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Biodegradation of chemicals tested in mixtures and individually: mixture effects on biodegradation kinetics and microbial composition. Biodegradation 2023; 34:139-153. [PMID: 36595149 DOI: 10.1007/s10532-022-10009-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Accepted: 12/12/2022] [Indexed: 01/04/2023]
Abstract
Biodegradation in the aquatic environment occurs in the presence of many chemicals, while standard simulation biodegradation tests are conducted with single chemicals. This study aimed to investigate the effect of the presence of additional chemicals on (1) biodegradation kinetics of individual chemicals and (2) the microbial composition in test systems. Parallel mixture and single substance experiments were conducted for 9 chemicals (phenethyl benzoate, oxacycloheptadec-10-en-2-one, α-ionone, methyl 2-naphthyl ether, decan-5-olide, octan-2-one, 2'-acetonaphthanone, methyl N-methylanthranilate, (+)-menthone) using inoculum from a Danish stream. Biotic and abiotic test systems were incubated at 12 °C for 1-30 days. Primary biodegradation kinetics were then determined from biotic/abiotic peak area ratios using SPME GC/MS analysis. The effect of the mixture on biodegradation varied with test chemical and was more pronounced for chemicals with lag-phases above 14 days: two chemicals degraded in the mixture but not when tested alone (i.e., positive mixture effect), and two degraded when tested alone but not in the mixture (i.e., negative mixture effect). Microbial composition (16S rRNA gene amplicon sequencing) was highly affected by 14 days incubation and the presence of the mixture (significant carbon source), but less by single chemicals (low carbon source). Growth on chemical mixtures resulted in consistent proliferation of Pseudomonas and Malikia, while specific chemicals increased the abundance of putative degraders belonging to Novosphingobium and Zoogloea. The chemical and microbiological results support (1) that simulation biodegradation kinetics should be determined in mixtures at low environmentally relevant concentrations and (2) that degradation times beyond some weeks are associated with more uncertainty.
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2
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Nassar HN, Rabie AM, Abu Amr SS, El-Gendy NS. Kinetic and statistical perspectives on the interactive effects of recalcitrant polyaromatic and sulfur heterocyclic compounds and in-vitro nanobioremediation of oily marine sediment at microcosm level. ENVIRONMENTAL RESEARCH 2022; 209:112768. [PMID: 35085558 DOI: 10.1016/j.envres.2022.112768] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Revised: 01/10/2022] [Accepted: 01/17/2022] [Indexed: 06/14/2023]
Abstract
A halotolerant biosurfactant producer Pseudomonas aeruginosa strain NSH3 (NCBI Gene Bank Accession No. MN149622) was isolated to degrade high concentrations of recalcitrant polyaromatic hydrocarbons (PAHs) and polyaromatic heterocyclic sulfur compounds (PASHs). In biphasic batch bioreactors, the biodegradation and biosurfactant-production activities of NSH3 have been significantly enhanced (p < 0.0001) by its decoration with eco-friendly prepared magnetite nanoparticles (MNPs). On an artificially contaminated sediment microcosm level, regression modeling and statistical analysis based on a 23 full factorial design of experiments were trendily applied to provide insights into the interactive impacts of such pollutants. MNPs-coated NSH3 were also innovatively applied for nanobioremediation (NBR) of in-vitro diesel oil-polluted sediment microcosms. Gravimetric, chromatographic, and microbial respiratory analyses proved the significantly enhanced biodegradation capabilities of MNPs-coated NSH3 (p < 0.001) and the complete mineralization of various recalcitrant diesel oil components. Kinetic analyses showed that the biodegradation of iso- and n-alkanes was best fitted with a second-order kinetic model equation. Nevertheless, PAHs and PASHs in biphasic batch bioreactors and sediment microcosms followed the first-order kinetic model equation. Sustainable NBR overcome the toxicity of low molecular weight hydrocarbons, mass transfer limitation, and steric hindrance of hydrophobic recalcitrant high molecular weight hydrocarbons and alkylated polyaromatic compounds.
