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Dias D, Fonseca C, Mendo S, Caetano T. First characterization of the faecal resistome of eurasian otter (Lutra lutra), a sentinel species for aquatic environments. CHEMOSPHERE 2022; 309:136644. [PMID: 36181859 DOI: 10.1016/j.chemosphere.2022.136644] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2021] [Revised: 09/17/2022] [Accepted: 09/26/2022] [Indexed: 06/16/2023]
Abstract
Antimicrobial resistance (AMR) is a global health concern. Nowadays, antibiotic resistance genes (ARGs) are considered emerging pollutants. This study followed the One Health framework, in which AMR surveillance in the environment, including in wild animals, is advisable to mitigate this problem. Here we investigated AMR associated with Eurasian otter, a semi-aquatic mammal considered an indicator of freshwater health. To do so, otter's faecal resistome was characterized by a high-throughput qPCR array. This technique has a high-capacity of ARGs profiling. Additionally, we have assessed the antimicrobial susceptibility of two indicator bacteria, E. coli and Enterococcus spp, isolated from otter spraints and interpreted the results according to clinical and epidemiological cut-offs (ECOFFs).
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Affiliation(s)
- Diana Dias
- CESAM and Department of Biology, University of Aveiro, Campus de Santiago, 3810-193, Aveiro, Portugal
| | - Carlos Fonseca
- CESAM and Department of Biology, University of Aveiro, Campus de Santiago, 3810-193, Aveiro, Portugal; ForestWISE - Collaborative Laboratory for Integrated Forest & Fire Management, Quinta de Prados, 5001-801, Vila Real, Portugal
| | - Sónia Mendo
- CESAM and Department of Biology, University of Aveiro, Campus de Santiago, 3810-193, Aveiro, Portugal
| | - Tânia Caetano
- CESAM and Department of Biology, University of Aveiro, Campus de Santiago, 3810-193, Aveiro, Portugal.
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2
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Ellis-Soto D, Ferraro KM, Rizzuto M, Briggs E, Monk JD, Schmitz OJ. A methodological roadmap to quantify animal-vectored spatial ecosystem subsidies. J Anim Ecol 2021; 90:1605-1622. [PMID: 34014558 DOI: 10.1111/1365-2656.13538] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Accepted: 05/04/2021] [Indexed: 12/31/2022]
Abstract
Energy, nutrients and organisms move over landscapes, connecting ecosystems across space and time. Meta-ecosystem theory investigates the emerging properties of local ecosystems coupled spatially by these movements of organisms and matter, by explicitly tracking exchanges of multiple substances across ecosystem borders. To date, meta-ecosystem research has focused mostly on abiotic flows-neglecting biotic nutrient flows. However, recent work has indicated animals act as spatial nutrient vectors when they transport nutrients across landscapes in the form of excreta, egesta and their own bodies. Partly due to its high level of abstraction, there are few empirical tests of meta-ecosystem theory. Furthermore, while animals may be viewed as important mediators of ecosystem functions, better integration of tools is needed to develop predictive insights of their relative roles and impacts on diverse ecosystems. We present a methodological roadmap that explains how to do such integration by discussing how to combine insights from movement, foraging and ecosystem ecology to develop a coherent understanding of animal-vectored nutrient transport on meta-ecosystems processes. We discuss how the slate of newly developed technologies and methods-tracking devices, mechanistic movement models, diet reconstruction techniques and remote sensing-that when integrated have the potential to advance the quantification of animal-vectored nutrient flows and increase the predictive power of meta-ecosystem theory. We demonstrate that by integrating novel and established tools of animal ecology, ecosystem ecology and remote sensing, we can begin to identify and quantify animal-mediated nutrient translocation by large animals. We also provide conceptual examples that show how our proposed integration of methodologies can help investigate ecosystem impacts of large animal movement. We conclude by describing practical advancements to understanding cross-ecosystem contributions of animals on the move. Understanding the mechanisms by which animals shape ecosystem dynamics is important for ongoing conservation, rewilding and restoration initiatives around the world, and for developing more accurate models of ecosystem nutrient budgets. Our roadmap will enable ecologists to better qualify and quantify animal-mediated nutrient translocation for animals on the move.
