Africa
| | - Mathias Behangana
- Department of Environmental Sciences, Makerere University, P.O. Box 7062, Kampala, Uganda
| | - Wilber Lukwago
- Department of Environmental Sciences, Makerere University, P.O. Box 7062, Kampala, Uganda
| | - Michele Menegon
- Tropical Biodiversity Section, MUSE - The Science Museum of Trento, Corso del Lavoro e della Scienza 3, Trento 38123, Italy
| | - J Maximilian Dehling
- Institut für Integrierte Naturwissenschaften, Abteilung Biologie, AG Zoologie, Universität Koblenz-Landau, Universitätsstraße 1, 56070 Koblenz, Germany
| | - Jan Stipala
- School of Biosciences, University of Exeter, Tremough Campus, Penryn, Cornwall TR10 9EZ, United Kingdom
| | - Colin R Tilbury
- Department of Botany & Zoology, University of Stellenbosch, Private Bag X1, Matieland, 7602 Stellenbosch, South Africa
| | - Arshad M Khan
- Department of Biological Sciences, University of Texas at El Paso, El Paso, TX 79968, USA
| | - Chifundera Kusamba
- Laboratoire d'Herpétologie, Département de Biologie, Centre de Recherche en Sciences Naturelles, Lwiro, Democratic Republic of the Congo
| | - Eli Greenbaum
- Department of Biological Sciences, University of Texas at El Paso, El Paso, TX 79968, USA
| |
Collapse
|
3
|
Peloso PL, Faivovich J, Grant T, Gasparini JL, Haddad CF. An Extraordinary New Species ofMelanophryniscus(Anura, Bufonidae) from Southeastern Brazil. AMERICAN MUSEUM NOVITATES 2012. [DOI: 10.1206/3762.2] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
|
4
|
Newman CE, Feinberg JA, Rissler LJ, Burger J, Shaffer HB. A new species of leopard frog (Anura: Ranidae) from the urban northeastern US. Mol Phylogenet Evol 2012; 63:445-55. [PMID: 22321689 PMCID: PMC4135705 DOI: 10.1016/j.ympev.2012.01.021] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2011] [Revised: 01/20/2012] [Accepted: 01/22/2012] [Indexed: 11/22/2022]
Abstract
Past confusion about leopard frog (genus Rana) species composition in the Tri-State area of the US that includes New York (NY), New Jersey (NJ), and Connecticut (CT) has hindered conservation and management efforts, especially where populations are declining or imperiled. We use nuclear and mitochondrial genetic data to clarify the identification and distribution of leopard frog species in this region. We focus on four problematic frog populations of uncertain species affiliation in northern NJ, southeastern mainland NY, and Staten Island to test the following hypotheses: (1) they are conspecific with Rana sphenocephala or R. pipiens, (2) they are hybrids between R. sphenocephala and R. pipiens, or (3) they represent one or more previously undescribed cryptic taxa. Bayesian phylogenetic and cluster analyses revealed that the four unknown populations collectively form a novel genetic lineage, which represents a previously undescribed cryptic leopard frog species, Rana sp. nov. Statistical support for R. sp. nov. was strong in both the Bayesian (pp=1.0) and maximum-likelihood (bootstrap=99) phylogenetic analyses as well as the Structure cluster analyses. While our data support recognition of R. sp. nov. as a novel species, we recommend further study including fine-scaled sampling and ecological, behavioral, call, and morphological analyses before it is formally described.
Collapse
Affiliation(s)
- Catherine E. Newman
- Department of Evolution and Ecology, University of California, Davis, CA 95616, USA
| | - Jeremy A. Feinberg
- Graduate Program in Ecology & Evolution, Department of Ecology, Evolution, and Natural Resources, Rutgers University, New Brunswick, NJ 08901, USA
| | - Leslie J. Rissler
- Department of Biological Sciences, University of Alabama, Tuscaloosa, AL 35487, USA
| | - Joanna Burger
- Graduate Program in Ecology & Evolution, Department of Ecology, Evolution, and Natural Resources, Rutgers University, New Brunswick, NJ 08901, USA
| | - H. Bradley Shaffer
- Department of Evolution and Ecology, University of California, Davis, CA 95616, USA
- Center for Population Biology, University of California, Davis, CA 95616, USA
| |
Collapse
|