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Affiliation(s)
- Hussein N Nassar
- Egyptian Petroleum Research Institute (EPRI), Nasr City, Cairo, PO, 11727, Egypt; Center of Excellence, October University for Modern Sciences and Arts (MSA), 6(th) of October City, Giza, PO, 12566, Egypt
| | - Abdelrahman M Rabie
- Egyptian Petroleum Research Institute (EPRI), Nasr City, Cairo, PO, 11727, Egypt
| | - Salem S Abu Amr
- Department of Chemical and Environmental Engineering, Faculty of Engineering, Karabuk University, Demir Campus, Karabuk, PO, 78050, Turkey
| | - Nour Sh El-Gendy
- Egyptian Petroleum Research Institute (EPRI), Nasr City, Cairo, PO, 11727, Egypt; Center of Excellence, October University for Modern Sciences and Arts (MSA), 6(th) of October City, Giza, PO, 12566, Egypt.
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3
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Structural Selectivity of PAH Removal Processes in Soil, and the Effect of Metal Co-Contaminants. ENVIRONMENTS 2022. [DOI: 10.3390/environments9020023] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) form a convenient structural series of molecules with which to examine the selectivity exerted on their removal by soil microbiota. It is known that there is an inverse relationship between PAH molecular size and degradation rates in soil. In this paper, we look at how the magnitude of the slope for this relationship, m, can be used as an indicator of the effect of metal co-contaminants on degradation rates across a range of PAH molecular weights. The analysis utilises data collected from our previous microcosm study (Deary, M.E.; Ekumankama, C.C.; Cummings, S.P. Development of a novel kinetic model for the analysis of PAH biodegradation in the presence of lead and cadmium co-contaminants. Journal of Hazard Materials 2016, 307, 240–252) in which we followed the degradation of the 16 US EPA PAHs over 40 weeks in soil microcosms taken from a high organic matter content woodland soil. The soil was amended with a PAH mixture (total concentration of 2166 mg kg−1) and with a range of metal co-contaminant concentrations (lead, up to 782 mg kg−1; cadmium up to 620 mg kg−1; and mercury up to 1150 mg kg−1). It was found that the magnitude of m increases in relation to the applied concentration of metal co-contaminant, indicating a more adverse effect on microbial communities that participate in the removal of higher molecular weight PAHs. We conclude that m is a useful parameter by which we might measure the differential effects of environmental contaminants on the PAH removal. Such information will be useful in planning and implementing remediation strategies.
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Geng S, Qin W, Cao W, Wang Y, Ding A, Zhu Y, Fan F, Dou J. Pilot-scale bioaugmentation of polycyclic aromatic hydrocarbon (PAH)-contaminated soil using an indigenous bacterial consortium in soil-slurry bioreactors. CHEMOSPHERE 2022; 287:132183. [PMID: 34500332 DOI: 10.1016/j.chemosphere.2021.132183] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2021] [Revised: 08/08/2021] [Accepted: 09/04/2021] [Indexed: 06/13/2023]
Abstract
Soil-slurry bioreactor based bioremediation of polycyclic aromatic hydrocarbons (PAHs) contaminated soil was studied through laboratory and pilot-scale trials, in which the degradation mechanism was explored. Indigenous PAH-degrading consortium was firstly screened out and it degraded 80.5% of total PAHs in lab-scale bioreactors. Then a pilot-scale trial lasting 410 days was conducted in two bioreactors of 1.5 m3 to examine the operating parameters and validate the optimum running conditions. During the initial 200 days, the crucial running parameters affecting PAH removal were evaluated and selected. Subsequently, an average PAH removal rate of 93.4% was achieved during 15 consecutive batches (210 days) under the optimum running conditions. The kinetic analysis showed that the reactor under optimum conditions achieved the highest PAH degradation rate of 0.1795 day-1 and the shortest half-life of 3.86 days. Notably, efficient mass transfer of PAHs and high biodegradation capability by bioaugmented consortia in soil-slurry bioreactors were two key mechanisms for appreciable PAH removal performance. Under the optimal operating conditions, the degradation rate of low-molecular-weight (LMW) PAHs was significantly higher than high-molecular-weight (HMW) PAHs; when the mass transfer was limited, there was no significant difference between their degradation behaviors. Both microbial co-metabolism and collaborative metabolism might occur when all PAHs demonstrated low degradation rates. The findings provide insightful guidance on the future assessment and remediation practices of PAH-contaminated sites.
