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Jamil S, Gondal HY, Ali A, Hussain A, Akram N, Nisar M, Tahir MN, Ashfaq M, Raza AR, Muhammad S, Cheema ZM, Mustafai A, Sameeh MY. Benzimidazolium quaternary ammonium salts: synthesis, single crystal and Hirshfeld surface exploration supported by theoretical analysis. ROYAL SOCIETY OPEN SCIENCE 2024; 11:231094. [PMID: 38356872 PMCID: PMC10864785 DOI: 10.1098/rsos.231094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/29/2023] [Accepted: 01/12/2024] [Indexed: 02/16/2024]
Abstract
Owing to the broad applications of quaternary ammonium salts (QAS), we present the synthesis of benzimidazolium-based analogues with variation in the alkyl and alkoxy group at N-1 and N-3 positions. All the compounds were characterized by spectroscopic techniques and found stable to air and moisture both in the solid and solution state. Moreover, molecular structures were established through single-crystal X-ray diffraction studies. The crystal packing of the compounds was stabilized by numerous intermolecular interactions explored by Hirshfeld surface analysis. The enrichment ratio was calculated for the pairs of chemical species to acquire the highest propensity to form contacts. Void analysis was carried out to check the mechanical response of the compounds. Furthermore, theoretical investigations were also performed to explore the optoelectronic properties of compounds. Natural population analysis (NPA) has been conducted to evaluate the distribution of charges on the synthesized compounds, whereas high band gaps of the synthesized compounds by frontier molecular orbital (FMO) analysis indicated their stability. Nonlinear optical (NLO) analysis revealed that the synthesized QAS demonstrates significantly improved NLO behaviour than the standard urea.
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Affiliation(s)
- Sajid Jamil
- Institute of Chemistry, University of Sargodha, Sargodha, 40100, Pakistan
| | | | - Akbar Ali
- Department of Chemistry, Government College University Faisalabad, 38000 Faisalabad Pakistan
| | - Ajaz Hussain
- Institute of Chemical Sciences, Bahauddin Zakariya University Multan, 60800, Multan, Pakistan
| | - Nadia Akram
- Department of Chemistry, Government College University Faisalabad, 38000 Faisalabad Pakistan
| | - Muhammad Nisar
- Institute of Chemistry, University of Sargodha, Sargodha, 40100, Pakistan
| | | | - Muhammad Ashfaq
- Department of Physics, University of Sargodha, Sargodha, 40100 Pakistan
| | - Abdul Rauf Raza
- Institute of Chemistry, University of Sargodha, Sargodha, 40100, Pakistan
| | - Shabbir Muhammad
- Department of Chemistry, College of Science, King Khalid University, Abha 61413, PO Box 9004, Saudi Arabia
| | - Zain M. Cheema
- Institute of Chemistry, University of Sargodha, Sargodha, 40100, Pakistan
| | - Aleena Mustafai
- Institute of Chemical Sciences, Bahauddin Zakariya University Multan, 60800, Multan, Pakistan
| | - Manal Y. Sameeh
- Chemistry Department, Faculty of Applied Sciences, Al-Leith University College, Umm Al-Qura University, Makkah 24831, Saudi Arabia
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Erdoğan M, Başkan C, Serdaroğlu G. Substituted naphthoxy-phthalonitrile derivatives: Synthesis, substituent effects, DFT, TD-DFT Calculations, antimicrobial properties and DNA interaction studies. Comput Biol Chem 2023; 102:107798. [PMID: 36495747 DOI: 10.1016/j.compbiolchem.2022.107798] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Revised: 11/23/2022] [Accepted: 11/27/2022] [Indexed: 12/03/2022]
Abstract
Herein, substituted-naphthol derivatives 4a-e were synthesized in two steps, namely the Diels Alder cycloaddition and Cu-catalyzed aromatization reactions, respectively. Then, pththalonitrile derivatives 7-12 have been prepared by a nucleophilic displacement reaction of 3-nitrophthalonitrile with the naphthol derivatives 4a-e, 5 and, obtained in excellent yields. Structural characterization of the compounds was identified by different spectroscopic techniques. Antimicrobial properties of the synthesized compounds were determined by the microdilution procedure against Gram-positive, Gram-negative bacteria, and yeast. Furthermore, the DNA interaction of the compounds were determined by gel electrophoresis. One of the most prominent findings is that compounds 9 and 10 have more inhibitory effects on Gram-positive bacteria than Gram-negative bacteria. These compounds especially exhibited the highest antibacterial potency against S. aureus (625 µg/mL) among Gram-positive bacteria. According to the plasmid DNA interaction results, the synthesized compounds caused changes in the structure and mobility of the plasmid DNA. Then, geometry optimizations and frequency calculations were conducted at B3LYP/6-311 G(d,p) level of DFT, and optimized structures were used for further analyses. The NBO results revealed that the π→π * and n→π * interactions were greatly contributed to lowering the stabilization energy of all compounds (7-12). FMO energy analyses showed that compound 9 has the biggest electrodonating power.
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Affiliation(s)
- Musa Erdoğan
- Department of Food Engineering, Faculty of Engineering and Architecture, Kafkas University, Kars 36100, Turkey.
| | - Ceren Başkan
- Sabuncuoğlu Şerefeddin Health Services, Vocational School, Amasya University, Amasya, Turkiye.
| | - Goncagül Serdaroğlu
- Sivas Cumhuriyet University, Faculty of Education, Math. and Sci. Edu., 58140 Sivas, Turkey.
