1
|
Ma Q, Niu C, Wang C, Chen C, Li Y, Wei M. Effects of differentially expressed microRNAs induced by rootstocks and silicon on improving chilling tolerance of cucumber seedlings (Cucumis sativus L.). BMC Genomics 2023; 24:250. [PMID: 37165319 PMCID: PMC10173649 DOI: 10.1186/s12864-023-09337-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Accepted: 04/26/2023] [Indexed: 05/12/2023] Open
Abstract
BACKGROUND Rootstocks can improve the chilling tolerance of grafted cucumbers, but their effectiveness varies. Rootstocks with strong de-blooming capacity may result in lower chilling tolerance of grafted cucumbers compared to those with weak de-blooming capacity, while also reducing the silicon absorption. However, it remains unclear whether this reduction in chilling tolerance is due to differences in rootstock genotypes or the reduction in silicon absorption. RESULTS The chilling tolerance of cucumber seedlings was improved by using rootstocks and silicon nutrition. Rootstocks had a more significant effect than silicon nutrition, and the weak de-blooming rootstock 'Yunnan figleaf gourd' was superior to the strong de-blooming rootstock 'Huangchenggen No. 2'. Compared to self-rooted cucumber, twelve miRNAs were regulated by two rootstocks, including seven identical miRNAs (novel-mir23, novel-mir26, novel-mir30, novel-mir37, novel-mir46, miR395a and miR398a-3p) and five different miRNAs (novel-mir32, novel-mir38, novel-mir65, novel-mir78 and miR397a). Notably, four of these miRNAs (novel-mir38, novel-mir65, novel-mir78 and miR397a) were only identified in 'Yunnan figleaf gourd'-grafted cucumbers. Furthermore, six miRNAs (miR168a-5p, miR390a-5p, novel-mir26, novel-mir55, novel-mir67 and novel-mir70) were found to be responsive to exogenous silicon. Target gene prediction for 20 miRNAs resulted in 520 genes. Functional analysis of these target genes showed that 'Yunnan figleaf gourd' improves the chilling tolerance of cucumber by regulating laccase synthesis and sulfate metabolism, while 'Huangchenggen No. 2' and exogenous silicon reduced chilling stress damage to cucumber by regulating ROS scavenging and protein protection, respectively. CONCLUSION Among the identified miRNAs, novel-mir46 and miR398a-3p were found in cucumbers in response to chilling stress and two types of rootstocks. However, no identical miRNAs were identified in response to chilling stress and silicon. In addition, the differential expression of novel-mir38, novel-mir65, novel-mir78 and miR397a may be one of the important reasons for the differences in chilling tolerance of grafted cucumbers caused by two types of rootstocks.
Collapse
Affiliation(s)
- Qiang Ma
- College of Horticultural Science and Engineering, Shandong Agricultural University, Taian, 271018, China
| | - Chenxu Niu
- College of Horticultural Science and Engineering, Shandong Agricultural University, Taian, 271018, China
| | - Chao Wang
- College of Horticultural Science and Engineering, Shandong Agricultural University, Taian, 271018, China
- Scientific Observing and Experimental Station of Environment Controlled Agricultural Engineering in Huang-Huai-Hai Region, Ministry of Agriculture and Rural Affairs, Taian, 271018, China
- State Key Laboratory of Crop Biology, Taian, 271018, China
- Collaborative Innovation Center of Fruit & Vegetable Quality and Efficient Production in Shandong, Taian, 271018, China
| | - Chunhua Chen
- College of Horticultural Science and Engineering, Shandong Agricultural University, Taian, 271018, China
- State Key Laboratory of Crop Biology, Taian, 271018, China
- Collaborative Innovation Center of Fruit & Vegetable Quality and Efficient Production in Shandong, Taian, 271018, China
| | - Yan Li
- College of Horticultural Science and Engineering, Shandong Agricultural University, Taian, 271018, China
- Scientific Observing and Experimental Station of Environment Controlled Agricultural Engineering in Huang-Huai-Hai Region, Ministry of Agriculture and Rural Affairs, Taian, 271018, China
- State Key Laboratory of Crop Biology, Taian, 271018, China
- Collaborative Innovation Center of Fruit & Vegetable Quality and Efficient Production in Shandong, Taian, 271018, China
| | - Min Wei
- College of Horticultural Science and Engineering, Shandong Agricultural University, Taian, 271018, China.
- Scientific Observing and Experimental Station of Environment Controlled Agricultural Engineering in Huang-Huai-Hai Region, Ministry of Agriculture and Rural Affairs, Taian, 271018, China.
- State Key Laboratory of Crop Biology, Taian, 271018, China.