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Affiliation(s)
- Shuying Geng
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China
| | - Wei Qin
- School of Environment, Tsinghua University, Beijing, 100084, PR China
| | - Wei Cao
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China
| | - Yingying Wang
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China
| | - Aizhong Ding
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China
| | - Yi Zhu
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China
| | - Fuqiang Fan
- Advanced Institute of Natural Sciences, Beijing Normal University at Zhuhai, Zhuhai, 519087, PR China.
| | - Junfeng Dou
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China.
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Ascomycetes versus Spent Mushroom Substrate in Mycoremediation of Dredged Sediments Contaminated by Total Petroleum Hydrocarbons: The Involvement of the Bacterial Metabolism. WATER 2021. [DOI: 10.3390/w13213040] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Two mycoremediation approaches for the depletion of the total petroleum hydrocarbons in dredged sediments were compared: co-composting with spent mushroom substrate (SMS) from Pleurotus ostreatus and bioaugmentation with Lambertella sp. MUT 5852, an ascomycetes autochthonous to the sediment, capable of utilizing diesel oil its sole carbon source. After 28 days of incubation, 99% depletion was observed in presence of Lambertella sp. MUT 5852. No total petroleum hydrocarbon depletion was observed in sediment co-composting with the SMS after 60 days of incubation. 16S rDNA metabarcoding of the bacterial community was performed to evaluate the potential synergism between fungi and bacteria in the bioremediation process. The functional metagenomic prediction approach indicated that the biodiversity of the bacterial genera potentially involved in the degradation of TPH was higher in sediment bioaugmented with Lambertella sp. MUT 5852, which resulted in being mandatory for TPH depletion. Mechanisms of co-substrate inhibition of the hydrocarburoclastic bacterial species, due to the bioavailable organic matter of the SMS, are suggested to be involved in the observed kinetics of TPH depletion, failing in the case of SMS and successful in the case of Lambertella sp. MUT 5852.
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Ghosh P, Mukherji S. Elucidation of substrate interaction effects in multicomponent systems containing 3-ring homocyclic and heterocyclic polynuclear aromatic hydrocarbons. ENVIRONMENTAL SCIENCE. PROCESSES & IMPACTS 2021; 23:1394-1404. [PMID: 34382630 DOI: 10.1039/d1em00140j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Bacterial growth and degradation experiments were conducted on carbazole (CBZ), fluorene (FLU) and dibenzothiophene (DBT) individually and in various mixture combinations using an efficient polynuclear aromatic hydrocarbon (PAH) degrading bacterial strain, Pseudomonas aeruginosa RS1. In single component systems, bacterial growth on CBZ (specific growth rate, μ = 0.99 day-1) was much higher compared to that on FLU (μ = 0.38 day-1) and DBT (μ = 0.33 day-1) and bacterial growth was inhibited in the presence of FLU and DBT in binary (μ = 0.64 day-1) and ternary (μ = 0.75 day-1) mixtures. Multisubstrate additive modelling indicated growth inhibition in all the systems. The degradation of the compounds was significantly inhibited in binary mixtures. While the degradation of the compounds in binary mixtures varied from 35 ± 4% to 73 ± 3%, their degradation varied from 61 ± 5% to 91 ± 4%, when applied as sole substrates and from 77 ± 3% to 96 ± 3%, when applied in a ternary mixture. Degradation experiments were also conducted in ternary mixtures using a 23 full factorial design and the results were examined using analysis of variance (ANOVA) and Tukey's honest significant difference (HSD) tests. At a low concentration of the heterocyclics, CBZ and DBT (5 mg L-1 each), the degradation of the PAH, FLU, was significantly enhanced (from 81 ± 1% to 93 ± 0.3%) when its concentration was increased from 5 to 30 mg L-1. The full factorial design can provide valuable insights into substrate interaction effects in mixtures.
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Affiliation(s)
- Prasenjit Ghosh
- Environmental Science and Engineering Department (ESED), Indian Institute of Technology Bombay, Powai, Mumbai 400076, India.