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Sisin NNT, Rahman WN. Potentials of Bismuth-Based Nanoparticles and Baicalein Natural Compounds as Radiosensitizers in Cancer Radiotherapy: a Review. BIONANOSCIENCE 2023. [DOI: 10.1007/s12668-022-01057-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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Uludag N, Üstün E, Serdaroğlu G. Strychnos alkaloids: total synthesis, characterization, DFT investigations, and molecular docking with AChE, BuChE, and HSA. Heliyon 2022; 8:e11990. [DOI: 10.1016/j.heliyon.2022.e11990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2022] [Revised: 10/23/2022] [Accepted: 11/23/2022] [Indexed: 12/12/2022] Open
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Uludag N, Serdaroğlu G, Sugumar P, Rajkumar P, Colak N, Ercag E. Synthesis of thiophene derivatives: Substituent effect, antioxidant activity, cyclic voltammetry, molecular docking, DFT, and TD-DFT calculations. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132607] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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An efficient studies on C-2 cyanomethylation of the indole synthesis: The electronic and spectroscopic characterization (FT-IR, NMR, UV-Vis), antioxidant activity, and theoretical calculations. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131416] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Niranjani S, Nirmala C, Rajkumar P, Serdaroğlu G, Jayaprakash N, Venkatachalam K. Synthesis, characterization, biological and DFT studies of charge-transfer complexes of antihyperlipidemic drug atorvastatin calcium with Iodine, Chloranil, and DDQ. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.117862] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Kaya Y, Erçağ A, Serdaroğlu G, Kaya S, Grillo IB, Rocha GB. Synthesis, spectroscopic characterization, DFT calculations, and molecular docking studies of new unsymmetric bishydrazone derivatives. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.131224] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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(-)-Tubifolidine as strychnos indole alkaloid: Spectroscopic charactarization (FT-IR, NMR, UV-Vis), antioxidant activity, molecular docking, and DFT studies. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130978] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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Erdoğan M, Serdaroğlu G. New Hybrid (E)‐4‐((pyren‐1‐ylmethylene)amino)‐N‐(thiazol‐2‐yl)benzenesulfonamide as a Potential Drug Candidate: Spectroscopy, TD‐DFT, NBO, FMO, and MEP Studies**. ChemistrySelect 2021. [DOI: 10.1002/slct.202102602] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Musa Erdoğan
- Department of Food Engineering Faculty of Engineering and Architecture Kafkas University Kars 36100 Turkey
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Missioui M, Mortada S, Guerrab W, Serdaroğlu G, Kaya S, Mague JT, Essassi EM, Faouzi MEA, Ramli Y. Novel antioxidant quinoxaline derivative: Synthesis, crystal structure, theoretical studies, antidiabetic activity and molecular docking study. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130484] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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Serdaroğlu G, Şahin N, Şahin-Bölükbaşı S, Üstün E. Novel Ag(I)-NHC complex: synthesis, in vitro cytotoxic activity, molecular docking, and quantum chemical studies. ACTA ACUST UNITED AC 2021; 77:21-36. [PMID: 34225394 DOI: 10.1515/znc-2021-0130] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2021] [Accepted: 06/15/2021] [Indexed: 12/18/2022]
Abstract
The importance of organometallic complexes in cancer biology has attracted attention in recent years. In this paper, we look for the in vitro cytotoxic capability of novel benzimidazole-based N-heterocyclic carbene (NHC) precursor (1) and its Ag(I)-NHC complex (2). For this purpose, these novel Ag(I)-NHC complex (2) was characterized by spectroscopic techniques (1H, 13C{1H} nuclear magnetic resonance (NMR), and Fourier-transform infrared spectroscopy (FT-IR)). Then, in vitro cytotoxic activities of NHC precursor (1) and Ag(I)-NHC complex (2) were investigated against MCF-7, MDA-MB-231 human breast, DU-145 prostate cancer cells, and L-929 healthy cells using MTT assay for 24, 48, and 72 h incubation times. Ag(I)-NHC complex (2) showed promising in vitro cytotoxic activity against all cell lines for three incubation times, with IC50 values lower than 5 µM. It was also determined that (NHC) precursor (1) were lower in vitro cytotoxic activity than Ag(I)-NHC complex (2) against all cell lines. Selectivity indexes (SIs) of Ag(I)-NHC complex (2) against cancer cells were found higher than 2 for 24 and 48 h incubation time. Besides, the electronic structure and spectroscopic data of the newly synthesized precursor and its Ag-complex have been supported by density functional theory (DFT) calculations and molecular docking analysis. After, the anticancer activity of these compounds has been discussed considering the results of the frontier molecular orbital analysis. We hope that the obtained results from the experiments and computational tools will bring a new perspective to cancer research in terms of supported by quantum chemical calculations.
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Affiliation(s)
- Goncagül Serdaroğlu
- Math. and Sci. Edu., Faculty of Education, Sivas Cumhuriyet University, 58140 Sivas, Turkey
| | - Neslihan Şahin
- Department of Basic Education, Faculty of Education, Sivas Cumhuriyet University, 58140 Sivas, Turkey
- Department of Chemistry, Faculty of Science and Art, İnönü University, 44280 Malatya, Turkey
- Catalysis Research, and Application Center, İnönü University, 44280 Malatya, Turkey
| | - Serap Şahin-Bölükbaşı
- Department of Biochemistry, Faculty of Pharmacy, Sivas Cumhuriyet University, 58140 Sivas, Turkey
| | - Elvan Üstün
- Department of Chemistry, Faculty of Science and Art, Ordu University, 52200 Ordu, Turkey
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Carbazole derivatives: Synthesis, spectroscopic characterization, antioxidant activity, molecular docking study, and the quantum chemical calculations. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.115651] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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