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Affiliation(s)
- Diego Ellis-Soto
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA.,Center for Biodiversity and Global Change, Yale University, New Haven, CT, USA
| | | | - Matteo Rizzuto
- Department of Biology, Memorial University of Newfoundland, St. John's, Canada
| | - Emily Briggs
- School of the Environment, Yale University, New Haven, CT, USA.,Department of Anthropology, Yale University, New Haven, CT, USA
| | - Julia D Monk
- School of the Environment, Yale University, New Haven, CT, USA
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3
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Relationships of otter populations with fish, macroinvertebrates and water quality across three Korean rivers revealed by inferential modelling based on evolutionary computation. ECOL INFORM 2020. [DOI: 10.1016/j.ecoinf.2020.101108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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4
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Obrist DS, Hanly PJ, Kennedy JC, Fitzpatrick OT, Wickham SB, Ernst CM, Nijland W, Reshitnyk LY, Darimont CT, Starzomski BM, Reynolds JD. Marine subsidies mediate patterns in avian island biogeography. Proc Biol Sci 2020; 287:20200108. [PMID: 32156206 PMCID: PMC7126081 DOI: 10.1098/rspb.2020.0108] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
The classical theory of island biogeography, which predicts species richness using island area and isolation, has been expanded to include contributions from marine subsidies, i.e. subsidized island biogeography (SIB) theory. We tested the effects of marine subsidies on species diversity and population density on productive temperate islands, evaluating SIB predictions previously untested at comparable scales and subsidy levels. We found that the diversity of terrestrial breeding bird communities on 91 small islands (approx. 0.0001–3 km2) along the Central Coast of British Columbia, Canada were correlated most strongly with island area, but also with marine subsidies. Species richness increased and population density decreased with island area, but isolation had no measurable influence. Species richness was negatively correlated with marine subsidy, measured as forest-edge soil δ15N. Density, however, was higher on islands with higher marine subsidy, and a negative interaction between area and subsidy indicates that this effect is stronger on smaller islands, offering some support for SIB. Our study emphasizes how subsidies from the sea can shape diversity patterns on islands and can even exceed the importance of isolation in determining species richness and densities of terrestrial biota.
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Affiliation(s)
- Debora S Obrist
- Earth to Ocean Research Group, Department of Biological Sciences, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, Canada V5A 1S6.,Hakai Institute, PO Box 309, Heriot Bay, British Columbia, Canada V0P 1H0
| | - Patrick J Hanly
- Earth to Ocean Research Group, Department of Biological Sciences, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, Canada V5A 1S6.,Hakai Institute, PO Box 309, Heriot Bay, British Columbia, Canada V0P 1H0
| | - Jeremiah C Kennedy
- Earth to Ocean Research Group, Department of Biological Sciences, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, Canada V5A 1S6.,Hakai Institute, PO Box 309, Heriot Bay, British Columbia, Canada V0P 1H0
| | - Owen T Fitzpatrick