- Department of Civil Engineering, National Institute of Technology Goa, Farmagudi, Ponda, Goa 403401, India.
| | - Suparna Mukherji
- Environmental Science and Engineering Department (ESED), Indian Institute of Technology Bombay, Powai, Mumbai 400076, India.
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7
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Sonwani RK, Giri BS, Jaiswal RP, Singh RS, Rai BN. Performance evaluation of a continuous packed bed bioreactor: Bio-kinetics and external mass transfer study. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 201:110860. [PMID: 32563162 DOI: 10.1016/j.ecoenv.2020.110860] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2020] [Revised: 06/02/2020] [Accepted: 06/03/2020] [Indexed: 06/11/2023]
Abstract
The biodegradation of naphthalene using low-density polyethylene (LDPE) immobilized Exiguobacterium sp. RKS3 (MG696729) in a packed bed bioreactor (PBBR) was studied. The performance of a continuous PBBR was evaluated at different inlet flow rates (IFRs) (20-100 mL/h) under 64 days of operation. The maximum naphthalene removal efficiency (RE) was found at low IFR, and it further decreased with increasing IFRs. In a continuous PBBR, the external mass transfer (EMT) aspect was analysed at various IFRs, and experimental data were interrelated between Colburn factor (JD) and Reynolds number (NRe) as [Formula: see text] . A new correlation [Formula: see text] was obtained to predict the EMT aspect of naphthalene biodegradation. Andrew-Haldane model was used to evaluate the bio-kinetic parameters of naphthalene degradation, and kinetic constant νmax, Js, and Ji were found as 0.386 per day, 13.6 mg/L, and 20.54 mg/L, respectively.
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Affiliation(s)
- Ravi Kumar Sonwani
- Department of Chemical Engineering & Technology, Indian Institute of Technology (BHU), Varanasi, 221005, Uttar Pradesh, India
| | - Balendu Shekhar Giri
- Department of Chemical Engineering & Technology, Indian Institute of Technology (BHU), Varanasi, 221005, Uttar Pradesh, India
| | - Ravi Prakash Jaiswal
- Department of Chemical Engineering & Technology, Indian Institute of Technology (BHU), Varanasi, 221005, Uttar Pradesh, India
| | - Ram Sharan Singh
- Department of Chemical Engineering & Technology, Indian Institute of Technology (BHU), Varanasi, 221005, Uttar Pradesh, India
| | - Birendra Nath Rai
- Department of Chemical Engineering & Technology, Indian Institute of Technology (BHU), Varanasi, 221005, Uttar Pradesh, India.
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8
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Hammershøj R, Birch H, Redman AD, Mayer P. Mixture Effects on Biodegradation Kinetics of Hydrocarbons in Surface Water: Increasing Concentrations Inhibited Degradation whereas Multiple Substrates Did Not. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2019; 53:3087-3094. [PMID: 30801186 DOI: 10.1021/acs.est.9b00638] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Most biodegradation tests are conducted using single chemicals at high concentrations, although these chemicals are present in the environment as mixtures at low concentrations. A partitioning-based platform was recently developed for biodegradation testing of composed mixtures of hydrophobic chemicals at ng/L to μg/L concentrations. We used this platform to study the concentration and mixture effect on biodegradation kinetics. Biodegradation tests were conducted in 20 mL vials using environmental water samples as inocula. Passive dosing was applied (1) to vary initial test concentrations of individual test compounds and (2) to vary the number of mixture components between 1 and 16. Automated solid-phase microextraction coupled to gas chromatography-mass spectrometry was used to measure substrate depletion relative to abiotic controls. The number of mixture components had no or only a limited effect on the biodegradation half times for three compounds when tested at environmentally relevant concentrations. In contrast, longer lag phases and half lives were observed for single compounds when tested at higher concentrations that approached aqueous solubility. The obtained results support that simultaneous testing of multiple chemicals at low concentrations can accelerate the generation of biodegradation kinetic data, which are more environmentally relevant compared with data from tests conducted with single chemicals at much higher concentrations.