- Collaborative Innovation Center of Fruit & Vegetable Quality and Efficient Production in Shandong, Taian, 271018, China.
| |
Collapse
|
2
|
Luan H, Niu C, Nie X, Li Y, Wei M. Transcriptome and Physiological Analysis of Rootstock Types and Silicon Affecting Cold Tolerance of Cucumber Seedlings. PLANTS (BASEL, SWITZERLAND) 2022; 11:plants11030445. [PMID: 35161426 PMCID: PMC8838756 DOI: 10.3390/plants11030445] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Revised: 01/28/2022] [Accepted: 02/01/2022] [Indexed: 05/05/2023]
Abstract
Cucumbers grafted on rootstocks with different de-blooming capacity show varying levels of cold tolerance. The content of fruit bloom correlates with its silicon-metabolizing capacity, and rootstock grafting can alter not only the cold tolerance but also the silicon-metabolizing capacity of the scion. The molecular mechanisms responsible for resistance due to rootstocks and silicon and the pathway that affects cold tolerance, however, remain poorly understood. Therefore, we performed physiological and transcriptome analysis to clarify how rootstock types and silicon affect cold tolerance in cucumber seedlings. Then, we randomly selected eight differentially expressed genes (DEGs) for quantitative real time PCR (qRT-PCR) analysis to proof the reliability of the transcriptome data. The results showed that silicon can enhance the cold tolerance of cucumbers by boosting the phenylpropanoid metabolism, and rootstock grafting can boost the active oxygen scavenging ability and synthesis level of hormones in cucumbers and maintain the stability of the membrane structure to enhance cold tolerance. The difference in cold tolerance between the two rootstocks is because the cold-tolerant one has stronger metabolic and sharp signal transduction ability and can maintain the stability of photosynthesis, thereby contributing to the stability of the cellular system and enhancing tolerance to cold.
Collapse
Affiliation(s)
- Heng Luan
- College of Horticultural Science and Engineering, Shandong Agricultural University, Taian 271018, China; (H.L.); (C.N.); (X.N.); (Y.L.)
| | - Chenxu Niu
- College of Horticultural Science and Engineering, Shandong Agricultural University, Taian 271018, China; (H.L.); (C.N.); (X.N.); (Y.L.)
| | - Xinmiao Nie
- College of Horticultural Science and Engineering, Shandong Agricultural University, Taian 271018, China; (H.L.); (C.N.); (X.N.); (Y.L.)
| | - Yan Li
- College of Horticultural Science and Engineering, Shandong Agricultural University, Taian 271018, China; (H.L.); (C.N.); (X.N.); (Y.L.)
- Scientific Observing and Experimental Station of Environment Controlled Agricultural Engineering in Huang-Huai-Hai Region, Ministry of Agriculture and Rural Affairs, Taian 271018, China
- State Key Laboratory of Crop Biology, Taian 271018, China
- Collaborative Innovation Center of Fruit & Vegetable Quality and Efficient Production in Shandong, Taian 271018, China
| | - Min Wei
- College of Horticultural Science and Engineering, Shandong Agricultural University, Taian 271018, China; (H.L.); (C.N.); (X.N.); (Y.L.)
- Scientific Observing and Experimental Station of Environment Controlled Agricultural Engineering in Huang-Huai-Hai Region, Ministry of Agriculture and Rural Affairs, Taian 271018, China
- State Key Laboratory of Crop Biology, Taian 271018, China
- Collaborative Innovation Center of Fruit & Vegetable Quality and Efficient Production in Shandong, Taian 271018, China
- Correspondence: ; Tel.: +86-0538-824-6296
| |
Collapse
|
3
|
Miao L, Di Q, Sun T, Li Y, Duan Y, Wang J, Yan Y, He C, Wang C, Yu X. Integrated Metabolome and Transcriptome Analysis Provide Insights into the Effects of Grafting on Fruit Flavor of Cucumber with Different Rootstocks. Int J Mol Sci 2019; 20:ijms20143592. [PMID: 31340498 PMCID: PMC6678626 DOI: 10.3390/ijms20143592] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2019] [Revised: 07/08/2019] [Accepted: 07/16/2019] [Indexed: 11/20/2022] Open
Abstract
Rootstocks frequently exert detrimental effects on the fruit quality of grafted cucumber (Cucumis sativus L.) plants. To understand and ultimately correct this deficiency, a transcriptomic and metabolomic comparative analysis was performed among cucumber fruits from non-grafted plants (NG), and fruits from plants grafted onto different rootstocks of No.96 and No.45 (Cucurbita moschata. Duch), known to confer a different aroma and taste. We found remarkable changes in the primary metabolites of sugars, organic acids, amino acids, and alcohols in the fruit of the grafted cucumber plants with different rootstocks, compared to the non-grafted ones, especially No.45. We identified 140, 131, and 244 differentially expressed genes (DEGs) in the comparisons of GNo.96 vs. NG, GNo.45 vs. NG, and GNo.45 vs. GNo.96. The identified DEGs have functions involved in many metabolic processes, such as starch and sucrose metabolism; the biosynthesis of diterpenoid, carotenoid, and zeatin compounds; and plant hormone signal transduction. Members of the HSF, AP2/ERF-ERF, HB-HD-ZIP, and MYB transcription factor families were triggered in the grafted cucumbers, especially in the cucumber grafted on No.96. Based on a correlation analysis of the relationships between the metabolites and genes, we screened 10 candidate genes likely to be involved in sugar metabolism (Fructose-6-phosphate and trehalose), linoleic acid, and amino-acid (isoleucine, proline, and valine) biosynthesis in grafted cucumbers, and then confirmed the gene expression patterns of these genes by qRT-PCR. The levels of TPS15 (Csa3G040850) were remarkably increased in cucumber fruit with No.96 rootstock compared with No.45, suggesting changes in the volatile chemical production. Together, the results of this study improve our understanding of flavor changes in grafted cucumbers, and identify the candidate genes involved in this process.