- Hakai Institute, PO Box 309, Heriot Bay, British Columbia, Canada V0P 1H0.,School of Environmental Studies, University of Victoria, 3800 Finnerty Road, Victoria, British Columbia, Canada V8P 5C2
| | - Sara B Wickham
- Hakai Institute, PO Box 309, Heriot Bay, British Columbia, Canada V0P 1H0.,School of Environmental Studies, University of Victoria, 3800 Finnerty Road, Victoria, British Columbia, Canada V8P 5C2
| | - Christopher M Ernst
- Earth to Ocean Research Group, Department of Biological Sciences, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, Canada V5A 1S6.,Hakai Institute, PO Box 309, Heriot Bay, British Columbia, Canada V0P 1H0
| | - Wiebe Nijland
- Hakai Institute, PO Box 309, Heriot Bay, British Columbia, Canada V0P 1H0.,School of Environmental Studies, University of Victoria, 3800 Finnerty Road, Victoria, British Columbia, Canada V8P 5C2.,Department of Physical Geography, Utrecht University, Princetonlaan 8a, 3584 CB Utrecht, The Netherlands
| | - Luba Y Reshitnyk
- Hakai Institute, PO Box 309, Heriot Bay, British Columbia, Canada V0P 1H0
| | - Chris T Darimont
- Hakai Institute, PO Box 309, Heriot Bay, British Columbia, Canada V0P 1H0.,Department of Geography, University of Victoria, 3800 Finnerty Road, Victoria, British Columbia, Canada V8P 5C2.,Raincoast Conservation Foundation, PO Box 2429, Sidney, British Columbia, Canada V8L 3Y3
| | - Brian M Starzomski
- Hakai Institute, PO Box 309, Heriot Bay, British Columbia, Canada V0P 1H0.,School of Environmental Studies, University of Victoria, 3800 Finnerty Road, Victoria, British Columbia, Canada V8P 5C2
| | - John D Reynolds
- Earth to Ocean Research Group, Department of Biological Sciences, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, Canada V5A 1S6.,Hakai Institute, PO Box 309, Heriot Bay, British Columbia, Canada V0P 1H0
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Juarez-Sanchez D, Blake JG, Hellgren EC. Variation in Neotropical river otter (Lontra longicaudis) diet: Effects of an invasive prey species. PLoS One 2019; 14:e0217727. [PMID: 31581191 PMCID: PMC6776311 DOI: 10.1371/journal.pone.0217727] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2019] [Accepted: 09/10/2019] [Indexed: 11/19/2022] Open
Abstract
Predation is one of the main barriers that exotic species may face in newly colonized areas and may help stop or control the potential negative impacts of invasive species in the environment. We evaluated if the consumption of an invasive prey (armored catfish: Pterygoplichtys sp.) affects the dietary niche breadth and trophic level of a native predator (Neotropical river otter: Lontra longicaudis) in northern Guatemala. We examined otter scats from three rivers: two where the invasive armored catfish occurred and one without the invasive fish. Samples were collected two and seven years after the first report of the catfish in the area. We performed gross scat analysis and stable isotope analyses of nitrogen and carbon of fecal matter. Where the invasive armored catfish occurred, it was the main prey item for L. longicaudis. Particularly in the river outside of protected areas seven years after the first report of the catfish, where it accounted for 49% of the otter diet. Concordance was found between the two techniques to estimate dietary niche breadth and trophic level. The dietary niche breath of otters was narrower seven years after the invasion in comparison to two years after the invasion in both invaded rivers, but the extent of the reduction was lesser inside the protected area. Finally, the trophic level of otters also showed a reduction related to the occurrence of the armored catfish in their diet.