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Affiliation(s)
- Rikke Hammershøj
- Technical University of Denmark , Department of Environmental Engineering , Bygningstorvet, Building 115 , 2800 Kgs. Lyngby , Denmark
| | - Heidi Birch
- Technical University of Denmark , Department of Environmental Engineering , Bygningstorvet, Building 115 , 2800 Kgs. Lyngby , Denmark
| | - Aaron D Redman
- ExxonMobil Biomedical Science, Inc. , Annandale , New Jersey 08801 , United States
| | - Philipp Mayer
- Technical University of Denmark , Department of Environmental Engineering , Bygningstorvet, Building 115 , 2800 Kgs. Lyngby , Denmark
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9
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Tian Z, Vila J, Yu M, Bodnar W, Aitken MD. Tracing the Biotransformation of Polycyclic Aromatic Hydrocarbons in Contaminated Soil Using Stable Isotope-Assisted Metabolomics. ENVIRONMENTAL SCIENCE & TECHNOLOGY LETTERS 2018; 5:103-109. [PMID: 31572742 PMCID: PMC6767928 DOI: 10.1021/acs.estlett.7b00554] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Biotransformation of organic pollutants may result in the formation of oxidation products more toxic than the parent contaminants. However, to trace and identify those products, and the metabolic pathways involved in their formation, is still challenging within complex environmental samples. We applied stable isotope-assisted metabolomics (SIAM) to PAH-contaminated soil collected from a wood treatment facility. Soil samples were separately spiked with uniformly 13C-labeled fluoranthene, pyrene, or benzo[a]anthracene at a level below that of the native contaminant, and incubated for 1 or 2 weeks under aerobic biostimulated conditions. Combining high-resolution mass spectrometry and automated SIAM workflows, chemical structures of metabolites and metabolic pathways in the soil were proposed. Ring-cleavage products, including previously unreported intermediates such as C11H10O6 and C15H12O5, were detected originating from fluoranthene and benzo[a]anthracene, respectively. Sulfate conjugates of dihydroxy compounds were found as major metabolites of pyrene and benzo[a]anthracene, suggesting the potential role of fungi in their biotransformation in soils. A series of unknown N-containing metabolites were identified from pyrene, but their structural elucidation requires further investigation. Our results suggest that SIAM can be successfully applied to understand the fate of organic pollutants in environmental samples, opening lines of evidence for novel mechanisms of microbial transformation within such complex matrices.
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Affiliation(s)
- Zhenyu Tian
- Department of Environmental Sciences and
Engineering, Gillings School of Global Public Health, University of North Carolina
at Chapel Hill, CB 7431, Chapel Hill, NC 27599-7431 USA
| | - Joaquim Vila
- Department of Environmental Sciences and
Engineering, Gillings School of Global Public Health, University of North Carolina
at Chapel Hill, CB 7431, Chapel Hill, NC 27599-7431 USA
| | - Miao Yu
- Department of Chemistry, University of Waterloo,
Waterloo, Ontario, Canada N2L 3G1
| | - Wanda Bodnar
- Department of Environmental Sciences and
Engineering, Gillings School of Global Public Health, University of North Carolina
at Chapel Hill, CB 7431, Chapel Hill, NC 27599-7431 USA
| | - Michael D. Aitken
- Department of Environmental Sciences and
Engineering, Gillings School of Global Public Health, University of North Carolina
at Chapel Hill, CB 7431, Chapel Hill, NC 27599-7431 USA
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10
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Bezza FA, Chirwa EMN. Biosurfactant-Assisted Bioremediation of Polycyclic Aromatic Hydrocarbons (PAHs) in Liquid Culture System and Substrate Interactions. Polycycl Aromat Compd 2016. [DOI: 10.1080/10406638.2015.1129973] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Fisseha Andualem Bezza
- Water Utilisation and Environmental Engineering Division, Department of Chemical Engineering, University of Pretoria, Pretoria, Republic of South Africa
| | - Evans M. Nkhalambayausi Chirwa
- Water Utilisation and Environmental Engineering Division, Department of Chemical Engineering, University of Pretoria, Pretoria, Republic of South Africa
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11
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Bezza FA, Chirwa EMN. Bioremediation of Polycyclic Aromatic Hydrocarbon Contaminated Soil by a Microbial Consortium through Supplementation of Biosurfactant Produced by Pseudomonas aeruginosa Strain. Polycycl Aromat Compd 2016. [DOI: 10.1080/10406638.2015.1066403] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Fisseha Andualem Bezza
- Water Utilisation and Environmental Engineering Division, Department of Chemical Engineering, University of Pretoria, Pretoria, Republic of South Africa
| | - Evans M. Nkhalambayausi Chirwa