Collapse
Affiliation(s)
- Li Miao
- Institute of Vegetables and Flowers, Chinese Academy of Agriculture Sciences, Beijing 100081, China
| | - Qinghua Di
- Institute of Vegetables and Flowers, Chinese Academy of Agriculture Sciences, Beijing 100081, China
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, College of Horticulture, China Agricultural University, Beijing 100193, China
| | - Tianshu Sun
- Institute of Vegetables and Flowers, Chinese Academy of Agriculture Sciences, Beijing 100081, China
| | - Yansu Li
- Institute of Vegetables and Flowers, Chinese Academy of Agriculture Sciences, Beijing 100081, China
| | - Ying Duan
- Institute of Vegetables and Flowers, Chinese Academy of Agriculture Sciences, Beijing 100081, China
| | - Jun Wang
- Institute of Vegetables and Flowers, Chinese Academy of Agriculture Sciences, Beijing 100081, China
| | - Yan Yan
- Institute of Vegetables and Flowers, Chinese Academy of Agriculture Sciences, Beijing 100081, China
| | - Chaoxing He
- Institute of Vegetables and Flowers, Chinese Academy of Agriculture Sciences, Beijing 100081, China
| | - Changlin Wang
- Institute of Vegetables and Flowers, Chinese Academy of Agriculture Sciences, Beijing 100081, China.
| | - Xianchang Yu
- Institute of Vegetables and Flowers, Chinese Academy of Agriculture Sciences, Beijing 100081, China.
| |
Collapse
|
4
|
Kyriacou MC, Rouphael Y, Colla G, Zrenner R, Schwarz D. Vegetable Grafting: The Implications of a Growing Agronomic Imperative for Vegetable Fruit Quality and Nutritive Value. FRONTIERS IN PLANT SCIENCE 2017; 8:741. [PMID: 28553298 PMCID: PMC5427113 DOI: 10.3389/fpls.2017.00741] [Citation(s) in RCA: 74] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2017] [Accepted: 04/20/2017] [Indexed: 05/19/2023]
Abstract
Grafting has become an imperative for intensive vegetable production since chlorofluorocarbon-based soil fumigants were banned from use on grounds of environmental protection. Compelled by this development, research into rootstock-scion interaction has broadened the potential applications of grafting in the vegetable industry beyond aspects of soil phytopathology. Grafting has been increasingly tapped for cultivation under adverse environs posing abiotic and biotic stresses to vegetable crops, thus enabling expansion of commercial production onto otherwise under-exploited land. Vigorous rootstocks have been employed not only in the open field but also under protected cultivation where increase in productivity improves distribution of infrastructural and energy costs. Applications of grafting have expanded mainly in two families: the Cucurbitaceae and the Solanaceae, both of which comprise major vegetable crops. As the main drives behind the expansion of vegetable grafting have been the resistance to soilborne pathogens, tolerance to abiotic stresses and increase in yields, rootstock selection and breeding have accordingly conformed to the prevailing demand for improving productivity, arguably at the expense of fruit quality. It is, however, compelling to assess the qualitative implications of this growing agronomic practice for human nutrition. Problems of impaired vegetable fruit quality have not infrequently been associated with the practice of grafting. Accordingly, the aim of the current review is to reassess how the practice of grafting and the prevalence of particular types of commercial rootstocks influence vegetable fruit quality and, partly, storability. Physical, sensorial and bioactive aspects of quality are examined with respect to grafting for watermelon, melon, cucumber, tomato, eggplant, and pepper. The physiological mechanisms at play which mediate rootstock effects on scion performance are discussed in interpreting the implications of grafting for the configuration of vegetable fruit physicochemical quality and nutritive value.
Collapse
Affiliation(s)
- Marios C. Kyriacou
- Department of Vegetable Crops, Agricultural Research InstituteNicosia, Cyprus
| | - Youssef Rouphael
- Department of Agricultural Sciences, University of Naples Federico IINaples, Italy
| | - Giuseppe Colla
- Department of Agricultural and Forestry Sciences, University of TusciaViterbo, Italy
| | - Rita Zrenner
- Leibniz Institute of Vegetable and Ornamental CropsGroßbeeren, Germany
| | - Dietmar Schwarz
- Leibniz Institute of Vegetable and Ornamental CropsGroßbeeren, Germany
| |
Collapse
|