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Affiliation(s)
- Diego Juarez-Sanchez
- Department of Wildlife Ecology and Conservation, University of Florida, Gainesville, Florida United States of America
| | - John G. Blake
- Department of Wildlife Ecology and Conservation, University of Florida, Gainesville, Florida United States of America
| | - Eric C. Hellgren
- Department of Wildlife Ecology and Conservation, University of Florida, Gainesville, Florida United States of America
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6
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Conradie SR, Hall G, Somers MJ, McIntyre T. Limited Animal-Facilitated Nutrient Transfer across an Aquatic–Terrestrial Interface in a Southern African Savanna. AFRICAN JOURNAL OF WILDLIFE RESEARCH 2019. [DOI: 10.3957/056.049.0052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
Affiliation(s)
- Shannon R. Conradie
- Mammal Research Institute, Department of Zoology and Entomology, University of Pretoria, Private Bag X20, Hatfield, 0028, South Africa
| | - Grant Hall
- Mammal Research Institute, Department of Zoology and Entomology, University of Pretoria, Private Bag X20, Hatfield, 0028, South Africa
| | - Michael J. Somers
- Mammal Research Institute, Department of Zoology and Entomology, University of Pretoria, Private Bag X20, Hatfield, 0028, South Africa
| | - Trevor McIntyre
- Mammal Research Institute, Department of Zoology and Entomology, University of Pretoria, Private Bag X20, Hatfield, 0028, South Africa
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7
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Schlichting PE, Love CN, Webster SC, Beasley JC. Efficiency and composition of vertebrate scavengers at the land-water interface in the Chernobyl Exclusion Zone. FOOD WEBS 2019. [DOI: 10.1016/j.fooweb.2018.e00107] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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8
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Camera traps at northern river otter latrines enhance carnivore detectability along riparian areas in eastern North America. Glob Ecol Conserv 2016. [DOI: 10.1016/j.gecco.2016.08.010] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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9
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Vander Zanden HB, Soto DX, Bowen GJ, Hobson KA. Expanding the Isotopic Toolbox: Applications of Hydrogen and Oxygen Stable Isotope Ratios to Food Web Studies. Front Ecol Evol 2016. [DOI: 10.3389/fevo.2016.00020] [Citation(s) in RCA: 79] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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10
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Godwin BL, Albeke SE, Bergman HL, Walters A, Ben-David M. Density of river otters (Lontra canadensis) in relation to energy development in the Green River Basin, Wyoming. THE SCIENCE OF THE TOTAL ENVIRONMENT 2015; 532:780-790. [PMID: 26125409 DOI: 10.1016/j.scitotenv.2015.06.058] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2015] [Accepted: 06/15/2015] [Indexed: 06/04/2023]
Abstract
Exploration and extraction of oil and natural gas have increased in recent years and are expected to expand in the future. Reduction in water quality from energy extraction may negatively affect water supply for agriculture and urban use within catchments as well as down river. We used non-invasive genetic techniques and capture-recapture modeling to estimate the abundance and density of North American river otters (Lontra canadensis), a sentinel species of aquatic ecosystems, in Southwestern Wyoming. While densities in two of three river reaches were similar to those reported in other freshwater systems in the western US (1.45-2.39 km per otter), otters appeared to avoid areas near energy development. We found no strong difference in habitat variables, such as overstory cover, at the site or reach level. Also, fish abundance was similar among the three river reaches. Otter activity in our study area could have been affected by elevated levels of disturbance surrounding the industrial gas fields, and by potential surface water contamination as indicated by patterns in water conductivity. Continued monitoring of surface water quality in Southwestern Wyoming with the aid of continuously recording devices and sentinel species is warranted.
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Affiliation(s)
- B L Godwin
- Department of Zoology and Physiology, University of Wyoming, Laramie, WY 82071, USA; Program in Ecology, University of Wyoming, Laramie, WY 82071, USA
| | - S E Albeke
- Wyoming Geographic Science Center, University of Wyoming, Laramie, WY 82071, USA; Program in Ecology, University of Wyoming, Laramie, WY 82071, USA
| | - H L Bergman
- Department of Zoology and Physiology, University of Wyoming, Laramie, WY 82071, USA
| | - A Walters
- US Geological Survey, Wyoming Cooperative Fish and Wildlife Research Unit, University of Wyoming, Laramie, WY 82071, USA; Program in Ecology, University of Wyoming, Laramie, WY 82071, USA
| | - M Ben-David
- Department of Zoology and Physiology, University of Wyoming, Laramie, WY 82071, USA; Program in Ecology, University of Wyoming, Laramie, WY 82071, USA.