- Water Utilisation and Environmental Engineering Division, Department of Chemical Engineering, University of Pretoria, Pretoria, Republic of South Africa
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12
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Oberoi AS, Philip L. Biological Degradation of Heterocyclic Aromatic Hydrocarbons with Naphthalene-Enriched Consortium: Substrate Interaction Studies and Fate of Metabolites. Appl Biochem Biotechnol 2016; 180:400-425. [DOI: 10.1007/s12010-016-2106-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2016] [Accepted: 04/25/2016] [Indexed: 10/21/2022]
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13
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Deary ME, Ekumankama CC, Cummings SP. Development of a novel kinetic model for the analysis of PAH biodegradation in the presence of lead and cadmium co-contaminants. JOURNAL OF HAZARDOUS MATERIALS 2016; 307:240-252. [PMID: 26785214 DOI: 10.1016/j.jhazmat.2015.12.015] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2015] [Revised: 11/16/2015] [Accepted: 12/09/2015] [Indexed: 06/05/2023]
Abstract
We report on the results of a 40 week study in which the biodegradation of 16 US EPA polycyclic aromatic hydrocarbons (PAHs) was followed in microcosms containing soil of high organic carbon content (11%) in the presence and absence of lead and cadmium co-contaminants. The total spiked PAH concentration was 2166mg/kg. Mercury amendment was also made to give an abiotic control. A novel kinetic model has been developed to explain the observed biphasic nature of PAH degradation. The model assumes that PAHs are distributed across soil phases of varying degrees of bioaccessibility. The results of the analysis suggest that overall percentage PAH loss is dependent on the respective rates at which the PAHs (a) are biodegraded by soil microorganisms in pore water and bioaccessible soil phases and (b) migrate from bioaccessible to non-bioaccessible soil phases. In addition, migration of PAHs to non-bioaccessible and non-Soxhlet-extractable soil phases associated with the humin pores gives rise to an apparent removal process. The presence of metal co-contaminants shows a concentration dependent inhibition of the biological degradation processes that results in a reduction in overall degradation. Lead appears to have a marginally greater inhibitory effect than cadmium.
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Affiliation(s)
- Michael E Deary
- Department of Geography,Faculty of Engineering and Environment, Northumbria University, Ellison Building, Newcastle upon Tyne NE1 8ST, United Kingdom.
| | - Chinedu C Ekumankama
- Department of Geography,Faculty of Engineering and Environment, Northumbria University, Ellison Building, Newcastle upon Tyne NE1 8ST, United Kingdom
| | - Stephen P Cummings
- Faculty of Health and Life Sciences, Northumbria University, Ellison Building, Newcastle upon Tyne NE1 8ST, United Kingdom
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14
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Hamidi EN, Hajeb P, Selamat J, Razis AFA. Polycyclic Aromatic Hydrocarbons (PAHs) and their Bioaccessibility in Meat: a Tool for Assessing Human Cancer Risk. Asian Pac J Cancer Prev 2016; 17:15-23. [DOI: 10.7314/apjcp.2016.17.1.15] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
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15
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Bezza FA, Chirwa EMN. Biosurfactant-enhanced bioremediation of aged polycyclic aromatic hydrocarbons (PAHs) in creosote contaminated soil. CHEMOSPHERE 2016; 144:635-44. [PMID: 26408261 DOI: 10.1016/j.chemosphere.2015.08.027] [Citation(s) in RCA: 95] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2014] [Revised: 07/28/2015] [Accepted: 08/05/2015] [Indexed: 05/15/2023]
Abstract
The potential for biological treatment of an environment contaminated by complex petrochemical contaminants was evaluated using creosote contaminated soil in ex situ bio-slurry reactors. The efficacy of biosurfactant application and stimulation of in situ biosurfactant production was investigated. The biosurfactant produced was purified and characterised using Fourier transform infrared (FTIR) spectroscopy. Biosurfactant enhanced degradation of PAHs was 86.5% (with addition of biosurfactant) and 57% in controls with no biosurfactant and nutrient amendments after incubation for 45 days. A slight decrease in degradation rate observed in the simultaneous biosurfactant and nutrient, NH4NO3 and KH2PO4, supplemented microcosm can be attributed to preferential microbial consumption of the biosurfactant supplemented. The overall removal of PAHs was determined to be mass transport limited since the dissolution rate caused by the biosurfactant enhanced the bioavailability of the PAHs to the microorganisms. The consortium culture was predominated by the aromatic ring-cleaving species Bacillus stratosphericus, Bacillus subtilis, Bacillus megaterium, and Pseudomonas aeruginosa.
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Affiliation(s)
- Fisseha Andualem Bezza
- Water Utilisation and Environmental Engineering Division, Department of Chemical Engineering, University of Pretoria, Pretoria 0002, South Africa
| | - Evans M Nkhalambayausi Chirwa
- Water Utilisation and Environmental Engineering Division, Department of Chemical Engineering, University of Pretoria, Pretoria 0002, South Africa.
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16
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Baboshin M, Ivashina T, Chernykh A, Golovleva L. Comparison of the substrate specificity of two ring-hydroxylating dioxygenases from Sphingomonas sp. VKM B-2434 to polycyclic aromatic hydrocarbons. Biodegradation 2014; 25:693-703. [PMID: 24874927 DOI: 10.1007/s10532-014-9692-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2013] [Accepted: 05/09/2014] [Indexed: 11/25/2022]
Abstract
The genes of two ring-hydroxylating dioxygenases (RHDs) of Sphingomonas sp. VKM B-2434 were cloned and expressed in Escherichia coli. The relative values of the RHD specificity constants were estimated for six polycyclic aromatic hydrocarbons (PAHs) based on the kinetics of PAH mixture conversion by the recombinant strains. The substrate specificity profiles of the enzymes were found to be very different. Dioxygenase ArhA was the most specific to acenaphthylene and showed a low specificity to fluoranthene. Dioxygenase PhnA was the most specific to anthracene and phenanthrene and showed a considerable specificity to fluoranthene. Knockout derivatives of Sphingomonas sp. VKM B-2434 lacking ArhA, PhnA, and both dioxygenases were constructed. PAH degradation by the single-knockout mutants was in agreement with the substrate specificity of the RHD remaining intact. Double-knockout mutant lacking both enzymes was unable to oxidize PAHs. A mutant form of dioxygenase ArhA with altered substrate specificity was described.
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Affiliation(s)
- Mikhail Baboshin
- G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS, Prospekt Nauki 5, Pushchino, Moscow Region, Russia
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Vilcáez J, Li L, Hubbard SS. A new model for the biodegradation kinetics of oil droplets: application to the Deepwater Horizon oil spill in the Gulf of Mexico. GEOCHEMICAL TRANSACTIONS 2013; 14:4. [PMID: 24138161 PMCID: PMC4015121 DOI: 10.1186/1467-4866-14-4] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2012] [Accepted: 10/09/2013] [Indexed: 05/22/2023]
Abstract
Oil biodegradation by native bacteria is one of the most important natural processes that can attenuate the environmental impacts of marine oil spills. Existing models for oil biodegradation kinetics are mostly for dissolved oil. This work developed a new mathematical model for the biodegradation of oil droplets and applied the model to estimate the time scale for oil biodegradation under conditions relevant to the Deepwater Horizon oil spill in the Gulf of Mexico. In the model, oil is composed of droplets of various sizes following the gamma function distribution. Each oil droplet shrinks during the microbe-mediated degradation at the oil-water interface. Using our developed model, we find that the degradation of oil droplets typically goes through two stages. The first stage is characterized by microbial activity unlimited by oil-water interface with higher biodegradation rates than that of the dissolved oil. The second stage is governed by the availability of the oil-water interface, which results in much slower rates than that of soluble oil. As a result, compared to that of the dissolved oil, the degradation of oil droplets typically starts faster and then quickly slows down, ultimately reaching a smaller percentage of degraded oil in longer time. The availability of the water-oil interface plays a key role in determining the rates and extent of degradation. We find that several parameters control biodegradation rates, including size distribution of oil droplets, initial microbial concentrations, initial oil concentration and composition. Under conditions relevant to the Deepwater Horizon spill, we find that the size distribution of oil droplets (mean and coefficient of variance) is the most important parameter because it determines the availability of the oil-water interface. Smaller oil droplets with larger variance leads to faster and larger extent of degradation. The developed model will be useful for evaluating transport and fate of spilled oil, different remediation strategies, and risk assessment.