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11
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Summer Diet Characteristics of North American River Otters (Lontra canadensis) in Central Illinois. AMERICAN MIDLAND NATURALIST 2015. [DOI: 10.1674/amid-173-02-294-304.1] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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12
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Bentzen TW, Shideler RT, O'Hara TM. Use of stable isotope analysis to identify food-conditioned grizzly bears on Alaska's North Slope. URSUS 2014. [DOI: 10.2192/ursus-d-13-00002.1] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Affiliation(s)
| | | | - Todd M. O'Hara
- Department of Veterinary Medicine, College of Natural Sciences and Mathematics, University of Alaska-Fairbanks, Fairbanks, AK 99775, USA
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13
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The role of prey abundance and flow regulation in the marking behaviour of Eurasian otters in a Mediterranean catchment. Anim Behav 2012. [DOI: 10.1016/j.anbehav.2012.09.020] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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14
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15
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Crowley S, Johnson CJ, Hodder D. Spatial and behavioral scales of habitat selection and activity by river otters at latrine sites. J Mammal 2012. [DOI: 10.1644/10-mamm-a-362.1] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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16
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Vander Zanden HB, Bjorndal KA, Inglett PW, Bolten AB. Marine-derived Nutrients from Green Turtle Nests Subsidize Terrestrial Beach Ecosystems. Biotropica 2011. [DOI: 10.1111/j.1744-7429.2011.00827.x] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Hannah B. Vander Zanden
- Department of Biology and Archie Carr Center for Sea Turtle Research; University of Florida; PO Box 118525; Gainesville; Florida; 32611-8525; USA
| | - Karen A. Bjorndal
- Department of Biology and Archie Carr Center for Sea Turtle Research; University of Florida; PO Box 118525; Gainesville; Florida; 32611-8525; USA
| | - Patrick W. Inglett
- Department of Soil and Water Science; University of Florida; PO Box 110510; Gainesville; Florida; 32611-0510; USA
| | - Alan B. Bolten
- Department of Biology and Archie Carr Center for Sea Turtle Research; University of Florida; PO Box 118525; Gainesville; Florida; 32611-8525; USA
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Abstract
Predators are predominantly valued for their ability to control prey, as indicators of high levels of biodiversity and as tourism attractions. This view, however, is incomplete because it does not acknowledge that predators may play a significant role in the delivery of critical life-support services such as ecosystem nutrient cycling. New research is beginning to show that predator effects on nutrient cycling are ubiquitous. These effects emerge from direct nutrient excretion, egestion or translocation within and across ecosystem boundaries after prey consumption, and from indirect effects mediated by predator interactions with prey. Depending on their behavioural ecology, predators can create heterogeneous or homogeneous nutrient distributions across natural landscapes. Because predator species are disproportionately vulnerable to elimination from ecosystems, we stand to lose much more from their disappearance than their simple charismatic attractiveness.
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Affiliation(s)
- Oswald J Schmitz
- School of Forestry and Environmental Studies, Yale University, New Haven, CT 06511, USA.
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Roe AM, Meyer CB, Nibbelink NP, Ben-David M. Differential tree and shrub production in response to fertilization and disturbance by coastal river otters in Alaska. Ecology 2010; 91:3177-88. [PMID: 21141179 DOI: 10.1890/09-1216.1] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
We explored the interacting effects of marine-derived nutrient fertilization and physical disturbance introduced by coastal river otters (Lontra canadensis) on the production and nutrient status of pristine shrub and tree communities in Prince William Sound, Alaska, USA. We compared production of trees and shrubs between latrines and non-latrines, while accounting for otter site selection, by sampling areas on and off sites. Nitrogen stable isotope analysis (delta15N) indicated that dominant tree and shrub species assimilated the marine-derived N excreted by otters. In association with this uptake, tree production increased, but shrub density and nonwoody aboveground shrub production decreased. The reduced shrub production was caused by destruction of ramets, especially blueberry (Vaccinium spp.), through physical disturbance by river otters. False azalea (Menziesia ferruginea) ramets were less sensitive to otter disturbance. Although surviving individual blueberry ramets showed a tendency for increased production per plant, false azalea allocated excess N to storage in leaves rather than growth. We found that plant responses to animal activity vary among species and levels of biological organization (leaf, plant, ecosystem). Such differences should be accounted for when assessing the influence of river otters on the carbon budget of Alaskan coastal forests at the landscape scale.
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Affiliation(s)
- Aaron M Roe
- Department of Botany, University of Wyoming, Laramie, Wyoming 82071, USA
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