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Affiliation(s)
- Javier Vilcáez
- John and Willie Leone Family Department of Energy and Mineral Engineering, The Pennsylvania State University, University Park, PA 16802, USA
- EMS Energy Institute, The Pennsylvania State University, University Park, PA 16802, USA
- Currently at the University of Tokyo, Tokyo, Japan
| | - Li Li
- John and Willie Leone Family Department of Energy and Mineral Engineering, The Pennsylvania State University, University Park, PA 16802, USA
- EMS Energy Institute, The Pennsylvania State University, University Park, PA 16802, USA
- Earth and Environmental Systems Institute (EESI), The Pennsylvania State University, University Park, PA 16802, USA
| | - Susan S Hubbard
- Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
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Baboshin MA, Golovleva LA. Aerobic bacterial degradation of polycyclic aromatic hydrocarbons (PAHs) and its kinetic aspects. Microbiology (Reading) 2012. [DOI: 10.1134/s0026261712060021] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Koutinas M, Kiparissides A, Lam MC, Silva-Rocha R, Godinho M, de Lorenzo V, Martins dos Santos VA, Pistikopoulos EN, Mantalaris A. Improving the prediction of Pseudomonas putida mt-2 growth kinetics with the use of a gene expression regulation model of the TOL plasmid. Biochem Eng J 2011. [DOI: 10.1016/j.bej.2011.03.012] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Balasubramanian P, Philip L, Bhallamudi SM. Biodegradation of Chlorinated and Non-chlorinated VOCs from Pharmaceutical Industries. Appl Biochem Biotechnol 2010; 163:497-518. [DOI: 10.1007/s12010-010-9057-2] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2010] [Accepted: 08/09/2010] [Indexed: 11/24/2022]
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Baboshin M, Golovleva L. Multisubstrate kinetics of PAH mixture biodegradation: analysis in the double-logarithmic plot. Biodegradation 2010; 22:13-23. [DOI: 10.1007/s10532-010-9370-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2010] [Accepted: 05/04/2010] [Indexed: 11/28/2022]
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Kumar M, Wu PC, Tsai JC, Lin JG. Biodegradation of soil-applied polycyclic aromatic hydrocarbons by sulfate-reducing bacterial consortium. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART A, TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING 2009; 44:12-20. [PMID: 19085590 DOI: 10.1080/10934520802515178] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
In the present study, the potential of polycyclic aromatic hydrocarbons (PAHs) biodegradation by sulfate-reducing bacterial consortium enriched from piggery wastewater was investigated. The batch experiments of soil-applied PAH biodegradation were conducted with a mixture of PAHs, i.e., naphthalene, fluorene, phenanthrene, fluoranthene and pyrene, at a concentration of 50 mu g of each PAH per g of soil. A central composite design (CCD) was applied to determine the experimental conditions of each batch assay. The pH, biomass and ethanol concentrations were selected as independent variables and the PAH removal percentage was considered as a dependent variable. The optimal conditions for PAH biodegradation were found to be a pH between 4 and 6.5, an ethanol concentration less than 35 mg/L and a biomass concentration greater than 65 mg/L. Bench scale experiments were carried out at the optimal conditions. At the end of experiment (27 d), total PAH removals by biodegradation and volatilization were around 74% and 20%, respectively. The order of PAH removal was naphthalene, phenanthrene, fluorene, fluoranthene, and pyrene. Throughout the study, PAH biodegradation was in good correlation with sulfate reduction. Results of the kinetics study indicated a competitive inhibition between PAHs investigated.
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Affiliation(s)
- Mathava Kumar
- Institute of Environmental Engineering, National Chiao Tung University, Hsinchu, Taiwan
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